CmoCh11G001640 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G001640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein EMBRYO DEFECTIVE 514-like
LocationCmo_Chr11: 816148 .. 817179 (+)
RNA-Seq ExpressionCmoCh11G001640
SyntenyCmoCh11G001640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCCGCTACTAGGGTTTTAGTTCTTAAGCCTGTCGGTTCCAACTTCAGAGTATAGTTCGAAATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGATGACCATGCCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGGTATAATATTATGGACTTCTTTTATCTGCTATCCTTCTCTGTTTTGTTCATGGAAAGGCTACGAATAGCATTGATAAAACTTTATTTTCTGCTAAATGCTGCTGATTTTGTTCATCATCGTCATTGTTTTAGTGTATAAAAGATACATGTAGCTAAACAATAAAATAAAATTACTAAATGGGGTGGGGAACTGGGATCTCTGTACTCATGAAAGGGTGAGTGGTTCATCAATTTTAGCAGAAGGGTGAATGCTCTACCAAAAATATTTGTTCGTCAATCAATTTAATATGAAGCTTTTACTATTTTTTATCTTTTGTGTCATGAATTACGGTCTTAATTATTGTAGTTGTTTTGTTGGAGAATAAGCTTGTATTCATGGACAAGTTGGAATTTGAGACTTGTTCTTCAATATTCTGATGGAGATTGATGATGGTTGCCTCATAACTTGTAAGAGTTTGAGGTCTTTACTTCTCGGAGATTCGTAATGGGTACAAGAGATCTCTAAATTTCTTGCTTGGTGAATTATCTGAATTGAAAACACTAAGGTCATTTGGATTCTTGTGTCAGATTGATTAG

mRNA sequence

TAATCCGCTACTAGGGTTTTAGTTCTTAAGCCTGTCGGTTCCAACTTCAGAGTATAGTTCGAAATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGATGACCATGCCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGATTGATTAG

Coding sequence (CDS)

ATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGATGACCATGCCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGATTGATTAG

Protein sequence

MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
Homology
BLAST of CmoCh11G001640 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-11
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 15  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKV 74
           EV      DME+E+  PK   GD                KREREE   +++ GE+KK KV
Sbjct: 14  EVNPDQKVDMEVETATPKAETGD---------------EKREREETEEEENGGESKKQKV 73

Query: 75  EKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID 134
            +                EE+ GPV LGPK F +SV +FDYF  FLH+WP +L+VN+ +
Sbjct: 74  GE----------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYE 101

BLAST of CmoCh11G001640 vs. ExPASy TrEMBL
Match: A0A6J1F569 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
           GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HYWPANLNVNQID 134
           HYWPANLNVNQ +
Sbjct: 121 HYWPANLNVNQYE 133

BLAST of CmoCh11G001640 vs. ExPASy TrEMBL
Match: A0A6J1IBL1 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita maxima OX=3661 GN=LOC111471455 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
           GA D+ GEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELF+YFYNFL
Sbjct: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120

Query: 121 HYWPANLNVNQID 134
           HYWPANLNVNQ +
Sbjct: 121 HYWPANLNVNQYE 133

BLAST of CmoCh11G001640 vs. ExPASy TrEMBL
Match: A0A6J1C0K4 (protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.0e-48
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELEST----EPKVSGGDSDANEAAPVTNGDANSKRE 60
           MAEET PQLAEN PEVTNSA EDMELE++    EPK   GDS+ANEAAP TNGDANSKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYF 120
           REEE AD++ GEAKKPKVEKSVEEER+EKVE DGKG+E+ GPVSLGPKSFGSSVE+FDYF
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YNFLHYWPANLNVNQID 134
           Y FLHYWPANLN+N+ +
Sbjct: 121 YKFLHYWPANLNLNEYE 137

BLAST of CmoCh11G001640 vs. ExPASy TrEMBL
Match: A0A0A0LRN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.2e-38
Identity = 97/133 (72.93%), Postives = 104/133 (78.20%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKRER EE
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKRER-EE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
            ADD   + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HYWPANLNVNQID 134
           H+WP NLNVNQ +
Sbjct: 121 HHWPVNLNVNQYE 129

BLAST of CmoCh11G001640 vs. ExPASy TrEMBL
Match: A0A6J1E069 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111429642 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.1e-37
Identity = 95/135 (70.37%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEP--KVSGGDSDANEAAPVTNGDANSKRERE 60
           MAEETIPQ AEN  EVTN  AEDMELE+TEP  +  G + +ANEAA VTNGDANSKRERE
Sbjct: 1   MAEETIPQPAENNQEVTN--AEDMELENTEPVAEPKGSNDEANEAAKVTNGDANSKRERE 60

Query: 61  EEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYN 120
           EE AD    E KK K+EKSVEE R+EK + DGKGEEE GPV++GPKSF SS ELFD+FY 
Sbjct: 61  EESADGSVEEVKKQKMEKSVEEGRVEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120

Query: 121 FLHYWPANLNVNQID 134
           FLH+WPA LNVNQ +
Sbjct: 121 FLHHWPAYLNVNQYE 133

BLAST of CmoCh11G001640 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
           GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HYWPANLNVNQID 134
           HYWPANLNVNQ +
Sbjct: 121 HYWPANLNVNQYE 133

BLAST of CmoCh11G001640 vs. NCBI nr
Match: KAG7021514.1 (Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDS+ANEAAPVTNGDANSKREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSEANEAAPVTNGDANSKREREEE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
           GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HYWPANLNVNQID 134
           HYWPANLNVNQ +
Sbjct: 121 HYWPANLNVNQYE 133

BLAST of CmoCh11G001640 vs. NCBI nr
Match: XP_022972943.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
           GA D+ GEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELF+YFYNFL
Sbjct: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120

Query: 121 HYWPANLNVNQID 134
           HYWPANLNVNQ +
Sbjct: 121 HYWPANLNVNQYE 133

BLAST of CmoCh11G001640 vs. NCBI nr
Match: XP_023529405.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 125/133 (93.98%), Postives = 127/133 (95.49%), Query Frame = 0

Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQL ENGPEVTNS+AEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE
Sbjct: 1   MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120
           GA D  GEAKK KVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GAGDCVGEAKKLKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HYWPANLNVNQID 134
           HYWPANLNVNQ +
Sbjct: 121 HYWPANLNVNQYE 133

BLAST of CmoCh11G001640 vs. NCBI nr
Match: KAG6587539.1 (Protein EMBRYO DEFECTIVE 514, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 24  MELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERL 83
           MELESTEPKVSGGDS+ANEAAPVTNGDANSKREREEEGADDHAGE KKPKVEKSVEEERL
Sbjct: 1   MELESTEPKVSGGDSEANEAAPVTNGDANSKREREEEGADDHAGEVKKPKVEKSVEEERL 60

Query: 84  EKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID 134
           EKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQ +
Sbjct: 61  EKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQYE 110

BLAST of CmoCh11G001640 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 15  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKV 74
           EV      DME+E+  PK   GD                KREREE   +++ GE+KK KV
Sbjct: 14  EVNPDQKVDMEVETATPKAETGD---------------EKREREETEEEENGGESKKQKV 73

Query: 75  EKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID 134
            +                EE+ GPV LGPK F +SV +FDYF  FLH+WP +L+VN+ +
Sbjct: 74  GE----------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYE 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8L5572.2e-1138.66Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1F5692.5e-6398.50protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 ... [more]
A0A6J1IBL16.9e-6195.49protein EMBRYO DEFECTIVE 514-like OS=Cucurbita maxima OX=3661 GN=LOC111471455 PE... [more]
A0A6J1C0K43.0e-4878.83protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4... [more]
A0A0A0LRN98.2e-3872.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1[more]
A0A6J1E0693.1e-3770.37protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111429642 ... [more]
Match NameE-valueIdentityDescription
XP_022933555.15.2e-6398.50protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata][more]
KAG7021514.11.5e-6297.74Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022972943.11.4e-6095.49protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima][more]
XP_023529405.11.7e-5893.98protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo][more]
KAG6587539.11.5e-4996.36Protein EMBRYO DEFECTIVE 514, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT5G62440.11.5e-1238.66Protein of unknown function (DUF3223) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..98
NoneNo IPR availablePANTHERPTHR33415:SF12PROTEIN EMBRYO DEFECTIVE 514coord: 17..131
IPR044673Protein DCL-likePANTHERPTHR33415FAMILY NOT NAMEDcoord: 17..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G001640.1CmoCh11G001640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017126 nucleologenesis
cellular_component GO:0005634 nucleus