CmoCh10G012030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G012030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SOSS complex subunit B homolog
Location	Cmo_Chr10: 11772495 .. 11772914 (-)
RNA-Seq Expression	CmoCh10G012030
Synteny	CmoCh10G012030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAACACACAATTCATAGTATTAGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGACATGCCAATCACTTGTGGCGGACGAAACAGCAGCAGTTCATTTCCAGCTATGGGGAGAAGAGTGCGATGTCGTTGAGCCGAGCGACATCCTACGCTTGACGAATGGGATATTTTCCTACAGCCGAAACAGTAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCCGTTCTATCTCCATATTCTCGCATCTTTCCGCCAATCCGTTGA

mRNA sequence

ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAACACACAATTCATAGTATTAGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGACATGCCAATCACTTGTGGCGGACGAAACAGCAGCAGTTCATTTCCAGCTATGGGGAGAAGAGTGCGATGTCGTTGAGCCGAGCGACATCCTACGCTTGACGAATGGGATATTTTCCTACAGCCGAAACAGTAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCCGTTCTATCTCCATATTCTCGCATCTTTCCGCCAATCCGTTGA

Coding sequence (CDS)

ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAACACACAATTCATAGTATTAGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGACATGCCAATCACTTGTGGCGGACGAAACAGCAGCAGTTCATTTCCAGCTATGGGGAGAAGAGTGCGATGTCGTTGAGCCGAGCGACATCCTACGCTTGACGAATGGGATATTTTCCTACAGCCGAAACAGTAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCCGTTCTATCTCCATATTCTCGCATCTTTCCGCCAATCCGTTGA

Protein sequence

MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

Homology

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BLAST of CmoCh10G012030 vs. ExPASy Swiss-Prot
Match: Q54X41 (SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-15
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           +I + ++ P ++ N+N  FIVL+KG  T + +    Q LVAD TA+++  +W    + ++
Sbjct: 3   LIKVNEIKPYSK-NINCVFIVLDKGPPTKKKEGTIYQVLVADSTASINMTVWDALGEQIQ 62

Query: 62  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHW--VPDTTNS 121
           P DILRL  G +S      L L  GK G IEK+GEF   FVE PN+S   W    D  N 
Sbjct: 63  PGDILRLKGG-YSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLWNVHQDPNNP 122

Query: 122 KKYVKESVLSPYSRIFP 137
           K  V     SP+ +  P
Sbjct: 123 KNMVATPKPSPHKQQQP 137

[Close]

BLAST of CmoCh10G012030 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 5   LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGC-LTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of CmoCh10G012030 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 5   LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGC-LTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of CmoCh10G012030 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 5   LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGC-LTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of CmoCh10G012030 vs. ExPASy Swiss-Prot
Match: Q3SWT1 (SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 5   LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGC-LTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of CmoCh10G012030 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK
Sbjct: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of CmoCh10G012030 vs. ExPASy TrEMBL
Match: A0A6J1HZ66 (SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.7e-70
Identity = 134/139 (96.40%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMISLKDLVPAAQNNVNTQFIVLEKGMTTM+GQNKTCQSLVADETAAVHFQLWGEECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMDGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDILRL NGIFSYSRN+NLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDT+NSK
Sbjct: 61  EPSDILRLMNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTSNSK 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESV+SPYSRIFPPIR
Sbjct: 121 KYVKESVVSPYSRIFPPIR 139

[Close]

BLAST of CmoCh10G012030 vs. ExPASy TrEMBL
Match: A0A1S3BPN4 (SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.1e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61

Query: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 122 KYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of CmoCh10G012030 vs. ExPASy TrEMBL
Match: A0A5D3CIR3 (SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004040 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.1e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61

Query: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 122 KYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of CmoCh10G012030 vs. ExPASy TrEMBL
Match: A0A0A0LW03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.1e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of CmoCh10G012030 vs. TAIR 10
Match: AT5G63690.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-48
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           M + LKD+VPAAQNN++T+FI+L+K  ++       C +L ADETAAVH QLWG+ECD  
Sbjct: 1   MQLFLKDIVPAAQNNIDTRFIILDKAKSSAANGKNYCIALAADETAAVHIQLWGDECDAF 60

Query: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           E  DI++LTNGIFSY RNS L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N K
Sbjct: 61  EAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPK 120

Query: 121 KYVKESVLSPYSRIFPPI 139
           +Y++  V+S YSRIFPP+
Sbjct: 121 RYIQSGVVSAYSRIFPPL 138

The following BLAST results are available for this feature:

BLAST of CmoCh10G012030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54X41	2.6e-15	37.96	SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279...	[more]
A6QLK2	1.2e-12	39.81	SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1	[more]
Q9BQ15	1.2e-12	39.81	SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1	[more]
Q8R2Y9	1.2e-12	39.81	SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1	[more]
Q3SWT1	1.2e-12	39.81	SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1	[more]

BLAST of CmoCh10G012030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAL0	1.1e-72	100.00	SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=...	[more]
A0A6J1HZ66	1.7e-70	96.40	SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 ...	[more]
A0A1S3BPN4	6.1e-68	93.53	SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1	[more]
A0A5D3CIR3	6.1e-68	93.53	SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LW03	6.1e-68	93.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1	[more]

BLAST of CmoCh10G012030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63690.1	1.8e-48	61.59	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 2..110 e-value: 2.5E-24 score: 87.6
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 1..138
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 1..138
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G012030.1	CmoCh10G012030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding