CmoCh10G012120 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G012120
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L18
LocationCmo_Chr10: 11867832 .. 11870330 (+)
RNA-Seq ExpressionCmoCh10G012120
SyntenyCmoCh10G012120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCCTCTAAATCTCGCTACTTAATCGTTGCCTTCTCTGTTTGAATTTCCACCTTTAATGGCTGATTTGTATTTCTTGTTTGGATTTTACTTGTTGCTGTGATTAGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGGTACTTGTTAATCGATATTTCTCGTGCATATGCACTTTTATTTGATCTATTGATTCTTAAATATGCCTGATTGTTTGAGTCGCTTAATTGTGTTTTGTTGGATTGTCTTTGAGATGCTTCCATTGAAAATTAACTGAAATGTCAGTCGGTTGGATTTTTGGTTTCTGTAAACGGAGTTTTCCCTCATTATTTGATTCATCTTCTAAGTTTAATTTCGCTCTGTCTGCGTTGCGGTTGTCAAATCCGTTTTAAATTGCTAGCAGTTTATAAGCCTAATTTTTGTATTTTTTTTCGAACGAATTGGTTTCGATGACTGGTCTTTCTGCTTTGATGATATTTGTGAATCCCAGCTCATGATGAGATCTTTTGTAGGTCGGGGAATAGTCTTTTACCCACAATATCTGAGCCTTGCGTCTAGTTTTAGTGTCATTTTTTCTATCCATAACATGTTTCCACAATTGAAGTAAATTATTGCTTTTTCCTTTTTAGGATAAGAAAATACTCAAATGTAAGTGGATAATACGTAAATTACTATGTTACCTATATTACTTGCCCTTTTTGGGTACTGAATATATCAATATACCTCGATTTGCATGAGCTATACTTCTCGGATTTTGTTTGATTTTGTTGGAAAAGCATAAAATGTTCCCAGTGATGATTAACTTGACCATGCTAATGCTGATCACTTTGTGATTAATCCTTACTTTAATTGTTCTGAGGGAACTGGCTCCAATATTTCTATATTTTGAGCGGATGGGCATCGTTTTTTTATGGTGATTCTGTCATGGGAGAGGGGAGGGTACTTAATTTACCTTCATGTATTTTATGCATGAAGTGTAATACGTTTTTCTACTTGTGTGTTTTCTTGCAAATACACACATCACCTGGCCCGCATTCACTAAACAAATTATTTCTCCTATTTCTTATCAGCTTTACCGCTTCCTTGTTCGTCGTACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGTTGGTTAATTATGTAGTTTTCTAATTTTATTTGGGTTGTTTTTTAGGATTGTGCATATTTGATATATCTGAAACTCTGCACATTTCCTTGTGATGTAATAGGAAAGTAAGATTGCTGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCACCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTTGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTATGGCACTTTTCATTGATACTTCTGTTAACACTGTTTTTGAATGTGCCGAATGGGCTTTTTTTGGGTTCAAGTAATGTAGTCCATTTGCATTTTAAACTTGGTGCTACACTTTGGGATTAATATATTGTACTGTTTTCAGTTAGCAATGTTTATCCATATATCATCTCTTGTAGACTGTAGATAAAAGCTAACGAGTTTCCAGCAATAATGGTTTAGTAGTTCTGTAGGGGTTTGAATCATCTGTTGGCTACATTTTTATTCTTTTGGTCCCATCTGCAGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCTAGTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCGTAATATTGTTGATTACGAATCGATCGAATGCTACTCAGCGAGACTTTTATAGTCCTTTTGTTTGATTTTGTGATGGCCATTTTGTGTCTGGTTCGTGTTAGAGATATCTATCTAGAATCCATTTGATTTGATGATGGTCATAAAAACTTGGATCATATTGCAATCCATTTGATTGATTAGCGATTATTGCAAGTTTTCAACTCAACTCCTTGGATGTTGTTTGATATGAATTTTGAAGGTGGAGAGGGGAAGGAGACTTGTGGACCCTCTACATACAAGATCTCTAATATGAACAAGACACTAATGAACTTCTTGAAGGAAGTTCATTCAAATTATCAACTCAAGAATTTGTAATCAATTTGACATTAGTCAAGTCTCCAAATAAATGCAA

mRNA sequence

ATGGTAGCCTCTAAATCTCGCTACTTAATCGTTGCCTTCTCTGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGTACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCTGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCACCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTTGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCTAGTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCGTAATATTGTTGATTACGAATCGATCGAATGCTACTCAGCGAGACTTTTATAGTCCTTTTGTTTGATTTTGTGATGGCCATTTTGTGTCTGGTTCGTGTTAGAGATATCTATCTAGAATCCATTTGATTTGATGATGGTCATAAAAACTTGGATCATATTGCAATCCATTTGATTGATTAGCGATTATTGCAAGTTTTCAACTCAACTCCTTGGATGTTGTTTGATATGAATTTTGAAGGTGGAGAGGGGAAGGAGACTTGTGGACCCTCTACATACAAGATCTCTAATATGAACAAGACACTAATGAACTTCTTGAAGGAAGTTCATTCAAATTATCAACTCAAGAATTTGTAATCAATTTGACATTAGTCAAGTCTCCAAATAAATGCAA

Coding sequence (CDS)

ATGGTAGCCTCTAAATCTCGCTACTTAATCGTTGCCTTCTCTGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGTACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCTGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCACCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTTGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGA

Protein sequence

MVASKSRYLIVAFSGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV
Homology
[Close]
BLAST of CmoCh10G012120 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-86
Identity = 160/186 (86.02%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRL++F  GKE KIAV+VGTITDD+RV+E+P +KV ALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 195 SRGYRV 201
           SRG++V
Sbjct: 182 SRGFKV 187

[Close]
BLAST of CmoCh10G012120 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.9e-85
Identity = 157/186 (84.41%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRL++F  GK+ KIAV+VGTITDD+RV+E+P +KV ALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 195 SRGYRV 201
           SRG++V
Sbjct: 182 SRGFKV 187

[Close]
BLAST of CmoCh10G012120 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.3e-80
Identity = 151/184 (82.07%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 17  DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLS 76
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT S FNAVILKRLFMS+VN+PPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 77  LSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLTFD 136
           LSRLI++ +GKE KI VVVG +TDDIRVY+VP +KV AL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 137 QLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSR 196
           QLALR PL  +TVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 197 GYRV 201
           G+RV
Sbjct: 181 GFRV 183

[Close]
BLAST of CmoCh10G012120 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 281.2 bits (718), Expect = 9.3e-75
Identity = 142/187 (75.94%), Postives = 163/187 (87.17%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT SKFNAVILKRLFMS+VNK P
Sbjct: 2   GIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VP L V ALRFTE+ARARI KAGGECLT
Sbjct: 62  LSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLT 121

Query: 135 FDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 194
           FDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K E ARG+R
Sbjct: 122 FDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRR 181

Query: 195 NSRGYRV 201
            SRG++V
Sbjct: 182 RSRGFKV 188

[Close]
BLAST of CmoCh10G012120 vs. ExPASy Swiss-Prot
Match: Q4GXG7 (60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.3e-64
Identity = 119/177 (67.23%), Postives = 150/177 (84.75%), Query Frame = 0 

Query: 25  KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFT 84
           +K +RT PKS D+YL+LLVKLYR+L RRTG+KFN +ILKRLFMS++ +PP+SLS++++F 
Sbjct: 11  RKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFM 70

Query: 85  K--GKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLTFDQLALRA 144
           K  G+E   AV+VGT+TDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+
Sbjct: 71  KKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRS 130

Query: 145 PLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYR 200
           P G  TVLL+G +N+REAVKHFGPAPGVPHSH+KP VRSKGRKFERARG+R S GY+
Sbjct: 131 PTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187

[Close]
BLAST of CmoCh10G012120 vs. ExPASy TrEMBL
Match: A0A6J1HAG3 (60S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462085 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.6e-96
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 181

Query: 195 SRGYRV 201
           SRGYRV
Sbjct: 182 SRGYRV 187

[Close]
BLAST of CmoCh10G012120 vs. ExPASy TrEMBL
Match: A0A6J1HVV8 (60S ribosomal protein L18-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467927 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.4e-95
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVP LKVAALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 181

Query: 195 SRGYRV 201
           SRGYRV
Sbjct: 182 SRGYRV 187

[Close]
BLAST of CmoCh10G012120 vs. ExPASy TrEMBL
Match: A0A6J1I1I5 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111469018 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 185/190 (97.37%), Postives = 186/190 (97.89%), Query Frame = 0 

Query: 11  VAFSGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRV 70
           +A  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRV
Sbjct: 25  LAAMGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRV 84

Query: 71  NKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGG 130
           NKPPLSLSRLIQF KGKESKIAVVVGTITDDIRVYEVP LKVAALRFTETARARIEKAGG
Sbjct: 85  NKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGG 144

Query: 131 ECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERAR 190
           ECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERAR
Sbjct: 145 ECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERAR 204

Query: 191 GKRNSRGYRV 201
           GKRNSRGYRV
Sbjct: 205 GKRNSRGYRV 214

[Close]
BLAST of CmoCh10G012120 vs. ExPASy TrEMBL
Match: A0A6J1C2L8 (60S ribosomal protein L18-2-like OS=Momordica charantia OX=3673 GN=LOC111007696 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.1e-94
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVP LKVAALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSH+KPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 195 SRGYRV 201
           SRG+RV
Sbjct: 182 SRGFRV 187

[Close]
BLAST of CmoCh10G012120 vs. ExPASy TrEMBL
Match: A0A6J1EUD5 (60S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437842 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 183/186 (98.39%), Postives = 183/186 (98.39%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSRVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSRVNKPP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRLIQF KGKESKIAVVVGTITDDIRVYEVP LKVAALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 181

Query: 195 SRGYRV 201
           SRGYRV
Sbjct: 182 SRGYRV 187

[Close]
BLAST of CmoCh10G012120 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 320.1 bits (819), Expect = 1.3e-87
Identity = 160/186 (86.02%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRL++F  GKE KIAV+VGTITDD+RV+E+P +KV ALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 195 SRGYRV 201
           SRG++V
Sbjct: 182 SRGFKV 187

[Close]
BLAST of CmoCh10G012120 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 314.3 bits (804), Expect = 7.0e-86
Identity = 157/186 (84.41%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 15  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPP 74
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 75  LSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIEKAGGECLT 134
           LSLSRL++F  GK+ KIAV+VGTITDD+RV+E+P +KV ALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 135 FDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRN 194
           FDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 195 SRGYRV 201
           SRG++V
Sbjct: 182 SRGFKV 187

[Close]
BLAST of CmoCh10G012120 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-50
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 0 

Query: 67  MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIE 126
           MS+VNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VP L V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 127 KAGGECLTFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 186
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 187 FERARGKRNSRGYRV 201
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]
BLAST of CmoCh10G012120 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-50
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 0 

Query: 67  MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPPLKVAALRFTETARARIE 126
           MS+VNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VP L V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 127 KAGGECLTFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 186
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 187 FERARGKRNSRGYRV 201
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:
BLAST of CmoCh10G012120 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427911.8e-8686.0260S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2[more]
Q940B09.9e-8584.4160S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1[more]
O657297.3e-8082.0760S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV... [more]
O222549.3e-7575.94Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P... [more]
Q4GXG77.3e-6467.2360S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1[more]
BLAST of CmoCh10G012120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HAG37.6e-96100.0060S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462085 P... [more]
A0A6J1HVV86.4e-9599.4660S ribosomal protein L18-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467927 PE=... [more]
A0A6J1I1I52.4e-9497.3760S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111469018 PE=3 SV=... [more]
A0A6J1C2L84.1e-9498.3960S ribosomal protein L18-2-like OS=Momordica charantia OX=3673 GN=LOC111007696 ... [more]
A0A6J1EUD51.2e-9398.3960S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437842 P... [more]
BLAST of CmoCh10G012120 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05590.11.3e-8786.02ribosomal protein L18 [more]
AT5G27850.17.0e-8684.41Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.12.1e-5071.85Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.22.1e-5071.85Ribosomal protein L18e/L15 superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.100.10.10coord: 14..200
e-value: 1.7E-98
score: 329.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..200
NoneNo IPR availablePANTHERPTHR10934:SF16BNAC02G39900D PROTEINcoord: 11..200
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 15..200
e-value: 4.8E-94
score: 313.0
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 11..200
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 33..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G012120.1CmoCh10G012120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome