CmoCh11G001600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G001600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L34
Location	Cmo_Chr11: 803747 .. 806793 (+)
RNA-Seq Expression	CmoCh11G001600
Synteny	CmoCh11G001600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGCGTCTTACTTACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTCAAAACCCCTGGTAGCGCTCTCATTCGACTCCATTCTATATCTATCCCATTGTTTCTTGTGCATTTGATATTGCATTCAATGCTTGTTGGAAATCCATTGTTGGCTGATATTTGTGTCATTGTTCTTCTTTTCTGTTTATAGGGGGGAAGCTTGTGTACCAGACTACCAAGAAAAGAGCCAGTGGTCCGAAATGTCCGGTTACTGGCAAAAGGATTCAGGGAGTAAGTTTTTAATCACAGTTCTCTGCCTTTCTTTTTTACTCTTGTTAGTTATTTCACCAGTTACGTGTCTGATTGATGTACTCGTTCCATTTCTCTGTTCACTTTCCTGATATTTTGATTAGCTGATGGATGTTATCTTTTTGTGGCGCGTGCTTTTGCCTTTAGTGGATTGATTGATGTTACTTGCTAAATGTAGCACTTGTAGTTTAGGGCATTGTGGTAGTTGTTCTCTTTTTGTTTCTTTTGTTTGCTGTGTCCAACTTATTTGATAGACAAGGAAAAAGGGAAAAAAACTGATGCAGATAGCTTCCGTTAGGTTTGCGCCGCATTTGTGATGCATTAGAGAAAGTTTTTGTCGATCAGTACTGAAATTTCGCTCGTGTATGGAACTTTTGGTTCCTACGATCATTACTCCGGAAGTTGCTAGGTTTTTCAGGGAGACTAGTTTTTTTCCAAGTTCAAATTAATTCTAATTCCCTTGGCAATAACTGAACTTCGTCCGAGTGATTTCTTATTTCGTTTTTGCGAGTGGAAGTTAAATGAATCTCTATATTTTTTATGGCCTGATTGTTCCTCTGGATTATTCGCTGTTCCGCTGGCCTCACCATGTTGTCATTGAGCATGATCAAAGACAGCCGTCACAGACTGAAATCAATCTCATAATGAAAATATTCATTTTCATAGTTTTATTTTGGACGTCTGAATGATCCACAAATTGGATGGAGGAGCATATATTTTTAGTACGACTATATGTTTATATTGCCTCTCTTTTTGTTCGGAGGACTCTTTTCTGCCCTGAACTTAAGGCCGAAAGTTCTTCTCTTCATTATTTAAAATGCATATACAATACATAGAGGATTTCAGGACTTCCAGTTTAACCATATCTTAGATTGTCGAACTGGATCCTTATGGCATACCTGCAAAATATTCATTCATTTTACATATTAACGTCAAGATAGTAGTGTTCAACTATGTTCTATTTACAAAAAAAAAATATGTGATTGGTCCTGGAATATGTTTTATTTATGGCATTCTATGCATGTTTCTACACACGAAGGTATCTATCTATTGGACATCCATTCTTGTACATTGGTAGATGCATTCATGTACATTTGTTCTTCATTGCATGCATTCTCTTTCTCTTGGTAGACCCATGTATATACACTTGTGCTTCATGACTTACATTCTTTGTATACTGGTAGACCCATGTATATACATTTACGCACTCACATGTATGGTTTTGGACACCTTAATTGTATGTTAGCTCAGCCTTCTAAGTTTAAGTTGGTTATTGAAAATTGGCTATTTGGTTTTTGCTCATTTGCATCAAGCTGGTGACAAATTCCGAAATTATATGGCTGTAAAGTGGCCTCAGACCAGAAGATAGCTTTGGTTAATCCGTGTAAAATTTGTGTTCGCTGCAGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTGGCTAGAAACCGGAGGACTGTTAATCGTGCATACGGCGGTGTTTTATCTGGCGGTGCCGTTAGAGAGAGGTTGGCTTCCCATTACATTTTTTGACGTCTCAATATTTCATCTATTTGATTGTATTTATCATAAATTATTTGCTTGCATCTTTCTTTTCCGGTGGGGTAGGATCATTCGGGCCTTTTTGGTGGAAGAGCAAAAAATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAGAAGCTTGCATCAAAGAGCTAAATTATGAATAGGTGGTGGTGTTTTTTAAGATAATTGAAGAAATTTTGACTTTTTTTTTTTTTTTTTGAGTTGATGCTGAATTTTAGAGATTATTATTTAAAATTTGGTTTGGGTGGAATGAGATTTTAGTTCCGGAATTCACCTTTAATTGTTATAAATGTCGTACACTTCTATGATATTTTTTTCCTTTTTATTAGATTTTTTATTTGATGGCCTTTGTTGAACCATTTTCTCCACAAGCTTCTTACCAATTAACATTAATTGATTATAAAAACTTACTTGGTCTTATTTAAGTCTAGGGATGTAACATCTCATCCACCATCACATTTGACTGATTCAATTATCATTTTATTTATTTATTTATTTTTCTAAATTAAAAAAGAAATTAGAAAAATAACTAAGAATTTATGAACTGGGACGCGTTCTTGTTCATGTATAATCCTATTTGTAGTGAAGTATTTAAGATTCTATGTAGATTTATTACTATTATAATTGTTCATGTATAATCCTATTTGTAGTGAAGTATTTAAGATTCTATGTAGATTTATTACTATTATAAACCAACGAACACTATTAGCATTACAAAATCAACCTCTTCACTATTTATTGCACCTCCAAATCTTCGATCATTTGGGCAATGAATTTAAGCTCAAATATGAACTAATAGTTTCTCCTTTATATTTGTAGGATGGTCCATGTCGGTGCAGGAAGTGTAGAAGAAGAGAAGGAAACGTGGTTGATTGGGTTTTGTATTGTTCATAGTGTGTGTAGGAGTTGACAGTTTCAAAAAGTTTATAGAACAAAGAATTCCACATGAATATGGTGATGGGGATTTGAAGGTGGGCAGCCATGGAAGGTTGGTATGCTATAACATTGCTTGCACATCCTTGTCTTTATTTAATATTTGACCCTATCCCAAACAACAATGCCTTACCCCACTACCAATTAATGTCACAAATTCATCCATCATGCATTCACATCAATCGCCTCATTGCCCCTTTAAACATCTTTCAACTTTTTTGGCTAACC

mRNA sequence

ATGGTTCAGCGTCTTACTTACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTCAAAACCCCTGGTAGCGCTCTCATTCGACTCCATTCTATATCTATCCCATTGTTTCTTGTGCATTTGATATTGCATTCAATGCTTGTTGGAAATCCATTGTTGGCTGATATTTGTGTCATTGTTCTTCTTTTCTGGGGGAAGCTTGTGTACCAGACTACCAAGAAAAGAGCCAGTGGTCCGAAATGTCCGGTTACTGGCAAAAGGATTCAGGGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTGGCTAGAAACCGGAGGACTGTTAATCGTGCATACGGCGGTGTTTTATCTGGCGGTGCCGTTAGAGAGAGGATCATTCGGGCCTTTTTGGTGGAAGAGCAAAAAATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAGAAGCTTGCATCAAAGAGCTAAATTATGAATAGGATGGTCCATGTCGGTGCAGGAAGTGTAGAAGAAGAGAAGGAAACGTGGTTGATTGGGTTTTGTATTGTTCATAGTGTGTGTAGGAGTTGACAGTTTCAAAAAGTTTATAGAACAAAGAATTCCACATGAATATGGTGATGGGGATTTGAAGGTGGGCAGCCATGGAAGGTTGGTATGCTATAACATTGCTTGCACATCCTTGTCTTTATTTAATATTTGACCCTATCCCAAACAACAATGCCTTACCCCACTACCAATTAATGTCACAAATTCATCCATCATGCATTCACATCAATCGCCTCATTGCCCCTTTAAACATCTTTCAACTTTTTTGGCTAACC

Coding sequence (CDS)

ATGGTTCAGCGTCTTACTTACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTCAAAACCCCTGGTAGCGCTCTCATTCGACTCCATTCTATATCTATCCCATTGTTTCTTGTGCATTTGATATTGCATTCAATGCTTGTTGGAAATCCATTGTTGGCTGATATTTGTGTCATTGTTCTTCTTTTCTGGGGGAAGCTTGTGTACCAGACTACCAAGAAAAGAGCCAGTGGTCCGAAATGTCCGGTTACTGGCAAAAGGATTCAGGGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTGGCTAGAAACCGGAGGACTGTTAATCGTGCATACGGCGGTGTTTTATCTGGCGGTGCCGTTAGAGAGAGGATCATTCGGGCCTTTTTGGTGGAAGAGCAAAAAATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAGAAGCTTGCATCAAAGAGCTAA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADICVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS

Homology

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BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.4e-51
Identity = 114/161 (70.81%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 121 GVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-50
Identity = 113/161 (70.19%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYR+RHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-49
Identity = 110/161 (68.32%), Postives = 116/161 (72.05%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 121 GVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.2e-49
Identity = 109/160 (68.12%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKL YQTTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYG 119

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 161
           GVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 121 GVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-48
Identity = 109/161 (67.70%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKL YQTT KRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARN RTVNRAYG
Sbjct: 61  --------GKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 121 GVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51
Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51
Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51
Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A6J1JDI0 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50
Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. ExPASy TrEMBL
Match: A0A059D9F6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50
Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. NCBI nr
Match: KAF7142685.1 (hypothetical protein RHSIM_Rhsim05G0185000 [Rhododendron simsii])

HSP 1 Score: 211.1 bits (536), Expect = 7.2e-51
Identity = 118/161 (73.29%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHR+VKTPG+                        G  L++ +
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGNKGF---------------------GFVLISRV 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
            V   +  GKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL+RNRRTVNRAYG
Sbjct: 61  LVFFGIVGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK A KS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAGKS 140

[Close]

BLAST of CmoCh11G001600 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 9.4e-51
Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.7 bits (535), Expect = 9.4e-51
Identity = 120/161 (74.53%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 745 MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 804

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 805 --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 864

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 865 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 864

[Close]

BLAST of CmoCh11G001600 vs. NCBI nr
Match: XP_010044743.1 (60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449442.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449623.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030550747.1 60S ribosomal protein L34 [Rhodamnia argentea] >XP_030550759.1 60S ribosomal protein L34 [Rhodamnia argentea] >KAF7851679.1 hypothetical protein BT93_L3193 [Corymbia citriodora subsp. variegata] >KAF7851688.1 hypothetical protein BT93_L3202 [Corymbia citriodora subsp. variegata] >KAF8021475.1 hypothetical protein BT93_G1807 [Corymbia citriodora subsp. variegata] >KCW86845.1 hypothetical protein EUGRSUZ_B03442 [Eucalyptus grandis])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CmoCh11G001600 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRLTYRKRHSYATKSNQHRVVKTPG                                 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-50
Identity = 110/161 (68.32%), Postives = 116/161 (72.05%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 121 GVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 194.5 bits (493), Expect = 6.5e-50
Identity = 109/160 (68.12%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKL YQTTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYG 119

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 161
           GVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 121 GVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-49
Identity = 109/161 (67.70%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKL YQTT KRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARN RTVNRAYG
Sbjct: 61  --------GKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYG 120

Query: 121 GVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 162
           GVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 121 GVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of CmoCh11G001600 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-38
Identity = 84/133 (63.16%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGSALIRLHSISIPLFLVHLILHSMLVGNPLLADI 60
           MVQRL YR RHSYATKSNQHR+VKTPG                                 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPG--------------------------------- 60

Query: 61  CVIVLLFWGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYG 120
                   GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL+RNRRTVNRAYG
Sbjct: 61  --------GKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYG 92

Query: 121 GVLSGGAVRERII 134
           GVLSG AVRER +
Sbjct: 121 GVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of CmoCh11G001600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	3.4e-51	70.81	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	1.3e-50	70.19	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	1.8e-49	68.32	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	9.2e-49	68.13	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	3.5e-48	67.70	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of CmoCh11G001600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6I6	4.6e-51	74.53	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ...	[more]
A0A6J1HLN7	4.6e-51	74.53	60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=...	[more]
A0A6J1DF78	4.6e-51	74.53	60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV...	[more]
A0A6J1JDI0	1.0e-50	73.91	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 ...	[more]
A0A059D9F6	1.0e-50	73.91	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV...	[more]

BLAST of CmoCh11G001600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7142685.1	7.2e-51	73.29	hypothetical protein RHSIM_Rhsim05G0185000 [Rhododendron simsii]	[more]
XP_004138175.3	9.4e-51	74.53	60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei...	[more]
KAG6583599.1	9.4e-51	74.53	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_010044743.1	2.1e-50	73.91	60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal pro...	[more]
XP_038893923.1	2.1e-50	73.91	60S ribosomal protein L34-like [Benincasa hispida]	[more]

BLAST of CmoCh11G001600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	1.3e-50	68.32	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	6.5e-50	68.13	ribosomal protein L34	[more]
AT3G28900.1	2.5e-49	67.70	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	3.4e-38	63.16	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 147..161
None	No IPR available	GENE3D	6.20.370.70		coord: 1..35 e-value: 4.2E-17 score: 63.5
None	No IPR available	GENE3D	6.20.340.10		coord: 80..161 e-value: 4.9E-36 score: 124.5
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 68..161 coord: 1..31
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..31 e-value: 1.3E-9 score: 38.1 coord: 69..137 e-value: 3.1E-22 score: 78.6
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..31
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 68..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G001600.1	CmoCh11G001600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome