CmoCh11G001830 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G001830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At5g61370, mitochondrial
LocationCmo_Chr11: 881840 .. 883566 (+)
RNA-Seq ExpressionCmoCh11G001830
SyntenyCmoCh11G001830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGTCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCACCGGTTTCAATGGAGCTTCTGTGCTAGAACTGTATAAAGTAGTTTCATGCTCGATCGGTGGGCTAGATCTTTTGCTCCCATCACTCCGCCGGTAACAATGGAGCTTCTGCGCTAGAACTGTGTAAAATAGTTTCATGCTCGATCGGTGGGCTAGATGAATTGGAAGCCAGTCGGAACAGATGTACAGTATCCTTGACATCTTCACTCGTAACCCGGGTTATGGATTCTTGCAAAAACGAAGCTCCCACTAGAAGAGTGCTTAGATTTTTCTTGTGGTCTCTCAAGAATTTGAAACATGATTGGGTAGATGAATTGCATCTATATAAGCAAGAAGGATACTGAAAGAAATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCAATCAGTTGTAATGTATTGTTGTCATGTCTTGGTAGGATCAGGAGAGTGAAGGATATAATGTAGAACCCTTGACATGATGAAACGATCTGGTTTTCGACCCGATTGGGTTGGCTATTATCTTGTGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGTAAGAATCTATCTTTGAAATAACTTTTTGAGTTTTTGCTATCAAACCAAATCATGTGAAGTTATTTTCTTCTCGATTAATATTGTTGGGCTTTCAACGGATTATCCTAATTCTAATTTTGTCGAACAAAAAAAGAAAAAACCTAAAAATTCTGAGTGGTGACAGAAGGAGCTAGGAACTTGGAATTTGTGTAATAGAAAAAACATCCCAATAATCAGGAAACAGTGGATCCAATCACGGATCAGACGGATGCATGTGCCGTTTGAGATTTACATAAAATCCATCGGACATGAATTATAATCTTTGTTTAATGACATTAAACTTCTAATCATTCACAGAAAGTCCTTCAATTCAACGCCGTCGGTGTTCATTGTTCAGACAAATCTCTCCATTGTCTCTTCTTCTTCTTCCTTTCTTAGCTGTTCCTTATCTATCACCACCATGAATTGAATTGAATTGAATTGAATTCATCGCCATTACCCATTACTGTTCTCTTCTTCTTCTACCTCTTCCCTCCATGATTGTCCCATTTTCTGTCCCACCTCTTTGATTTCTGATCTTGCTGACATAATTGAATTGCAGGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

mRNA sequence

ATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGTCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCACCGGTTTCAATGGAGCTTCTGTGCTAGAACTGTATAAAGTAGTTTCATGCTCGATCGGTGGGCTAGATCTTTTGCTCCCATCACTCCGCCGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCAATCAGTTGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Coding sequence (CDS)

ATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGTCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCACCGGTTTCAATGGAGCTTCTGTGCTAGAACTGTATAAAGTAGTTTCATGCTCGATCGGTGGGCTAGATCTTTTGCTCCCATCACTCCGCCGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCAATCAGTTGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Protein sequence

MQCTHAMCSTIFRREYASQSRLCSHHSTGFNGASVLELYKVVSCSIGGLDLLLPSLRRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSISCLGKGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG
Homology
BLAST of CmoCh11G001830 vs. ExPASy Swiss-Prot
Match: Q9FLJ6 (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.6e-38
Identity = 90/212 (42.45%), Postives = 119/212 (56.13%), Query Frame = 0

Query: 55  SLRRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNS------ISCLGK---------- 114
           SL  CLC+ N+ +NPSGLVPEALN+M+EMRSY I P S      +SCLG+          
Sbjct: 248 SLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQI 307

Query: 115 -----------GTG--------LWTTWLI----------------PDRKFYFDLIGILCG 174
                       TG        L+ T                   P+RKFY+DLIG+LCG
Sbjct: 308 LEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCG 367

Query: 175 AERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSV 216
            ER ++AL+LFEKMKRSS+GGY  VYD+LIPKLC+GG+FE GR+LWEEA+++ + L CS+
Sbjct: 368 VERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSCSI 427

BLAST of CmoCh11G001830 vs. ExPASy Swiss-Prot
Match: Q9M907 (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana OX=3702 GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.8e-05
Identity = 34/122 (27.87%), Postives = 53/122 (43.44%), Query Frame = 0

Query: 71  GLVPEALNVMMEMRS---------YMIAPNSISCLGKGTGLW-------TTWLIPDRKFY 130
           G V  AL+++ EM+S         Y +  +S   +GK    W          L PD   Y
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276

Query: 131 FDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMA 177
             +IG+LC A R   A+E+FE ++++     +  Y+ +I      G F+    L E   A
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

BLAST of CmoCh11G001830 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.8e-04
Identity = 32/87 (36.78%), Postives = 40/87 (45.98%), Query Frame = 0

Query: 112 KFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEE 171
           K Y  LI       R   A +LFEKM+R  +     +YDVLI  LC+  D EM   L+ E
Sbjct: 284 KTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLE 343

Query: 172 AMAMGL--------KLGCSVRFSSQQE 191
               G+        KL CS  FS + E
Sbjct: 344 IKRSGIPPDRGILGKLLCS--FSEESE 368

BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A6J1E1S0 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429800 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 122/222 (54.95%), Postives = 132/222 (59.46%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCLG-------------- 117
           RCL + NLKKNPSGLVPEALNVMMEMRSY IAPNSI      SCLG              
Sbjct: 271 RCLSEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLSCLGRARRVKESCRILET 330

Query: 118 -KGTG------------------------------LWTTWLIPDRKFYFDLIGILCGAER 177
            K TG                              +    LIPDRKFY+DLIGILCG E 
Sbjct: 331 MKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVES 390

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 221
             YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS    
Sbjct: 391 EKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVL 450

BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A6J1JIV3 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484976 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 4.7e-49
Identity = 120/222 (54.05%), Postives = 130/222 (58.56%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCLG-------------- 117
           RCLC+ NLKKNPSGLVPEALNVMMEMRSY IAPNSI      SCLG              
Sbjct: 271 RCLCEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLSCLGRARRVKESCRILET 330

Query: 118 -KGTG------------------------------LWTTWLIPDRKFYFDLIGILCGAER 177
            K TG                              +    LIPDRKFY+DLIGILCG ER
Sbjct: 331 MKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVER 390

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 221
             YALELFEKMKRSSLGGY PVYDVLIPKLC GGDFEMGRQLW EAMAMG+ L CS    
Sbjct: 391 EKYALELFEKMKRSSLGGYGPVYDVLIPKLCSGGDFEMGRQLWGEAMAMGITLRCSSDVL 450

BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A6J1JIV3 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484976 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-03
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query: 10 TIFRREYASQSRLCSHHSTGFNGASVLELYKVVSCSIGGLDLLLPSLRRC 60
          + F +   +Q R CS HST  NGASV +L +VVSC+IGGLD L  +L +C
Sbjct: 32 SFFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCTIGGLDELEATLNKC 81


HSP 2 Score: 203.8 bits (517), Expect = 8.0e-49
Identity = 119/223 (53.36%), Postives = 132/223 (59.19%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCLG-------------- 117
           RCLC+ NLKKNPSGLVPEALNVMMEMRSY I+PNSI      SCLG              
Sbjct: 264 RCLCEQNLKKNPSGLVPEALNVMMEMRSYKISPNSISYNILLSCLGRTRRVKESCRILET 323

Query: 118 -KGTGLWTTW------------------------------LIPDRKFYFDLIGILCGAER 177
            K +G    W                              LIPD KFY+DLIGILCG ER
Sbjct: 324 MKRSGCRADWVSYYLVARVLFLTGRFGKGRRIVDEMIDEGLIPDXKFYYDLIGILCGVER 383

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 221
            +YALE+ +KMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKL CS    
Sbjct: 384 VNYALEMLDKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLRCSREVL 443

BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A5A7US52 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002610 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45
Identity = 109/215 (50.70%), Postives = 125/215 (58.14%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCL--------------- 117
           +CLC+ N++KNPSGLVPEALNVMMEMRSY IAPNSI      SCL               
Sbjct: 264 KCLCEKNVEKNPSGLVPEALNVMMEMRSYKIAPNSISYNILLSCLCKTRRVKESCRILEM 323

Query: 118 --------------------------GKGTGLWTTW----LIPDRKFYFDLIGILCGAER 177
                                     GKG  +        L PDRKFY++LIGILCG ER
Sbjct: 324 MKRSGCRPDCVSYYLVARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYELIGILCGVER 383

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 214
            +YA+ELFEKMKRSSLGGY PVYDVLIPK+CRGGDFEMGRQLWEEAMAMG+ L CS    
Sbjct: 384 TNYAVELFEKMKRSSLGGYGPVYDVLIPKVCRGGDFEMGRQLWEEAMAMGVSLNCSSEIL 443

BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A0A0LPF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45
Identity = 109/215 (50.70%), Postives = 125/215 (58.14%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCL--------------- 117
           +CLC+ N++KNPSGLVPE+LNVMMEMRSY I+PNSI      SCL               
Sbjct: 264 KCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEM 323

Query: 118 --------------------------GKGTGLWTTW----LIPDRKFYFDLIGILCGAER 177
                                     GKG  +        L PDRKFY+DLIGILCG ER
Sbjct: 324 MKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVER 383

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 214
            +YALELFEKMKRSSLGGY PVYDVLIPKLCRGG+FEMGRQLWEEAMAMG+ L CS    
Sbjct: 384 TNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEIL 443

BLAST of CmoCh11G001830 vs. NCBI nr
Match: KAG6587555.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352.4 bits (903), Expect = 2.9e-93
Identity = 184/230 (80.00%), Postives = 187/230 (81.30%), Query Frame = 0

Query: 1   MQCTHAMCSTIFRREYASQSRLCSHHSTGFNGASVLELYKVVSCSIGGLDLLLPSLRRCL 60
           MQCTH MCSTIF REYASQSRLCSHHS G NGASVLEL K+VSCSIGGLD L  SL RC 
Sbjct: 1   MQCTHPMCSTIFHREYASQSRLCSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCT 60

Query: 61  CKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSISCLGKGTGLWTTWLIPDRKFYFDLIGI 120
                          +L   +  R      N       GTGLWTTWLIPDRKFYFDLIGI
Sbjct: 61  V--------------SLTSSLVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGI 120

Query: 121 LCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLG 180
           LCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLG
Sbjct: 121 LCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLG 180

Query: 181 CSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG 231
           CSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG
Sbjct: 181 CSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG 216

BLAST of CmoCh11G001830 vs. NCBI nr
Match: KAG7021531.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 169/178 (94.94%), Postives = 169/178 (94.94%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSIS-----CLGKGTGLWTTWLIPDRK 117
           RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNS S     C   GTGLWTTWLIPDRK
Sbjct: 18  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCCHVWGTGLWTTWLIPDRK 77

Query: 118 FYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEA 177
           FYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEA
Sbjct: 78  FYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEA 137

Query: 178 MAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG 231
           MAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG
Sbjct: 138 MAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG 195

BLAST of CmoCh11G001830 vs. NCBI nr
Match: XP_023516447.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.8 bits (530), Expect = 5.1e-50
Identity = 122/222 (54.95%), Postives = 133/222 (59.91%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCLG-------------- 117
           RCLC+ NLKKNPSGLVPEALNVMMEMRSY IAPNSI      SCLG              
Sbjct: 271 RCLCEQNLKKNPSGLVPEALNVMMEMRSYNIAPNSISYNILLSCLGRARRVKESCRILET 330

Query: 118 -KGTG------------------------------LWTTWLIPDRKFYFDLIGILCGAER 177
            K TG                              +    LIPDRKFY+DLIGILCG E 
Sbjct: 331 MKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVES 390

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 221
             YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS    
Sbjct: 391 EKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVL 450

BLAST of CmoCh11G001830 vs. NCBI nr
Match: KAG6589519.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-49
Identity = 122/222 (54.95%), Postives = 132/222 (59.46%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCLG-------------- 117
           RCL + NLKKNPSGLVPEALNVMMEMRSY IAPNSI      SCLG              
Sbjct: 271 RCLSEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLSCLGRARRVKESCRILET 330

Query: 118 -KGTG------------------------------LWTTWLIPDRKFYFDLIGILCGAER 177
            K TG                              +    LIPDRKFY+DLIGILCG E 
Sbjct: 331 MKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVES 390

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 221
             YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS    
Sbjct: 391 EKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVL 450

BLAST of CmoCh11G001830 vs. NCBI nr
Match: XP_022921576.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-49
Identity = 122/222 (54.95%), Postives = 132/222 (59.46%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSI------SCLG-------------- 117
           RCL + NLKKNPSGLVPEALNVMMEMRSY IAPNSI      SCLG              
Sbjct: 271 RCLSEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLSCLGRARRVKESCRILET 330

Query: 118 -KGTG------------------------------LWTTWLIPDRKFYFDLIGILCGAER 177
            K TG                              +    LIPDRKFY+DLIGILCG E 
Sbjct: 331 MKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVES 390

Query: 178 ASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS---- 221
             YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS    
Sbjct: 391 EKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVL 450

BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT5G61370.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-39
Identity = 90/212 (42.45%), Postives = 119/212 (56.13%), Query Frame = 0

Query: 55  SLRRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNS------ISCLGK---------- 114
           SL  CLC+ N+ +NPSGLVPEALN+M+EMRSY I P S      +SCLG+          
Sbjct: 248 SLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQI 307

Query: 115 -----------GTG--------LWTTWLI----------------PDRKFYFDLIGILCG 174
                       TG        L+ T                   P+RKFY+DLIG+LCG
Sbjct: 308 LEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCG 367

Query: 175 AERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSV 216
            ER ++AL+LFEKMKRSS+GGY  VYD+LIPKLC+GG+FE GR+LWEEA+++ + L CS+
Sbjct: 368 VERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSCSI 427

BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT3G06920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-06
Identity = 34/122 (27.87%), Postives = 53/122 (43.44%), Query Frame = 0

Query: 71  GLVPEALNVMMEMRS---------YMIAPNSISCLGKGTGLW-------TTWLIPDRKFY 130
           G V  AL+++ EM+S         Y +  +S   +GK    W          L PD   Y
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276

Query: 131 FDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMA 177
             +IG+LC A R   A+E+FE ++++     +  Y+ +I      G F+    L E   A
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 7.0e-05
Identity = 32/87 (36.78%), Postives = 40/87 (45.98%), Query Frame = 0

Query: 112 KFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEE 171
           K Y  LI       R   A +LFEKM+R  +     +YDVLI  LC+  D EM   L+ E
Sbjct: 284 KTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLE 343

Query: 172 AMAMGL--------KLGCSVRFSSQQE 191
               G+        KL CS  FS + E
Sbjct: 344 IKRSGIPPDRGILGKLLCS--FSEESE 368

BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 33/116 (28.45%), Postives = 43/116 (37.07%), Query Frame = 0

Query: 58  RCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSISCLGKGTGLWTTWLIPDRKFYFDL 117
           +CLCK         L+   ++  M        PNS++                   Y  L
Sbjct: 260 QCLCKRKKSAEAKALIDGVMSCRMR-------PNSVT-------------------YSLL 319

Query: 118 IGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAM 174
           I   C  E    A+ LFE M  +     S  Y  LI  LC+GGDFE    L  E+M
Sbjct: 320 IHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESM 349

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FLJ63.6e-3842.45Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidop... [more]
Q9M9076.8e-0527.87Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana OX... [more]
P0C8Q69.8e-0436.78Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
A0A6J1E1S01.2e-4954.95pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit... [more]
A0A6J1JIV34.7e-4954.05pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit... [more]
A0A6J1JIV36.6e-0352.00pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit... [more]
A0A5A7US524.1e-4550.70Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LPF44.1e-4550.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6587555.12.9e-9380.00Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG7021531.11.6e-8894.94Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023516447.15.1e-5054.95pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ... [more]
KAG6589519.12.5e-4954.95Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022921576.12.5e-4954.95pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ... [more]
Match NameE-valueIdentityDescription
AT5G61370.12.5e-3942.45Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G06920.14.8e-0627.87Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G08310.17.0e-0536.78Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G11630.12.7e-0428.45Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..230
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 57..94
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 105..209
NoneNo IPR availablePANTHERPTHR46128:SF33PPR CONTAINING PLANT-LIKE PROTEINcoord: 105..209
NoneNo IPR availablePANTHERPTHR46128:SF33PPR CONTAINING PLANT-LIKE PROTEINcoord: 57..94
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 148..179
e-value: 0.001
score: 17.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 117..140
e-value: 0.13
score: 12.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 52..229
e-value: 1.9E-9
score: 39.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G001830.1CmoCh11G001830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding