CmoCh10G012690 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G012690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionChloroplast envelope membrane protein
LocationCmo_Chr10: 13078299 .. 13081207 (-)
RNA-Seq ExpressionCmoCh10G012690
SyntenyCmoCh10G012690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTTTTGCCAAGGTGGATCTCTCTTTTATTTAATAAAAGCCTAGAATCTTGGGTTACTAATTGGTGGAATACTGGTCCATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTAGAGAATTAGAGGAACTCTTTCTCTTGGACGAAATGTTAAAGGAATACCCAGAAACACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTTTTCATACGATTTTGCACTTCTCGACACATCTACTAGATATTTGCCTTATAATAAAATATCAAATATGATATATATGTAAACTATAATTTATTATTAAATATCCTTAACAATGCACGTAAAGCTTGTTTAAGGTTATATAAATGTCTTCTTCAATTTTATACTCTTCACATTTTTTTTCACAACTTTGTGGTTGAACAAACACGGCTTAATTCTCCATACAAGAAAGCACTTTTCACATCAAGCTGATACACGCTCCAACTATTTTGAGTTGCTAAAGCAATTATGATTCAAATAGTATCCCACGTTGCAAAAAATGGAAGCACATCAGTATAGTCTATAATATGTTATTGTGCATACTCTTTTGCCACTAACCTAGCCTTATACTTGTCAACTTCGCCATTTTCGTTGAATTTAGTTTTGAAAACTCACTTGACTCCAATCTTCTTGATTTCCTTGGGCACATTTCCCAACTCTTCATTTTTTACTTTGAATAGTTTCTTCAAAGGTAGTCAGATCTGCACTTGAGGTTAATAGAACTAAATTGGTATGTTGAGCTTCTTCAGAAAATTCTCCTTGCTTACATAATCTTCCATCCATAACGGTGCTTCTCTGTTTCTCCCTTTTAGTGTACTTTATTCAGATGTTGAAGAATTTGCTTTAGATGATTCACTTGAAGATATACTTCTCCTTCTTCTACTACCACCTCCTCTTCAGGTTCTTCCTCACTTTGGTCATGTTTGCTTACTTCTGTATTACTATCTTTCCATTCGAGGGTATCAAGTCTAGCTTCTTCATTTAGCTTTTGATTTTTATATAATCAGATGCTACCTTAGGATAAGATTAAGATAACCCTTTATTTTTAAGTAATCATGTGGCTACCCTAAGATAAAACAAGCTCCTAGTAAGCATTTAGTTTTTAAGTAACCAGAAAGCTACCTTTAGATAAGCTTTAAAACAACTCTGGACAAGGATGCTACCTTCAAAACAACTCTGGACAAGGATGCTACCTTCAATCCAAATAAGCTTTAGGTAGCTTTGATTTTTAAGTAATCATATGCTACTCTAAGGATAAGGATCAAGAAGTAAGTTTTAGATAGCCTTTGATTTTGAAGTAACCAATATGATACTCTAAGGCTAAGGATCAAGTAAGTAATAGATAGCCTTTGATTTTCATGTAATCAATATGCTATCTCAAGGACATAAATCAAGTCAAGCATGTTTCACACAATCGGCCCTAAAGTAGCACTATATAAACTAAGGCCATAAAATATGAAGGTTGCTAAGCACCACGCAAGAAACAAGAACCAAAAATAAGAACAAGATTAGGAAAATGAATAAGTGTTCCTAACACATCTTAAGGTCACGATTAAGAACTTATGAGTAAGCTACTTATTGAGTTTTAGTACTCCCTCCATGTTTTTTTGGGTGACAAGAAGAAGCTGATCTAGGATAGATGCAGATTTGAAGCAAATGTCGTACAGGGCCGCACCATGTTTCAACTATTTAATGTTTTAAGTTGTTTTGTCTCCCTAAATGTATTCTACTTTAGTTTAAAAATCATTCACATTTTGTTTTTCAAGTATAATTATCTATTGATGAGTTTTTGTGAAAAGAGGAAGATTCCAAGAAATAATAATGATACGAAAGAAGTGGAGATGAAATAGGAAGCGAGGGGGAAACGGGGGTTGGTTGGTAAATGACATAAATGACCTTGGATGGGAAAAATATTACATCAATACTAATAAACGTTGATTTGACAACTCAATGATATAACGAAAATCACAATAAATTAATGGTACATTTAAAACCTAAGAAGAAGACAAAGGTGTGATAATTAAAAGTCTTTTCATAAATAATAATTTCAAAACTCAACAATATATTTAAAGATATGACCACACATTATGCCTTGAAAGTTCTCTCTTTATGTTGTATCATAAATAATAATCACATTATATTTGCAAACTTCCTCTTAAATCATCCATTATTCAAAACTTTAATTTAATCAAATATTATTTAGAAAGGAAATGACATTACACAAGTTGAAAGTCTCCCCTTCTACATATCATTTTAAATCACTATCAATTTGAAGTTTTGGGTGATAGAAAACAGTAATTGGAAAAGATGCGTCCATGTTGTTGTTGTAGCATGTCTGGGGTCAGAGGAGGCCACATAATTGTGCAAAAACAAAATGAAGTCTTCTCCACAAAACTCTCAACCATTTTCAGTGATTTTATGTGTTTAGAAAGAAGTTTGTTTTTGATCTAAGGTCTTCCATTGTTTGAACTCTTTGAATGCTTGAGAATCATCCCTTTGATGCTTTTCCAGCAACTCATTTGGTTTGGAATGTTGGTCTGAGGTAACCAAAGCATCCGGAAAGGTAACCAAACCTCTGGTTGGGCACTTGATTTTGGAGTTTCTTTACCTTTCACCTGTCGAAGAACAATGTCACTTACATTTAGAATGAGTGTTCCATAGTCTGTTAGATCCATTAATTCCTTTTCTTCTTCAGTCACAGAGGCTTGAATCTTGGAGGGATCTTGAATTGCGCCAGAATGGCCTTAATTTTGGCTACACATACCTAGAACTCACCCTTTCCATGTCGTCATACGTCGCAACAACCATTCTTCAATTTTCAACAAAATGA

mRNA sequence

ATGGTATTTTTGCCAAGGTGGATCTCTCTTTTATTTAATAAAAGCCTAGAATCTTGGGTTACTAATTGGTGGAATACTGGTCCATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTAGAGAATTAGAGGAACTCTTTCTCTTGGACGAAATCAACTCATTTGGTTTGGAATGTTGGTCTGAGGTAACCAAAGCATCCGGAAAGTCACAGAGGCTTGAATCTTGGAGGGATCTTGAATTGCGCCAGAATGGCCTTAATTTTGGCTACACATACCTAGAACTCACCCTTTCCATGTCGTCATACGTCGCAACAACCATTCTTCAATTTTCAACAAAATGA

Coding sequence (CDS)

ATGGTATTTTTGCCAAGGTGGATCTCTCTTTTATTTAATAAAAGCCTAGAATCTTGGGTTACTAATTGGTGGAATACTGGTCCATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTAGAGAATTAGAGGAACTCTTTCTCTTGGACGAAATCAACTCATTTGGTTTGGAATGTTGGTCTGAGGTAACCAAAGCATCCGGAAAGTCACAGAGGCTTGAATCTTGGAGGGATCTTGAATTGCGCCAGAATGGCCTTAATTTTGGCTACACATACCTAGAACTCACCCTTTCCATGTCGTCATACGTCGCAACAACCATTCTTCAATTTTCAACAAAATGA

Protein sequence

MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEINSFGLECWSEVTKASGKSQRLESWRDLELRQNGLNFGYTYLELTLSMSSYVATTILQFSTK
Homology
[Close]
BLAST of CmoCh10G012690 vs. ExPASy Swiss-Prot
Match: Q2QD77 (Chloroplast envelope membrane protein OS=Cucumis sativus OX=3659 GN=cemA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL FNKSLESWVTNWWNTG SE FLNDIQEKSIIKKV ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSFNKSLESWVTNWWNTGQSENFLNDIQEKSIIKKVLELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy Swiss-Prot
Match: Q09G34 (Chloroplast envelope membrane protein OS=Platanus occidentalis OX=4403 GN=cemA PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL FNKSLESW+TNWWNT  SE FLNDIQEK++++K  ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSFNKSLESWITNWWNTRQSEIFLNDIQEKNVLEKFIELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy Swiss-Prot
Match: Q09MG6 (Chloroplast envelope membrane protein OS=Citrus sinensis OX=2711 GN=cemA PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WI L FNKSLESWVTNWWNT  SE FLNDIQEK+I++K  ELEELFLLDE+
Sbjct: 19 VVFLPWWIPLSFNKSLESWVTNWWNTSQSETFLNDIQEKAILEKFIELEELFLLDEM 75

[Close]
BLAST of CmoCh10G012690 vs. ExPASy Swiss-Prot
Match: Q0ZJ08 (Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL  NKSLESWVTNWWNT  SE FLNDIQEKSI++K  ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSLNKSLESWVTNWWNTRQSETFLNDIQEKSILEKFIELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy Swiss-Prot
Match: Q06RC0 (Chloroplast envelope membrane protein OS=Jasminum nudiflorum OX=126431 GN=cemA PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL F KS+ESWVTNWWNTG SE FLNDIQEKSI+++  ELEE+ LLDE+
Sbjct: 16 IVFLPWWISLSFTKSMESWVTNWWNTGQSEIFLNDIQEKSILERFIELEEILLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy TrEMBL
Match: A0A0S2IFX5 (Chloroplast envelope membrane protein OS=Cucurbita moschata OX=3662 GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy TrEMBL
Match: A0A0S2IE38 (Chloroplast envelope membrane protein OS=Cucurbita argyrosperma OX=34294 GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy TrEMBL
Match: A0A2H4T1X7 (envelope membrane protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy TrEMBL
Match: A0A0S2IGS1 (Chloroplast envelope membrane protein OS=Cucurbita pepo var. texana OX=37651 GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. ExPASy TrEMBL
Match: A0A0S2IG02 (Chloroplast envelope membrane protein OS=Cucurbita pepo subsp. fraterna OX=37649 GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

[Close]
BLAST of CmoCh10G012690 vs. TAIR 10
Match: ATCG00530.1 (CemA-like proton extrusion protein-related )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 0 

Query: 1   MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEINSF 60
           +VFLP  ISL  NKSL++W+TNWWNT   E FLNDIQEKS ++K  +LEELF LDE+   
Sbjct: 16  IVFLPWLISLCCNKSLKTWITNWWNTRQCETFLNDIQEKSFLEKFIQLEELFQLDEM--- 75

Query: 61  GLECWSEVTKASGKSQRLESWRDLELRQNGLNFGYTYLELTLSMSSYVATTILQFST 118
                            ++ + +  L+Q  L      ++     + Y   TIL FST
Sbjct: 76  -----------------IKEYPETNLQQFRLGIHKETIQFIKIHNEYNIHTILHFST 112

The following BLAST results are available for this feature:
BLAST of CmoCh10G012690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD771.6e-2187.72Chloroplast envelope membrane protein OS=Cucumis sativus OX=3659 GN=cemA PE=3 SV... [more]
Q09G345.5e-1975.44Chloroplast envelope membrane protein OS=Platanus occidentalis OX=4403 GN=cemA P... [more]
Q09MG61.2e-1877.19Chloroplast envelope membrane protein OS=Citrus sinensis OX=2711 GN=cemA PE=3 SV... [more]
Q0ZJ081.2e-1878.95Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV... [more]
Q06RC02.8e-1873.68Chloroplast envelope membrane protein OS=Jasminum nudiflorum OX=126431 GN=cemA P... [more]
BLAST of CmoCh10G012690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IFX58.0e-2191.23Chloroplast envelope membrane protein OS=Cucurbita moschata OX=3662 GN=cemA PE=3... [more]
A0A0S2IE388.0e-2191.23Chloroplast envelope membrane protein OS=Cucurbita argyrosperma OX=34294 GN=cemA... [more]
A0A2H4T1X78.0e-2191.23envelope membrane protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=cemA PE=... [more]
A0A0S2IGS18.0e-2191.23Chloroplast envelope membrane protein OS=Cucurbita pepo var. texana OX=37651 GN=... [more]
A0A0S2IG028.0e-2191.23Chloroplast envelope membrane protein OS=Cucurbita pepo subsp. fraterna OX=37649... [more]
BLAST of CmoCh10G012690 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00530.11.1e-1440.17CemA-like proton extrusion protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 1..57
e-value: 4.4E-5
score: 23.5
IPR004282Chloroplast envelope membrane protein, CemAPANTHERPTHR33650CHLOROPLAST ENVELOPE MEMBRANE PROTEIN-RELATEDcoord: 1..59
NoneNo IPR availablePANTHERPTHR33650:SF2CHLOROPLAST ENVELOPE MEMBRANE PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G012690.1CmoCh10G012690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015078 proton transmembrane transporter activity