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CmoCh11G001830 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGTCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCACCGGTTTCAATGGAGCTTCTGTGCTAGAACTGTATAAAGTAGTTTCATGCTCGATCGGTGGGCTAGATCTTTTGCTCCCATCACTCCGCCGGTAACAATGGAGCTTCTGCGCTAGAACTGTGTAAAATAGTTTCATGCTCGATCGGTGGGCTAGATGAATTGGAAGCCAGTCGGAACAGATGTACAGTATCCTTGACATCTTCACTCGTAACCCGGGTTATGGATTCTTGCAAAAACGAAGCTCCCACTAGAAGAGTGCTTAGATTTTTCTTGTGGTCTCTCAAGAATTTGAAACATGATTGGGTAGATGAATTGCATCTATATAAGCAAGAAGGATACTGAAAGAAATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCAATCAGTTGTAATGTATTGTTGTCATGTCTTGGTAGGATCAGGAGAGTGAAGGATATAATGTAGAACCCTTGACATGATGAAACGATCTGGTTTTCGACCCGATTGGGTTGGCTATTATCTTGTGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGTAAGAATCTATCTTTGAAATAACTTTTTGAGTTTTTGCTATCAAACCAAATCATGTGAAGTTATTTTCTTCTCGATTAATATTGTTGGGCTTTCAACGGATTATCCTAATTCTAATTTTGTCGAACAAAAAAAGAAAAAACCTAAAAATTCTGAGTGGTGACAGAAGGAGCTAGGAACTTGGAATTTGTGTAATAGAAAAAACATCCCAATAATCAGGAAACAGTGGATCCAATCACGGATCAGACGGATGCATGTGCCGTTTGAGATTTACATAAAATCCATCGGACATGAATTATAATCTTTGTTTAATGACATTAAACTTCTAATCATTCACAGAAAGTCCTTCAATTCAACGCCGTCGGTGTTCATTGTTCAGACAAATCTCTCCATTGTCTCTTCTTCTTCTTCCTTTCTTAGCTGTTCCTTATCTATCACCACCATGAATTGAATTGAATTGAATTGAATTCATCGCCATTACCCATTACTGTTCTCTTCTTCTTCTACCTCTTCCCTCCATGATTGTCCCATTTTCTGTCCCACCTCTTTGATTTCTGATCTTGCTGACATAATTGAATTGCAGGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG ATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGTCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCACCGGTTTCAATGGAGCTTCTGTGCTAGAACTGTATAAAGTAGTTTCATGCTCGATCGGTGGGCTAGATCTTTTGCTCCCATCACTCCGCCGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCAATCAGTTGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG ATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGTCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCACCGGTTTCAATGGAGCTTCTGTGCTAGAACTGTATAAAGTAGTTTCATGCTCGATCGGTGGGCTAGATCTTTTGCTCCCATCACTCCGCCGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCAATCAGTTGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG MQCTHAMCSTIFRREYASQSRLCSHHSTGFNGASVLELYKVVSCSIGGLDLLLPSLRRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSISCLGKGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG Homology
BLAST of CmoCh11G001830 vs. ExPASy Swiss-Prot
Match: Q9FLJ6 (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 3.6e-38 Identity = 90/212 (42.45%), Postives = 119/212 (56.13%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy Swiss-Prot
Match: Q9M907 (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana OX=3702 GN=At3g06920 PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 6.8e-05 Identity = 34/122 (27.87%), Postives = 53/122 (43.44%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 9.8e-04 Identity = 32/87 (36.78%), Postives = 40/87 (45.98%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A6J1E1S0 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429800 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49 Identity = 122/222 (54.95%), Postives = 132/222 (59.46%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A6J1JIV3 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484976 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 4.7e-49 Identity = 120/222 (54.05%), Postives = 130/222 (58.56%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A6J1JIV3 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484976 PE=4 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 6.6e-03 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0
HSP 2 Score: 203.8 bits (517), Expect = 8.0e-49 Identity = 119/223 (53.36%), Postives = 132/223 (59.19%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A5A7US52 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002610 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45 Identity = 109/215 (50.70%), Postives = 125/215 (58.14%), Query Frame = 0
BLAST of CmoCh11G001830 vs. ExPASy TrEMBL
Match: A0A0A0LPF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45 Identity = 109/215 (50.70%), Postives = 125/215 (58.14%), Query Frame = 0
BLAST of CmoCh11G001830 vs. NCBI nr
Match: KAG6587555.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 352.4 bits (903), Expect = 2.9e-93 Identity = 184/230 (80.00%), Postives = 187/230 (81.30%), Query Frame = 0
BLAST of CmoCh11G001830 vs. NCBI nr
Match: KAG7021531.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88 Identity = 169/178 (94.94%), Postives = 169/178 (94.94%), Query Frame = 0
BLAST of CmoCh11G001830 vs. NCBI nr
Match: XP_023516447.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 208.8 bits (530), Expect = 5.1e-50 Identity = 122/222 (54.95%), Postives = 133/222 (59.91%), Query Frame = 0
BLAST of CmoCh11G001830 vs. NCBI nr
Match: KAG6589519.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 206.5 bits (524), Expect = 2.5e-49 Identity = 122/222 (54.95%), Postives = 132/222 (59.46%), Query Frame = 0
BLAST of CmoCh11G001830 vs. NCBI nr
Match: XP_022921576.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita moschata]) HSP 1 Score: 206.5 bits (524), Expect = 2.5e-49 Identity = 122/222 (54.95%), Postives = 132/222 (59.46%), Query Frame = 0
BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT5G61370.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 159.8 bits (403), Expect = 2.5e-39 Identity = 90/212 (42.45%), Postives = 119/212 (56.13%), Query Frame = 0
BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT3G06920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 49.3 bits (116), Expect = 4.8e-06 Identity = 34/122 (27.87%), Postives = 53/122 (43.44%), Query Frame = 0
BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 45.4 bits (106), Expect = 7.0e-05 Identity = 32/87 (36.78%), Postives = 40/87 (45.98%), Query Frame = 0
BLAST of CmoCh11G001830 vs. TAIR 10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04 Identity = 33/116 (28.45%), Postives = 43/116 (37.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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