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CmoCh11G001600 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTCAGCGTCTTACTTACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTCAAAACCCCTGGTAGCGCTCTCATTCGACTCCATTCTATATCTATCCCATTGTTTCTTGTGCATTTGATATTGCATTCAATGCTTGTTGGAAATCCATTGTTGGCTGATATTTGTGTCATTGTTCTTCTTTTCTGTTTATAGGGGGGAAGCTTGTGTACCAGACTACCAAGAAAAGAGCCAGTGGTCCGAAATGTCCGGTTACTGGCAAAAGGATTCAGGGAGTAAGTTTTTAATCACAGTTCTCTGCCTTTCTTTTTTACTCTTGTTAGTTATTTCACCAGTTACGTGTCTGATTGATGTACTCGTTCCATTTCTCTGTTCACTTTCCTGATATTTTGATTAGCTGATGGATGTTATCTTTTTGTGGCGCGTGCTTTTGCCTTTAGTGGATTGATTGATGTTACTTGCTAAATGTAGCACTTGTAGTTTAGGGCATTGTGGTAGTTGTTCTCTTTTTGTTTCTTTTGTTTGCTGTGTCCAACTTATTTGATAGACAAGGAAAAAGGGAAAAAAACTGATGCAGATAGCTTCCGTTAGGTTTGCGCCGCATTTGTGATGCATTAGAGAAAGTTTTTGTCGATCAGTACTGAAATTTCGCTCGTGTATGGAACTTTTGGTTCCTACGATCATTACTCCGGAAGTTGCTAGGTTTTTCAGGGAGACTAGTTTTTTTCCAAGTTCAAATTAATTCTAATTCCCTTGGCAATAACTGAACTTCGTCCGAGTGATTTCTTATTTCGTTTTTGCGAGTGGAAGTTAAATGAATCTCTATATTTTTTATGGCCTGATTGTTCCTCTGGATTATTCGCTGTTCCGCTGGCCTCACCATGTTGTCATTGAGCATGATCAAAGACAGCCGTCACAGACTGAAATCAATCTCATAATGAAAATATTCATTTTCATAGTTTTATTTTGGACGTCTGAATGATCCACAAATTGGATGGAGGAGCATATATTTTTAGTACGACTATATGTTTATATTGCCTCTCTTTTTGTTCGGAGGACTCTTTTCTGCCCTGAACTTAAGGCCGAAAGTTCTTCTCTTCATTATTTAAAATGCATATACAATACATAGAGGATTTCAGGACTTCCAGTTTAACCATATCTTAGATTGTCGAACTGGATCCTTATGGCATACCTGCAAAATATTCATTCATTTTACATATTAACGTCAAGATAGTAGTGTTCAACTATGTTCTATTTACAAAAAAAAAATATGTGATTGGTCCTGGAATATGTTTTATTTATGGCATTCTATGCATGTTTCTACACACGAAGGTATCTATCTATTGGACATCCATTCTTGTACATTGGTAGATGCATTCATGTACATTTGTTCTTCATTGCATGCATTCTCTTTCTCTTGGTAGACCCATGTATATACACTTGTGCTTCATGACTTACATTCTTTGTATACTGGTAGACCCATGTATATACATTTACGCACTCACATGTATGGTTTTGGACACCTTAATTGTATGTTAGCTCAGCCTTCTAAGTTTAAGTTGGTTATTGAAAATTGGCTATTTGGTTTTTGCTCATTTGCATCAAGCTGGTGACAAATTCCGAAATTATATGGCTGTAAAGTGGCCTCAGACCAGAAGATAGCTTTGGTTAATCCGTGTAAAATTTGTGTTCGCTGCAGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTGGCTAGAAACCGGAGGACTGTTAATCGTGCATACGGCGGTGTTTTATCTGGCGGTGCCGTTAGAGAGAGGTTGGCTTCCCATTACATTTTTTGACGTCTCAATATTTCATCTATTTGATTGTATTTATCATAAATTATTTGCTTGCATCTTTCTTTTCCGGTGGGGTAGGATCATTCGGGCCTTTTTGGTGGAAGAGCAAAAAATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAGAAGCTTGCATCAAAGAGCTAAATTATGAATAGGTGGTGGTGTTTTTTAAGATAATTGAAGAAATTTTGACTTTTTTTTTTTTTTTTTGAGTTGATGCTGAATTTTAGAGATTATTATTTAAAATTTGGTTTGGGTGGAATGAGATTTTAGTTCCGGAATTCACCTTTAATTGTTATAAATGTCGTACACTTCTATGATATTTTTTTCCTTTTTATTAGATTTTTTATTTGATGGCCTTTGTTGAACCATTTTCTCCACAAGCTTCTTACCAATTAACATTAATTGATTATAAAAACTTACTTGGTCTTATTTAAGTCTAGGGATGTAACATCTCATCCACCATCACATTTGACTGATTCAATTATCATTTTATTTATTTATTTATTTTTCTAAATTAAAAAAGAAATTAGAAAAATAACTAAGAATTTATGAACTGGGACGCGTTCTTGTTCATGTATAATCCTATTTGTAGTGAAGTATTTAAGATTCTATGTAGATTTATTACTATTATAATTGTTCATGTATAATCCTATTTGTAGTGAAGTATTTAAGATTCTATGTAGATTTATTACTATTATAAACCAACGAACACTATTAGCATTACAAAATCAACCTCTTCACTATTTATTGCACCTCCAAATCTTCGATCATTTGGGCAATGAATTTAAGCTCAAATATGAACTAATAGTTTCTCCTTTATATTTGTAGGATGGTCCATGTCGGTGCAGGAAGTGTAGAAGAAGAGAAGGAAACGTGGTTGATTGGGTTTTGTATTGTTCATAGTGTGTGTAGGAGTTGACAGTTTCAAAAAGTTTATAGAACAAAGAATTCCACATGAATATGGTGATGGGGATTTGAAGGTGGGCAGCCATGGAAGGTTGGTATGCTATAACATTGCTTGCACATCCTTGTCTTTATTTAATATTTGACCCTATCCCAAACAACAATGCCTTACCCCACTACCAATTAATGTCACAAATTCATCCATCATGCATTCACATCAATCGCCTCATTGCCCCTTTAAACATCTTTCAACTTTTTTGGCTAACC ATGGTTCAGCGTCTTACTTACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTCAAAACCCCTGGTAGCGCTCTCATTCGACTCCATTCTATATCTATCCCATTGTTTCTTGTGCATTTGATATTGCATTCAATGCTTGTTGGAAATCCATTGTTGGCTGATATTTGTGTCATTGTTCTTCTTTTCTGGGGGAAGCTTGTGTACCAGACTACCAAGAAAAGAGCCAGTGGTCCGAAATGTCCGGTTACTGGCAAAAGGATTCAGGGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTGGCTAGAAACCGGAGGACTGTTAATCGTGCATACGGCGGTGTTTTATCTGGCGGTGCCGTTAGAGAGAGGATCATTCGGGCCTTTTTGGTGGAAGAGCAAAAAATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAGAAGCTTGCATCAAAGAGCTAAATTATGAATAGGATGGTCCATGTCGGTGCAGGAAGTGTAGAAGAAGAGAAGGAAACGTGGTTGATTGGGTTTTGTATTGTTCATAGTGTGTGTAGGAGTTGACAGTTTCAAAAAGTTTATAGAACAAAGAATTCCACATGAATATGGTGATGGGGATTTGAAGGTGGGCAGCCATGGAAGGTTGGTATGCTATAACATTGCTTGCACATCCTTGTCTTTATTTAATATTTGACCCTATCCCAAACAACAATGCCTTACCCCACTACCAATTAATGTCACAAATTCATCCATCATGCATTCACATCAATCGCCTCATTGCCCCTTTAAACATCTTTCAACTTTTTTGGCTAACC ATGGTTCAGCGTCTTACTTACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTCAAAACCCCTGGTAGCGCTCTCATTCGACTCCATTCTATATCTATCCCATTGTTTCTTGTGCATTTGATATTGCATTCAATGCTTGTTGGAAATCCATTGTTGGCTGATATTTGTGTCATTGTTCTTCTTTTCTGGGGGAAGCTTGTGTACCAGACTACCAAGAAAAGAGCCAGTGGTCCGAAATGTCCGGTTACTGGCAAAAGGATTCAGGGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTGGCTAGAAACCGGAGGACTGTTAATCGTGCATACGGCGGTGTTTTATCTGGCGGTGCCGTTAGAGAGAGGATCATTCGGGCCTTTTTGGTGGAAGAGCAAAAAATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAGAAGCTTGCATCAAAGAGCTAA MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADICVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS Homology
BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 3.4e-51 Identity = 114/161 (70.81%), Postives = 118/161 (73.29%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 1.3e-50 Identity = 113/161 (70.19%), Postives = 117/161 (72.67%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 1.8e-49 Identity = 110/161 (68.32%), Postives = 116/161 (72.05%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 9.2e-49 Identity = 109/160 (68.12%), Postives = 113/160 (70.62%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 3.5e-48 Identity = 109/161 (67.70%), Postives = 112/161 (69.57%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51 Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51 Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51 Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1JDI0 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50 Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A059D9F6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50 Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. NCBI nr
Match: KAF7142685.1 (hypothetical protein RHSIM_Rhsim05G0185000 [Rhododendron simsii]) HSP 1 Score: 211.1 bits (536), Expect = 7.2e-51 Identity = 118/161 (73.29%), Postives = 126/161 (78.26%), Query Frame = 0
BLAST of CmoCh11G001600 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 210.7 bits (535), Expect = 9.4e-51 Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 210.7 bits (535), Expect = 9.4e-51 Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. NCBI nr
Match: XP_010044743.1 (60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449442.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449623.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030550747.1 60S ribosomal protein L34 [Rhodamnia argentea] >XP_030550759.1 60S ribosomal protein L34 [Rhodamnia argentea] >KAF7851679.1 hypothetical protein BT93_L3193 [Corymbia citriodora subsp. variegata] >KAF7851688.1 hypothetical protein BT93_L3202 [Corymbia citriodora subsp. variegata] >KAF8021475.1 hypothetical protein BT93_G1807 [Corymbia citriodora subsp. variegata] >KCW86845.1 hypothetical protein EUGRSUZ_B03442 [Eucalyptus grandis]) HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50 Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida]) HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50 Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein ) HSP 1 Score: 196.8 bits (499), Expect = 1.3e-50 Identity = 110/161 (68.32%), Postives = 116/161 (72.05%), Query Frame = 0
BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 ) HSP 1 Score: 194.5 bits (493), Expect = 6.5e-50 Identity = 109/160 (68.12%), Postives = 113/160 (70.62%), Query Frame = 0
BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein ) HSP 1 Score: 192.6 bits (488), Expect = 2.5e-49 Identity = 109/161 (67.70%), Postives = 112/161 (69.57%), Query Frame = 0
BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein ) HSP 1 Score: 155.6 bits (392), Expect = 3.4e-38 Identity = 84/133 (63.16%), Postives = 88/133 (66.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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