CmoCh10G012150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G012150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNKAP family protein isoform X2
LocationCmo_Chr10: 11892501 .. 11895699 (+)
RNA-Seq ExpressionCmoCh10G012150
SyntenyCmoCh10G012150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCAATTATAGTAAATAGAATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGTAGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGGTCTGGAGAAAGACTTTGATGGTTTAGATAGAGTGAAGAAAATCTGCTTGCAATATTTACCCGTAGATTTTGAGGCTCTACATCAAGAAGATTCAACATCAATATGTGTTTACTTCCATTGTGTAAACTCCATTGTGTAAGAAATGAGAAGACATGACGAGAAGGTAGAAGAAGTACGAGTTGTGGAGAAGATTATGTGATTTTTACACTCAAGGTTTGACTACATTGCTGTGGAAGTTGAAGAATCTAATAAACTTGAAGAAATATTAGTAGAGGAGCTTCAAGACTCTATACAAGTCTATGAAGAAAGAGGCTTAGAGAAAGAAGAAAGAAGACGTATGGAGCAAGCACTGCAAGCCAACTCTTCCCAAAAGATGGATGGCTAGCCAACTCTTCCCAAAAGAAGGATGGCTTCTCGAAAGGAGGCTACCTTGAGTAAGGGTAGCCTTGGTGGTCAAAATGGAGGACGAGGTGGTTGCAATAAGTAATCTAATTTATGAAATAGCAATCACATTGATGATAGTAAAGGGAATAGTCATAGGAGCAATGAGGCGTGTGCTTGAGGTCTGGTCGTGGATGGGTCCTTGTCGACCATGTCCATGACTGCGGCCTCGGCTAGGCACCTCATAGCTTCCACGACCATTCCCTTTACTATCATCGGTATGGTTGCTGCTTTGTTCATTAGAGTGGTTATCGTGACCATCTCGTTCTTCCTTTTGGCCACCACGTTTACCTCTTCATAAACTTGTAGAGGGCCTTGAGGCTCCTTCGCTGATATCTTCTCAAGAGTATGAGATTCTTTAATTGTCACGACAATAGAGTCAACTTTGAGTGTAAAGATTCCAGGATTTTCTCCACAAATTGTACTTCTACCTTCTCCCCATGTCTCCATTTATTACCCTAGTTTATATAGTAGAAGTAATCACAAATTGATTCCGAACCTTTTTGTTGTAGGGCTTCGAAATCTGCTAGCAAGGCTTTCTCCAATACCTCTTAAGCTTTCTTGTGCATAGTGCCTTCTTCTCCTTCTTCATCTCCTCCTTGAATCCATTCATCATCGCGTCCCATGCTCCCGAAGATCCCAACAAGGCCTCCATTTGGATACTCTATTTACCATAATTAACTTGATGAAGTCATATTTAACTTAGCTTTGATACCAATTTTGTTATCTTTTATAGGTTTTTTGGAACATCCTCCATGCCATACATATACCAAATACTAAATAACGAATTTACCTAATACTTGTACTATCGTTATAGTGATATATGAATAATCTAATACATGTATCAATCAAATGAATCTAACGCCCATGACTTTTCAATTATTAACCAAGTACATGGATCTCTAATGTACATATATCTCCCCAATTTATGTATCCATAAATACATGAAACAAGTTTAATATCTTACTGCTTTTACTCGTATTTACATCCTTTTGATTATTACTTCAGAACCCTTTTGATTTATTACTTCAGAACCCTTTTGATTTATTACTTCAGAACATATTGTGATTGGAGATCTAGCTTCTAACACATGCATCCAATGTCTTAGATTTTTGCTTCAATGTATTTTTAGTCTTTGGTAGGCCTGATTTATCCCAACGCAATAGTGTAAGACATGTACCTTTGTATATTTTAAGAATGGGCATCAAGATAATATTAGTTTTCTAATCATTACTTGAGGCATAAAGACTCCAAGCATCATGTATAAAAGTTCTAAACCACTTATAATCTAAAGAAGGCGTAAGCTTTGAGGCTAAAAAATTTGAGCCATTCTAAGACAAGCCCTTTAGACTGAGGCTGAAAGTATCGATCTATTTGCCAAATGATCTTATTGTTTCTAGTCCTGCAATCTTTAGAATGCATCTATAGTTGGTTTTGTTTTTGGAGTGGTTTCTGAATTGGATATAATATGAGATGTTTCTGTGATCATTTACTGATTGATTCTTTGAAATTGGAGTTGGGGTCCGTGTCATGATGATCGGGCTGTTCCAAGGAACCATAAGAGAAGTATAGAAACAGCCAGAAGAGAGTAGTAGCCCTGTGCAGCTTTCCAAGGTTCCCTTCACAGCATTGTTTATTTTCAATTCATTATTTTTCGACATCTCTTATCTTAACTTTGCAGTTTCTTCATCTAATTTAACAGTTTTTATCGCGGGAGAAGGATGATGGTACTCGGCGGAGTGCTGTCTCTGGCAAAAAGGTGACAGATCCATCTCTTAGTTGTTTTTGCACATGTTTTGGAGTGCCTTTGACATGGCTAAGAACACTTTTTCCTTGGCCAAAAGCACTTCTCACTCACTTAGCAGGTCTGGTAACAAAGTTCTAGTTTTCATTATTATGATTACCTTTCAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGGCTGTGTATTAAGAATGGAGGAAAGAGGCATTATTAGCTGCTGCATGGAAAAATTTCAGTTCAATCAACAGTTGTGTGACATTCAAGCCTGTGAACTTTCTTCTCCCTTTGATGCTTTGATGTTTGATGCTTTGATGCATATGGATCAAGATCTTGTTTTAATTCCTTATGGACAGGAATTGAAATTGAAATGGAAATGGAAAATGACTTACTTTGTTTGATGGGATGGAATGGGATGATGAATGATTGATTGTTAGTTCTTATGATCCGATTGTGTAAAACGCTCAAGCGCTGCCTCCTTGCCAAGGCATTGTTTTTACAATGTTCACTAAAAAAGTTTCATGACAATCTCTCCATTGCCCTCCTTCCACGCCGTGTTGCAGCTGAGAGACCACTTATGGCAGGAGGAGGGTCGATCTCGTAGGGTTGAGATCGAACCAACTGATAGTCGACAAGTGATACTAACATCCAGTGACTATCACGGTCATGTTTATCCAAGACGTGTTGTCCAAGTTGCACGTCCATTACATGCCAAAACTCTTGCCTAGTAACTTTATCG

mRNA sequence

ATGGGACCAATTATAGTAAATAGAATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGTAGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGAAACAGCCAGAAGAGAGTAGTAGCCCTGTGCAGCTTTCCAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGGCTGTGTATTAAGAATGGAGGAAAGAGGCATTATTAGCTGCTGCATGGAAAAATTTCAGTTCAATCAACAGTTGTGTGACATTCAAGCCTGTGAACTTTCTTCTCCCTTTGATGCTTTGATGTTTGATGCTTTGATGCATATGGATCAAGATCTTGTTTTAATTCCTTATGGACAGGAATTGAAATTGAAATGGAAATGGAAAATGACTTACTTTGTTTGATGGGATGGAATGGGATGATGAATGATTGATTGTTAGTTCTTATGATCCGATTGTGTAAAACGCTCAAGCGCTGCCTCCTTGCCAAGGCATTGTTTTTACAATGTTCACTAAAAAAGTTTCATGACAATCTCTCCATTGCCCTCCTTCCACGCCGTGTTGCAGCTGAGAGACCACTTATGGCAGGAGGAGGGTCGATCTCGTAGGGTTGAGATCGAACCAACTGATAGTCGACAAGTGATACTAACATCCAGTGACTATCACGGTCATGTTTATCCAAGACGTGTTGTCCAAGTTGCACGTCCATTACATGCCAAAACTCTTGCCTAGTAACTTTATCG

Coding sequence (CDS)

ATGGGACCAATTATAGTAAATAGAATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGTAGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGAAACAGCCAGAAGAGAGTAGTAGCCCTGTGCAGCTTTCCAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

Protein sequence

MGPIIVNRMEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEKQPEESSSPVQLSKILLKLDKSKEDKAEENRRNELLKFLNSSFD
Homology
[Close]
BLAST of CmoCh10G012150 vs. ExPASy TrEMBL
Match: A0A1S3BQ85 (peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-10
Identity = 46/73 (63.01%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 55  HAKSSENAWEKQPEESSSPVQLS-------------------KILLKLDKSKEDKAEENR 109
           H +    A EKQPEESSSPVQLS                   KILLKLDKSKEDKAEEN+
Sbjct: 110 HKRRKHKAKEKQPEESSSPVQLSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENK 169

[Close]
BLAST of CmoCh10G012150 vs. ExPASy TrEMBL
Match: A0A0A0LVZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 45/73 (61.64%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 55  HAKSSENAWEKQPEESSSPVQLS-------------------KILLKLDKSKEDKAEENR 109
           H +    A EKQPEESSSPVQLS                   KILLKLDKSKEDKAEE +
Sbjct: 107 HKRRKHKAKEKQPEESSSPVQLSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETK 166

[Close]
BLAST of CmoCh10G012150 vs. ExPASy TrEMBL
Match: A0A6J1HZG5 (probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 55/105 (52.38%), Postives = 59/105 (56.19%), Query Frame = 0 

Query: 28  EEEMKKEKKALFTIHQRVDGTTFE-----LIVHAKSSENAWEKQPEE-SSSPVQLS---- 87
           E EM    K     H++ DGT  E        H +    A EKQPEE SSSPVQLS    
Sbjct: 80  EPEMSGRSKR----HKKNDGTKKERERSKSQHHKRRKHKAKEKQPEERSSSPVQLSKFLA 139

Query: 88  --------------KILLKLDKSKEDKAEENRRNELLKFLNSSFD 109
                         KILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 140 REDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 180

[Close]
BLAST of CmoCh10G012150 vs. ExPASy TrEMBL
Match: A0A6J1EV15 (serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 55/105 (52.38%), Postives = 59/105 (56.19%), Query Frame = 0 

Query: 28  EEEMKKEKKALFTIHQRVDGTTFE-----LIVHAKSSENAWEKQPEE-SSSPVQLS---- 87
           E EM    K     H++ DGT  E        H +    A EKQPEE SSSPVQLS    
Sbjct: 80  EPEMSGRSKR----HKKNDGTKKERERSKSRHHKRRKHKAKEKQPEERSSSPVQLSKFLA 139

Query: 88  --------------KILLKLDKSKEDKAEENRRNELLKFLNSSFD 109
                         KILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 140 REDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 180

[Close]
BLAST of CmoCh10G012150 vs. ExPASy TrEMBL
Match: A0A6J1I4D4 (NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 54/104 (51.92%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 28  EEEMKKEKKALFTIHQRVDGT----TFELIVHAKSSENAWEKQPEE-SSSPVQLS----- 87
           E EM    K     H++ DGT      +   H +    A EKQPEE SSSPVQLS     
Sbjct: 80  EPEMSGRSKR----HKKNDGTKKRERSKSQHHKRRKHKAKEKQPEERSSSPVQLSKFLAR 139

Query: 88  -------------KILLKLDKSKEDKAEENRRNELLKFLNSSFD 109
                        KILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 140 EDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 179

[Close]
BLAST of CmoCh10G012150 vs. TAIR 10
Match: AT5G27860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-08
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 64  EKQPEESSSPVQLSKILLKLDKSKEDKAEENRRNELLKFLNSSFD 109
           +K   E  S V   KILLK+DKSKEDKA E++RNELLKFLN+SFD
Sbjct: 133 DKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

[Close]
BLAST of CmoCh10G012150 vs. TAIR 10
Match: AT5G27860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-08
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 64  EKQPEESSSPVQLSKILLKLDKSKEDKAEENRRNELLKFLNSSFD 109
           +K   E  S V   KILLK+DKSKEDKA E++RNELLKFLN+SFD
Sbjct: 133 DKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

The following BLAST results are available for this feature:
BLAST of CmoCh10G012150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh10G012150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BQ852.6e-1063.01peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE... [more]
A0A0A0LVZ31.3e-0961.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1[more]
A0A6J1HZG52.9e-0952.38probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima ... [more]
A0A6J1EV152.9e-0952.38serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662... [more]
A0A6J1I4D44.9e-0951.92NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 ... [more]
BLAST of CmoCh10G012150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27860.17.1e-0866.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G27860.27.1e-0866.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G012150.1CmoCh10G012150.1mRNA