CmoCh10G012420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G012420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH149-like
Location	Cmo_Chr10: 12527421 .. 12528305 (+)
RNA-Seq Expression	CmoCh10G012420
Synteny	CmoCh10G012420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGATTGCTTCGAACTTAGAAGAGTCGAGAAGTTCTGATTTCACGGAGCAGCGGCCGAGGAAACGCCGAAAAATCGAATCGGAGAATCAAGCGGCGGAGATTTGTAGCGCCAGATCTACGGATTTAAAAAGACGGTGGAGAACAGAGACGGAGCAACAGATTTACTCTTCGAAACTAGTCGAGGCACTTCACCGCGTAACTCGGAGAACCGCATCGCCGCCAGCGAAATCTTCGATCAACGGCCGAAAAGTCCGCGAGACGGCGGACACAGTCCTTGCCGTTGCCGCCAAAGGCAAGACTCGCTGGAGCAGAGCCATCCTGACGAATCGGCTCGAACTCAAACTCAAGAAGCACAAGAAGGCGAAGCCGGCTGGAAACTGTTTCCGGCCGAAGAAAGTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGGTACAGAGGAAAGTTCAAACTCTCGGCCGCCTGGTTCCCGGCTGCCGTAAAATCTCATTCCCGAACCTCCTTGACGAAGCTACGGATTATATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCACTCCGGCTGATCAACAACAAAGCTTCAGAACAAATTCGTAGAAGCCACATCCAAGGCTTGTAATGCCAGGTGTTTCCGTTTAATCTTTTTTTCTTTTTCTTTTTTCCTTTCACCAATATTATTCGTGTATTGTTATGAAATATTTTATTGTACACATTTCTAATCTTCATTTTTTTTTTCTTTTAATTTTTTTTAATTGAAAAGTGGCACCTAATTTTGATTCTCTTTAATATAATAAGAGAAAGATGATCACATGAACTTAGGTAATTAGGGTTTGGTAATTTTATTTTCTTTCC

mRNA sequence

ATGGATGCGATTGCTTCGAACTTAGAAGAGTCGAGAAGTTCTGATTTCACGGAGCAGCGGCCGAGGAAACGCCGAAAAATCGAATCGGAGAATCAAGCGGCGGAGATTTGTAGCGCCAGATCTACGGATTTAAAAAGACGGTGGAGAACAGAGACGGAGCAACAGATTTACTCTTCGAAACTAGTCGAGGCACTTCACCGCGTAACTCGGAGAACCGCATCGCCGCCAGCGAAATCTTCGATCAACGGCCGAAAAGTCCGCGAGACGGCGGACACAGTCCTTGCCGTTGCCGCCAAAGGCAAGACTCGCTGGAGCAGAGCCATCCTGACGAATCGGCTCGAACTCAAACTCAAGAAGCACAAGAAGGCGAAGCCGGCTGGAAACTGTTTCCGGCCGAAGAAAGTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGGTACAGAGGAAAGTTCAAACTCTCGGCCGCCTGGTTCCCGGCTGCCGTAAAATCTCATTCCCGAACCTCCTTGACGAAGCTACGGATTATATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCACTCCGGCTGATCAACAACAAAGCTTCAGAACAAATTCGTAGAAGCCACATCCAAGGCTTGTAATGCCAGGTGTTTCCGTTTAATCTTTTTTTCTTTTTCTTTTTTCCTTTCACCAATATTATTCGTGTATTGTTATGAAATATTTTATTGTACACATTTCTAATCTTCATTTTTTTTTTCTTTTAATTTTTTTTAATTGAAAAGTGGCACCTAATTTTGATTCTCTTTAATATAATAAGAGAAAGATGATCACATGAACTTAGGTAATTAGGGTTTGGTAATTTTATTTTCTTTCC

Coding sequence (CDS)

ATGGATGCGATTGCTTCGAACTTAGAAGAGTCGAGAAGTTCTGATTTCACGGAGCAGCGGCCGAGGAAACGCCGAAAAATCGAATCGGAGAATCAAGCGGCGGAGATTTGTAGCGCCAGATCTACGGATTTAAAAAGACGGTGGAGAACAGAGACGGAGCAACAGATTTACTCTTCGAAACTAGTCGAGGCACTTCACCGCGTAACTCGGAGAACCGCATCGCCGCCAGCGAAATCTTCGATCAACGGCCGAAAAGTCCGCGAGACGGCGGACACAGTCCTTGCCGTTGCCGCCAAAGGCAAGACTCGCTGGAGCAGAGCCATCCTGACGAATCGGCTCGAACTCAAACTCAAGAAGCACAAGAAGGCGAAGCCGGCTGGAAACTGTTTCCGGCCGAAGAAAGTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGGTACAGAGGAAAGTTCAAACTCTCGGCCGCCTGGTTCCCGGCTGCCGTAAAATCTCATTCCCGAACCTCCTTGACGAAGCTACGGATTATATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCACTCCGGCTGATCAACAACAAAGCTTCAGAACAAATTCGTAG

Protein sequence

MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSKLVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKHKKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAALQMQVRAMTAVAELLAGTPADQQQSFRTNS

Homology

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BLAST of CmoCh10G012420 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.2e-38
Identity = 100/189 (52.91%), Postives = 133/189 (70.37%), Query Frame = 0


Query: 13  SSDFTEQRPRKRRKIESENQAAEICSAR-STDLKRRWRTETEQQIYSSKLVEALHRVTRR 72
           S + T +  R+++   SE   AEI + R + +  +RW+T   QQIY+ KLVEAL RV +R
Sbjct: 8   SIENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQR 67

Query: 73  ---TASPPAKSSING--RKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKHKKAKPA 132
              T++      ++G  R++R+TAD VLA +A+G TRWSRAIL +R+  KLKKH+KAK +
Sbjct: 68  SSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKS 127

Query: 133 -GNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAALQMQVR 192
            GNC + +K        KLP V+RK++ LGRLVPGCRK+S PNLLDEATDYIAAL+MQVR
Sbjct: 128 TGNC-KSRKGLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVR 187

Query: 193 AMTAVAELL 195
           AM A+AELL
Sbjct: 188 AMEALAELL 195

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BLAST of CmoCh10G012420 vs. ExPASy Swiss-Prot
Match: Q9LSN7 (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.5e-32
Identity = 90/210 (42.86%), Postives = 131/210 (62.38%), Query Frame = 0


Query: 4   IASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSKLVE 63
           +++ L +  ++     R R++RK +S   + E   + S  L+ +WR+E +QQIYS+KLV 
Sbjct: 7   VSNQLLQPTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLE-KWRSEKQQQIYSTKLVH 66

Query: 64  ALHRVTRRTASPPAKSSIN----GRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKK 123
           AL R  R +  P + SS +    GR VRE AD  LAVAA+GKT WSRAIL+  ++LK +K
Sbjct: 67  AL-RELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRK 126

Query: 124 HKKAKPAG--------NCFRPKKVK---IRYETRKLPTVQRKVQTLGRLVPGCRKISFPN 183
           HK+ + +            R KK +   +R + + LP VQRKV+ L RLVPGCRK S P 
Sbjct: 127 HKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPV 186

Query: 184 LLDEATDYIAALQMQVRAMTAVAELLAGTP 199
           +L+E TDYIAA++MQ+R MTA+   ++ +P
Sbjct: 187 VLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

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BLAST of CmoCh10G012420 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.3e-30
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           M ++ S++E   S+     R +KR    S   +    S+ S ++  RWR+E +Q+IYS+K
Sbjct: 1   MASLISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAK 60

Query: 61  LVEALHRV----TRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELK 120
           L +AL +V    +  T+S P      G+ VRE AD  LAV+A+G+T WSRAIL NR++LK
Sbjct: 61  LFQALQQVRLNSSASTSSSPTAQK-RGKAVREAADRALAVSARGRTLWSRAILANRIKLK 120

Query: 121 LKKHKKAK-------------PAGNCFRPKKVKI-RYETRKLPTVQRKVQTLGRLVPGCR 180
            +K ++ +              + N  R ++V + R   + +P V RKV+ LGRLVPGC 
Sbjct: 121 FRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCG 180

Query: 181 KISFPNLLDEATDYIAALQMQVRAMTAVAELLA 196
           K S P +L+EATDYI AL+MQVRAM ++ +LL+
Sbjct: 181 KQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

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BLAST of CmoCh10G012420 vs. ExPASy Swiss-Prot
Match: Q9M9L6 (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 75/157 (47.77%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 44  LKRRWRTETEQQIYSSKLVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTR 103
           L RRWR  T Q++YS KL +AL R +RR+A+           VR+TAD VLA  A+G TR
Sbjct: 59  LSRRWRATTAQKVYSLKLYDALQR-SRRSAT-----------VRDTADKVLATTARGATR 118

Query: 104 WSRAILTNRLELKLKKHKKAKPAGNCFRPKKVKIR-----YETRKLPTVQRKVQTLGRLV 163
           WSRAIL +R    L++ +  KPA          IR        RKL  V  +V+ LG LV
Sbjct: 119 WSRAILVSRFGTSLRRRRNTKPAS----ALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLV 178

Query: 164 PGCRKISFPNLLDEATDYIAALQMQVRAMTAVAELLA 196
           PGCR+ + P LLDE  DYIAAL+MQVRAMTA++++L+
Sbjct: 179 PGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

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BLAST of CmoCh10G012420 vs. ExPASy TrEMBL
Match: A0A6J1HC54 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111461990 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK
Sbjct: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60

Query: 61  LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKH 120
           LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKH
Sbjct: 61  LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKH 120

Query: 121 KKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL 180
           KKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL
Sbjct: 121 KKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL 180

Query: 181 QMQVRAMTAVAELLAGTPADQQQSFRTNS 210
           QMQVRAMTAVAELLAGTPADQQQSFRTNS
Sbjct: 181 QMQVRAMTAVAELLAGTPADQQQSFRTNS 209

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BLAST of CmoCh10G012420 vs. ExPASy TrEMBL
Match: A0A6J1HY72 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111467921 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.6e-102
Identity = 202/209 (96.65%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           MDAIASNLEESRS DFTEQRP K RKIESENQAAEICSARSTDLKRRWRTE+EQQIYSSK
Sbjct: 1   MDAIASNLEESRSFDFTEQRPSKCRKIESENQAAEICSARSTDLKRRWRTESEQQIYSSK 60

Query: 61  LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKH 120
           LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAA+GKTRWSRAILTNRLELKLK H
Sbjct: 61  LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAEGKTRWSRAILTNRLELKLKNH 120

Query: 121 KKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL 180
           KKAKPAGNCFRPKK+KIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL
Sbjct: 121 KKAKPAGNCFRPKKLKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL 180

Query: 181 QMQVRAMTAVAELLAGTPADQQQSFRTNS 210
           QMQVRAMTAVAELLAGTPADQQQSFRTNS
Sbjct: 181 QMQVRAMTAVAELLAGTPADQQQSFRTNS 209

[Close]

BLAST of CmoCh10G012420 vs. ExPASy TrEMBL
Match: A0A6J1EU06 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111437734 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.2e-73
Identity = 156/209 (74.64%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           MD I S LEE R+SD  E+RP KRRKIESEN+ A+   A STDL+ RWRTE+EQ IYSSK
Sbjct: 1   MDVILSKLEELRNSDSMEERPCKRRKIESENRMADFHGAESTDLRTRWRTESEQYIYSSK 60

Query: 61  LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKH 120
           LV+ALHR+++++ASP A+SSI+GRKVR+TAD VLAVAAKGKTRWSRAIL+NRL+LKLKK 
Sbjct: 61  LVQALHRISQKSASPLARSSISGRKVRDTADRVLAVAAKGKTRWSRAILSNRLDLKLKKQ 120

Query: 121 KKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL 180
           KK KPAGNC   KK+++  +TRKLP VQRKV+TL RLVPGCRKISFPNLL+EATDYIAAL
Sbjct: 121 KKVKPAGNCRWTKKLEVS-KTRKLPAVQRKVRTLSRLVPGCRKISFPNLLEEATDYIAAL 180

Query: 181 QMQVRAMTAVAELLAGTPADQQQSFRTNS 210
           QMQVRAMTAVAE+L G PAD +QSFRTNS
Sbjct: 181 QMQVRAMTAVAEILGGAPAD-RQSFRTNS 207

[Close]

BLAST of CmoCh10G012420 vs. ExPASy TrEMBL
Match: A0A6J1JFX6 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111486520 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.7e-72
Identity = 156/209 (74.64%), Postives = 180/209 (86.12%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           MDAI S + E R+SD  E+RP KRRKIESEN+  +I  A STDL  RWRTE EQ IYSSK
Sbjct: 1   MDAIVSKMGEPRNSDSMEKRPCKRRKIESENRMPDIHGAESTDLITRWRTELEQYIYSSK 60

Query: 61  LVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKH 120
           LV+ALHR+++++A P A+SSINGRKVR+TAD VLAVAAKGKTRWSRAIL+NRL+LKLKK 
Sbjct: 61  LVQALHRISQKSALPLARSSINGRKVRDTADRVLAVAAKGKTRWSRAILSNRLDLKLKKQ 120

Query: 121 KKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAAL 180
           KK KPAGNC   KK+++  +TRKLP VQRKV+TLGRLVPGCRKISFPNLL+EATDYIAAL
Sbjct: 121 KKVKPAGNCRWTKKLEVP-KTRKLPAVQRKVRTLGRLVPGCRKISFPNLLEEATDYIAAL 180

Query: 181 QMQVRAMTAVAELLAGTPADQQQSFRTNS 210
           QMQVRAMTAVAE+LAG PAD +Q+FRTNS
Sbjct: 181 QMQVRAMTAVAEILAGAPAD-RQNFRTNS 207

[Close]

BLAST of CmoCh10G012420 vs. ExPASy TrEMBL
Match: A0A0A0LVP8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G555600 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.9e-66
Identity = 155/212 (73.11%), Postives = 173/212 (81.60%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTE-QRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSS 60
           MD I+SNL+   SSDFTE QRP KRRKI S     EI    S D  RRW TE+E +IYSS
Sbjct: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHS----PEISVDESADSIRRWTTESEHRIYSS 62

Query: 61  KLVEALHRVT-RRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTN-RLELKL 120
           KLV+ALHRVT +++AS P+ SSI+GRKVRETAD VLAVAAKGKTRWSRAILTN RL+ KL
Sbjct: 63  KLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKL 122

Query: 121 KKHKKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYI 180
           KK KK K  GNC R KK+KI+YE RKLPTVQRKV+TL RLVPGCRKISFPNLL+EA+DYI
Sbjct: 123 KKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYI 182

Query: 181 AALQMQVRAMTAVAELLAGTPADQQQSFRTNS 210
           +ALQMQVRAMTAVAELLAG P D +QS RTNS
Sbjct: 183 SALQMQVRAMTAVAELLAGAPGD-RQSLRTNS 209

[Close]

BLAST of CmoCh10G012420 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-39
Identity = 100/189 (52.91%), Postives = 133/189 (70.37%), Query Frame = 0


Query: 13  SSDFTEQRPRKRRKIESENQAAEICSAR-STDLKRRWRTETEQQIYSSKLVEALHRVTRR 72
           S + T +  R+++   SE   AEI + R + +  +RW+T   QQIY+ KLVEAL RV +R
Sbjct: 8   SIENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQR 67

Query: 73  ---TASPPAKSSING--RKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKHKKAKPA 132
              T++      ++G  R++R+TAD VLA +A+G TRWSRAIL +R+  KLKKH+KAK +
Sbjct: 68  SSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKS 127

Query: 133 -GNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAALQMQVR 192
            GNC + +K        KLP V+RK++ LGRLVPGCRK+S PNLLDEATDYIAAL+MQVR
Sbjct: 128 TGNC-KSRKGLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVR 187

Query: 193 AMTAVAELL 195
           AM A+AELL
Sbjct: 188 AMEALAELL 195

[Close]

BLAST of CmoCh10G012420 vs. TAIR 10
Match: AT3G17100.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-33
Identity = 90/210 (42.86%), Postives = 131/210 (62.38%), Query Frame = 0


Query: 4   IASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSKLVE 63
           +++ L +  ++     R R++RK +S   + E   + S  L+ +WR+E +QQIYS+KLV 
Sbjct: 7   VSNQLLQPTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLE-KWRSEKQQQIYSTKLVH 66

Query: 64  ALHRVTRRTASPPAKSSIN----GRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKK 123
           AL R  R +  P + SS +    GR VRE AD  LAVAA+GKT WSRAIL+  ++LK +K
Sbjct: 67  AL-RELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRK 126

Query: 124 HKKAKPAG--------NCFRPKKVK---IRYETRKLPTVQRKVQTLGRLVPGCRKISFPN 183
           HK+ + +            R KK +   +R + + LP VQRKV+ L RLVPGCRK S P 
Sbjct: 127 HKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPV 186

Query: 184 LLDEATDYIAALQMQVRAMTAVAELLAGTP 199
           +L+E TDYIAA++MQ+R MTA+   ++ +P
Sbjct: 187 VLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

[Close]

BLAST of CmoCh10G012420 vs. TAIR 10
Match: AT3G17100.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-33
Identity = 90/210 (42.86%), Postives = 131/210 (62.38%), Query Frame = 0


Query: 4   IASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSKLVE 63
           +++ L +  ++     R R++RK +S   + E   + S  L+ +WR+E +QQIYS+KLV 
Sbjct: 7   VSNQLLQPTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLE-KWRSEKQQQIYSTKLVH 66

Query: 64  ALHRVTRRTASPPAKSSIN----GRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKK 123
           AL R  R +  P + SS +    GR VRE AD  LAVAA+GKT WSRAIL+  ++LK +K
Sbjct: 67  AL-RELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRK 126

Query: 124 HKKAKPAG--------NCFRPKKVK---IRYETRKLPTVQRKVQTLGRLVPGCRKISFPN 183
           HK+ + +            R KK +   +R + + LP VQRKV+ L RLVPGCRK S P 
Sbjct: 127 HKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPV 186

Query: 184 LLDEATDYIAALQMQVRAMTAVAELLAGTP 199
           +L+E TDYIAA++MQ+R MTA+   ++ +P
Sbjct: 187 VLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

[Close]

BLAST of CmoCh10G012420 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-31
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           M ++ S++E   S+     R +KR    S   +    S+ S ++  RWR+E +Q+IYS+K
Sbjct: 1   MASLISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAK 60

Query: 61  LVEALHRV----TRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELK 120
           L +AL +V    +  T+S P      G+ VRE AD  LAV+A+G+T WSRAIL NR++LK
Sbjct: 61  LFQALQQVRLNSSASTSSSPTAQK-RGKAVREAADRALAVSARGRTLWSRAILANRIKLK 120

Query: 121 LKKHKKAK-------------PAGNCFRPKKVKI-RYETRKLPTVQRKVQTLGRLVPGCR 180
            +K ++ +              + N  R ++V + R   + +P V RKV+ LGRLVPGC 
Sbjct: 121 FRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCG 180

Query: 181 KISFPNLLDEATDYIAALQMQVRAMTAVAELLA 196
           K S P +L+EATDYI AL+MQVRAM ++ +LL+
Sbjct: 181 KQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

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BLAST of CmoCh10G012420 vs. TAIR 10
Match: AT3G06590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-31
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 1   MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSK 60
           M ++ S++E   S+     R +KR    S   +    S+ S ++  RWR+E +Q+IYS+K
Sbjct: 1   MASLISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAK 60

Query: 61  LVEALHRV----TRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELK 120
           L +AL +V    +  T+S P      G+ VRE AD  LAV+A+G+T WSRAIL NR++LK
Sbjct: 61  LFQALQQVRLNSSASTSSSPTAQK-RGKAVREAADRALAVSARGRTLWSRAILANRIKLK 120

Query: 121 LKKHKKAK-------------PAGNCFRPKKVKI-RYETRKLPTVQRKVQTLGRLVPGCR 180
            +K ++ +              + N  R ++V + R   + +P V RKV+ LGRLVPGC 
Sbjct: 121 FRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCG 180

Query: 181 KISFPNLLDEATDYIAALQMQVRAMTAVAELLA 196
           K S P +L+EATDYI AL+MQVRAM ++ +LL+
Sbjct: 181 KQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

The following BLAST results are available for this feature:

BLAST of CmoCh10G012420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80482	7.2e-38	52.91	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]
Q9LSN7	4.5e-32	42.86	Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=...	[more]
Q9C8Z9	7.3e-30	40.38	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]
Q9M9L6	1.8e-25	47.77	Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=...	[more]

BLAST of CmoCh10G012420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HC54	6.4e-106	100.00	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111461990 ...	[more]
A0A6J1HY72	9.6e-102	96.65	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111467921 PE...	[more]
A0A6J1EU06	4.2e-73	74.64	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111437734 ...	[more]
A0A6J1JFX6	2.7e-72	74.64	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111486520 PE...	[more]
A0A0A0LVP8	2.9e-66	73.11	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G555600 PE=4 S...	[more]

BLAST of CmoCh10G012420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09250.1	5.1e-39	52.91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G17100.1	3.2e-33	42.86	sequence-specific DNA binding transcription factors	[more]
AT3G17100.2	3.2e-33	42.86	sequence-specific DNA binding transcription factors	[more]
AT3G06590.1	5.2e-31	40.38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.2	5.2e-31	40.38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..31
None	No IPR available	PANTHER	PTHR33124:SF69	TRANSCRIPTION FACTOR BHLH149	coord: 17..205
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 17..205
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 131..180 score: 9.102035
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 138..189 e-value: 7.54881E-17 score: 69.5736
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 134..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G012420.1	CmoCh10G012420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding