Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACGATCAAGACATTATTAGCAACAAAATTCTCGAACTCATACCTGATGTCATCGAGCTAATACTTAGCAAGCTCCCCTACTATTATTTGCCGAGCTGCAGGTTGGTTTGCAAAACATGGAACAATGTGATTTTAAGTTCTAAACATGATCCTTCAATCTCGGCTGCTTCCAACTTCTTGTTTGCCCATGTTTATTCCAACAACGGTGATCGTCCATCGTTTCGTAATCTTCATTGCTTGGAATTGGATCCCGACCATGTGGAAGGGGTGAGGAGTGTGGCTTCATTCAACTTGCGTCGTAAATATTTTCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGGCTCTTAGCTTTTGTGGTCACCAAAAACACAAAGAGGTGGCTTAGCTCGAATACAGTGGTCATATTAAATCCCATGACGAATGAGTACTTTGAAGTTCCTAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACGAAGCACTACAAAGTAATAAGAAACTCCACCGTCGATGATAGAAACTCCATCGTCCATAATTACAAATCAGAGATTTTTGCTTTCGGGACCCGGCAGGAATGGACCCGTATTGAGTCACCGTCCTGTTCTTTTCATGGATGTCATGGTGTTTACTTGAATGGAGGGCTGCATTGGGTTGGACAAAATGATCTTCGTCGTGATGTCATTTATCGTCTAAACATGGAAGATGAGAAGTACGAGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTATATTAGAGTATTTAATGGCGCCCTCCATCTGACTCTTTCCATGGAGGAGTACGAATACAGAATATGGAAGATGAAAGAAGATGGTTCGTGGATTAAATCATTTAGTGTTATCATACCAACAAAAAATGTTCTTTCTTTCTCAAAATCAACCGTGGAACAGATTAAAACAGGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGCTCAATTAGTGTTGTATGATCCCAAAACCGAGAAGATGGAAAAGTTGATGGATGATACAATTGTGAGGAATTTTTCGGTTCACAACATTGACTGCTTCAATTTTAATGCTTTTTCAGATATTTTGACTGTAAATTTTGAGTCTAATTGA
mRNA sequence
ATGGCGAACGATCAAGACATTATTAGCAACAAAATTCTCGAACTCATACCTGATGTCATCGAGCTAATACTTAGCAAGCTCCCCTACTATTATTTGCCGAGCTGCAGGTTGGTTTGCAAAACATGGAACAATGTGATTTTAAGTTCTAAACATGATCCTTCAATCTCGGCTGCTTCCAACTTCTTGTTTGCCCATGTTTATTCCAACAACGGTGATCGTCCATCGTTTCGTAATCTTCATTGCTTGGAATTGGATCCCGACCATGTGGAAGGGGTGAGGAGTGTGGCTTCATTCAACTTGCGTCGTAAATATTTTCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGGCTCTTAGCTTTTGTGGTCACCAAAAACACAAAGAGGTGGCTTAGCTCGAATACAGTGGTCATATTAAATCCCATGACGAATGAGTACTTTGAAGTTCCTAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACGAAGCACTACAAAGTAATAAGAAACTCCACCGTCGATGATAGAAACTCCATCGTCCATAATTACAAATCAGAGATTTTTGCTTTCGGGACCCGGCAGGAATGGACCCGTATTGAGTCACCGTCCTGTTCTTTTCATGGATGTCATGGTGTTTACTTGAATGGAGGGCTGCATTGGGTTGGACAAAATGATCTTCGTCGTGATGTCATTTATCGTCTAAACATGGAAGATGAGAAGTACGAGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTATATTAGAGTATTTAATGGCGCCCTCCATCTGACTCTTTCCATGGAGGAGTACGAATACAGAATATGGAAGATGAAAGAAGATGGTTCGTGGATTAAATCATTTAGTGTTATCATACCAACAAAAAATGTTCTTTCTTTCTCAAAATCAACCGTGGAACAGATTAAAACAGGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGCTCAATTAGTGTTGTATGATCCCAAAACCGAGAAGATGGAAAAGTTGATGGATGATACAATTGTGAGGAATTTTTCGGTTCACAACATTGACTGCTTCAATTTTAATGCTTTTTCAGATATTTTGACTGTAAATTTTGAGTCTAATTGA
Coding sequence (CDS)
ATGGCGAACGATCAAGACATTATTAGCAACAAAATTCTCGAACTCATACCTGATGTCATCGAGCTAATACTTAGCAAGCTCCCCTACTATTATTTGCCGAGCTGCAGGTTGGTTTGCAAAACATGGAACAATGTGATTTTAAGTTCTAAACATGATCCTTCAATCTCGGCTGCTTCCAACTTCTTGTTTGCCCATGTTTATTCCAACAACGGTGATCGTCCATCGTTTCGTAATCTTCATTGCTTGGAATTGGATCCCGACCATGTGGAAGGGGTGAGGAGTGTGGCTTCATTCAACTTGCGTCGTAAATATTTTCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGGCTCTTAGCTTTTGTGGTCACCAAAAACACAAAGAGGTGGCTTAGCTCGAATACAGTGGTCATATTAAATCCCATGACGAATGAGTACTTTGAAGTTCCTAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACGAAGCACTACAAAGTAATAAGAAACTCCACCGTCGATGATAGAAACTCCATCGTCCATAATTACAAATCAGAGATTTTTGCTTTCGGGACCCGGCAGGAATGGACCCGTATTGAGTCACCGTCCTGTTCTTTTCATGGATGTCATGGTGTTTACTTGAATGGAGGGCTGCATTGGGTTGGACAAAATGATCTTCGTCGTGATGTCATTTATCGTCTAAACATGGAAGATGAGAAGTACGAGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTATATTAGAGTATTTAATGGCGCCCTCCATCTGACTCTTTCCATGGAGGAGTACGAATACAGAATATGGAAGATGAAAGAAGATGGTTCGTGGATTAAATCATTTAGTGTTATCATACCAACAAAAAATGTTCTTTCTTTCTCAAAATCAACCGTGGAACAGATTAAAACAGGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGCTCAATTAGTGTTGTATGATCCCAAAACCGAGAAGATGGAAAAGTTGATGGATGATACAATTGTGAGGAATTTTTCGGTTCACAACATTGACTGCTTCAATTTTAATGCTTTTTCAGATATTTTGACTGTAAATTTTGAGTCTAATTGA
Protein sequence
MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRNSTVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFSVIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSVHNIDCFNFNAFSDILTVNFESN
Homology
BLAST of CmoCh10G011900 vs. ExPASy Swiss-Prot
Match:
Q9SFC7 (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 7.8e-14
Identity = 105/384 (27.34%), Postives = 159/384 (41.41%), Query Frame = 0
Query: 13 LELIP-DVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN----FLFAHVY 72
LE +P D+I I S+LP + VC++W +V+ ++H S++S+ L H
Sbjct: 25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVL--TQHGRLSSSSSSPTKPCLLLHC- 84
Query: 73 SNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKN 132
D P LH L+L + E F LR F + SCNGLL +
Sbjct: 85 ----DSPIRNGLHFLDLSEE--EKRIKTKKFTLRFASSMPEF-DVVGSCNGLLCLSDS-- 144
Query: 133 TKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIR----NSTV 192
L ++++ + NP T E+P+ K + +GFGF TK YKV++ +
Sbjct: 145 ----LYNDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSS 204
Query: 193 DDRNSIVH-----NYKSEIFAFGTRQEWTRIESPSCSFHG---------CHGVYLNGGLH 252
+ N I YK T T +S S G +NG LH
Sbjct: 205 SNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLH 264
Query: 253 WVGQNDLRRDVIYR----LNMEDEKYEQIPFPNDDGY-FPYIRVFN--GALHLTLSMEEY 312
+V + RR V R ++EDE++++IP P+ G R+ N G L +
Sbjct: 265 FVTRP--RRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYG 324
Query: 313 EYRIWKMKEDG---SWIKSFSV--IIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQ 351
+ IW MK G SW K +S+ +P K L + + GK ++LCL +
Sbjct: 325 KLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGE 384
BLAST of CmoCh10G011900 vs. ExPASy Swiss-Prot
Match:
Q8S8Q9 (F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 2.4e-07
Identity = 78/376 (20.74%), Postives = 144/376 (38.30%), Query Frame = 0
Query: 13 LELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGD 72
++++P+++E +L +LP + CR+V K W +++ SS+ + N + + N D
Sbjct: 11 IDILPELLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHMSLQNSRRRILAAYNCD 70
Query: 73 RPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWL 132
R L L EG + Y +C G++ F
Sbjct: 71 CGGRRKL----LPESRFEGDEEIV-------YLHCDASRPSMTCQGVICFP--------- 130
Query: 133 SSNTVVILNPMTNEYFEVP--------------KDEFKGNWLTCSYGFGFCPKTKHYKVI 192
+ +++LNP T++ P K GNW+ GFG YKV+
Sbjct: 131 EQDWIIVLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWV---MGFGRDKVNGRYKVV 190
Query: 193 RNS----TVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFH-GCHGVYLNGGLHWVGQ 252
R S V +V ++ EW ++ P + G V +NG ++W+
Sbjct: 191 RMSFAFWRVRQEEPVVECGVLDV----DTGEWRKLSPPPYVVNVGSKSVCVNGSIYWLHI 250
Query: 253 NDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRV---FNGALHLTLSMEEYEYRIWKMK 312
+ R I L++ E++ ++P P V L +T E+ +W M
Sbjct: 251 QTVYR--ILALDLHKEEFHKVPVPPTQITVDTQMVNLEDRLVLAITRVSPEWILEVWGMD 310
Query: 313 E-DGSWIKSFSVIIPTKNVLSF--SKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKME 364
W K++S+ + + V+S+ K + K ++ +L Y P +++
Sbjct: 311 TYKEKWSKTYSISLDHR-VVSWRRQKRWFTPVAVSKQANLVFYDNKKRLFKYYPVKDEIR 356
BLAST of CmoCh10G011900 vs. ExPASy Swiss-Prot
Match:
Q9LUP7 (Putative F-box protein At3g17500 OS=Arabidopsis thaliana OX=3702 GN=At3g17500 PE=4 SV=1)
HSP 1 Score: 50.4 bits (119), Expect = 5.1e-05
Identity = 64/253 (25.30%), Postives = 110/253 (43.48%), Query Frame = 0
Query: 18 DVIELILSKLPYYYLPSCRLVCKTWNNVI----LSSKHDPSISAASNFLFAHVYSNNGDR 77
D++E ILS++P L R CK+WNN + KH S+ AA FL +
Sbjct: 8 DLVEEILSRVPATSLKRLRSTCKSWNNCYKDQRFTEKH--SVIAAKQFLVLMLKD----- 67
Query: 78 PSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLS 137
+ + ++ + + + S L+ + IS I C+GLL TK+ +
Sbjct: 68 ---CRVSSVSVNLNEIHNNIAAPSIELKGVVGPQMQISGIFHCDGLL-LCTTKDDR---- 127
Query: 138 SNTVVILNPMTNEYFEVPKD-EFKGNWLTCSYGFGFC-PKTKH-YKVIRNSTVDDRNSIV 197
+ + NP T + V +K N + G+ ++H YK++R N +
Sbjct: 128 ---LEVWNPCTGQTRRVQHSIHYKTN---SEFVLGYVNNNSRHSYKILRY-----WNFYM 187
Query: 198 HNYK---SEIFAFGTRQEWTRIE--SPSCSFHGCHGVYLNGGLHWVGQNDLRR-DVIYRL 257
NY+ EI+ F + W I+ +P C G V L G +W+ ++ R D+I R
Sbjct: 188 SNYRVSEFEIYDFSS-DSWRFIDEVNPYCLTEG--EVSLKGNTYWLASDEKRDIDLILRF 231
BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match:
A0A6J1HBS1 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 SV=1)
HSP 1 Score: 801.6 bits (2069), Expect = 1.4e-228
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query: 1 MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN
Sbjct: 1 MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
Query: 61 FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL
Sbjct: 61 FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN
Sbjct: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
Query: 181 STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV 240
STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV
Sbjct: 181 STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV 240
Query: 241 IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS 300
IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS
Sbjct: 241 IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS 300
Query: 301 VIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSV 360
VIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSV
Sbjct: 301 VIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSV 360
Query: 361 HNIDCFNFNAFSDILTVNFESN 383
HNIDCFNFNAFSDILTVNFESN
Sbjct: 361 HNIDCFNFNAFSDILTVNFESN 382
BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match:
A0A6J1HAB5 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462002 PE=4 SV=1)
HSP 1 Score: 689.5 bits (1778), Expect = 8.0e-195
Identity = 330/386 (85.49%), Postives = 352/386 (91.19%), Query Frame = 0
Query: 1 MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
MANDQDIISNK ELIPDVI+LI SKLPYYYLPSCRLVCKTWN+VILSSKHDPSIS ASN
Sbjct: 1 MANDQDIISNKTPELIPDVIDLIFSKLPYYYLPSCRLVCKTWNDVILSSKHDPSISPASN 60
Query: 61 FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
FL AHVYSN DR SFRNLHCLELD DHVEGVRS+ASFNLRRKYFRRSFISTINSCNGLL
Sbjct: 61 FLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRSFISTINSCNGLL 120
Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
AFVVTK TK WL+SN VVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFCPKTKHYKV+RN
Sbjct: 121 AFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRN 180
Query: 181 STVDDRNSIV--------HNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVG 240
STV+DRNS V +NYKSEIFAFGTRQEWTRIESPSCSF+GCHGVYLNGGLHWVG
Sbjct: 181 STVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCHGVYLNGGLHWVG 240
Query: 241 QNDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKED 300
Q+DL +DVIYRLNMEDEKYE IPFPNDDGYFP I VFNGALHLT+SME +EY +WKMKED
Sbjct: 241 QDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSMEGHEYTMWKMKED 300
Query: 301 GSWIKSFSVIIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLM 360
GSWIK+FS I+P +KN+LSFSKSTVEQIK KDGKILC+WAGA+LVLYDP+TEKMEKLM
Sbjct: 301 GSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVLYDPQTEKMEKLM 360
Query: 361 DDTIVRNFSVHNIDCFNFNAFSDILT 377
DDTI R+FSVHNIDCFNFNA SDILT
Sbjct: 361 DDTIARDFSVHNIDCFNFNALSDILT 386
BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match:
A0A6J1HA63 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462009 PE=4 SV=1)
HSP 1 Score: 686.8 bits (1771), Expect = 5.2e-194
Identity = 325/384 (84.64%), Postives = 351/384 (91.41%), Query Frame = 0
Query: 1 MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
MANDQDIISNKI ELIPDV+ELILSKLPYYYLPSCRLVCKTWN+VILSSKHDPSIS ASN
Sbjct: 1 MANDQDIISNKISELIPDVVELILSKLPYYYLPSCRLVCKTWNDVILSSKHDPSISTASN 60
Query: 61 FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
FL AHVY N DR SFRNLHCLELD DHVEGVRSVASFNL RKYFRRSFISTINSCNGLL
Sbjct: 61 FLLAHVYFNRCDRLSFRNLHCLELDSDHVEGVRSVASFNLCRKYFRRSFISTINSCNGLL 120
Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
AFVVTKNTK WL+SNTVVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFCPKTKHYKV+RN
Sbjct: 121 AFVVTKNTKSWLNSNTVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRN 180
Query: 181 STVDDRNSIVH------NYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQN 240
ST++DRNS + NYKSEIF+FGTRQEWTRIESPSCSF+GCHGVYLNGGLHW+GQ+
Sbjct: 181 STIEDRNSTIEDRYSTVNYKSEIFSFGTRQEWTRIESPSCSFNGCHGVYLNGGLHWIGQD 240
Query: 241 DLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGS 300
DL +DVIYRLNMEDEKY+ IPFPNDDGYFP I VFNGALHLTLSME +EY +WKMKEDGS
Sbjct: 241 DLYQDVIYRLNMEDEKYKHIPFPNDDGYFPCIGVFNGALHLTLSMEGHEYTMWKMKEDGS 300
Query: 301 WIKSFSVIIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDD 360
W K+FSVI+P +KN+ SFSKSTVEQ+K KDGKI C+WAG +LVLYDPKTEKM+KLMDD
Sbjct: 301 WSKAFSVIVPDVSKNIFSFSKSTVEQVKICKDGKIFCVWAGVELVLYDPKTEKMKKLMDD 360
Query: 361 TIVRNFSVHNIDCFNFNAFSDILT 377
TIVR+FS+HNIDCFNFNA SDILT
Sbjct: 361 TIVRDFSIHNIDCFNFNALSDILT 384
BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match:
A0A6J1HBS8 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 SV=1)
HSP 1 Score: 682.9 bits (1761), Expect = 7.4e-193
Identity = 326/378 (86.24%), Postives = 349/378 (92.33%), Query Frame = 0
Query: 1 MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
MANDQDIISNKI +LIPDV+ELIL+ LPYYYLPSCRLVC+TWN+VILSSK+DPSISAASN
Sbjct: 1 MANDQDIISNKIPKLIPDVVELILNILPYYYLPSCRLVCRTWNDVILSSKYDPSISAASN 60
Query: 61 FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
FL AHVYSN DR SFRNLHCLELD DHVEGV+SVASFNLRRKYFRRSFISTINSCNGLL
Sbjct: 61 FLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVKSVASFNLRRKYFRRSFISTINSCNGLL 120
Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
AFVVTKNTK WL+SNTVVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFCPKTKHYKV+RN
Sbjct: 121 AFVVTKNTKSWLNSNTVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRN 180
Query: 181 STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV 240
STV+DRNS V NYKSEIFAFGTRQEWTRIESPS SF+GCHGVYLNGGLHWVGQ+DL DV
Sbjct: 181 STVEDRNSTV-NYKSEIFAFGTRQEWTRIESPSYSFNGCHGVYLNGGLHWVGQDDLHHDV 240
Query: 241 IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS 300
IYRLNMEDEKYE IPFPNDDGYFP I VFNGALHLTLSME +EY +WKMKEDGSWIK+FS
Sbjct: 241 IYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTLSMEGHEYTMWKMKEDGSWIKAFS 300
Query: 301 VIIPT--KNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNF 360
+P KN+LSFS+ST+EQ+K KDGKILC+WAGA+LVLYDPKTEKMEKLMDDTI R F
Sbjct: 301 TSVPDVGKNILSFSQSTLEQVKICKDGKILCVWAGAELVLYDPKTEKMEKLMDDTIAREF 360
Query: 361 SVHNIDCFNFNAFSDILT 377
SVHNIDCFNFNA DILT
Sbjct: 361 SVHNIDCFNFNALPDILT 377
BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match:
A0A6J1HYC7 (F-box protein At3g07870-like OS=Cucurbita maxima OX=3661 GN=LOC111467985 PE=4 SV=1)
HSP 1 Score: 680.2 bits (1754), Expect = 4.8e-192
Identity = 325/380 (85.53%), Postives = 345/380 (90.79%), Query Frame = 0
Query: 1 MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
MANDQDIISNKI ELI DV+ELILSKLPYYYLPSCRLVCKTWNNVILSSK+D SISA SN
Sbjct: 1 MANDQDIISNKIPELIHDVVELILSKLPYYYLPSCRLVCKTWNNVILSSKYDLSISADSN 60
Query: 61 FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
FL AHVYSN D PSFR+LHCLELDPDHV+GVRSVAS NL RKYF+ SFISTINSCNGLL
Sbjct: 61 FLLAHVYSNRRDCPSFRDLHCLELDPDHVKGVRSVASLNLHRKYFQHSFISTINSCNGLL 120
Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
AFVVTKNTKRWL+ NTVVI NPMTNEY E+PKDEFK L CSYGFGFCP+TK YKV+RN
Sbjct: 121 AFVVTKNTKRWLTPNTVVIFNPMTNEYLELPKDEFKRKRLNCSYGFGFCPRTKQYKVVRN 180
Query: 181 STVDDRNSIVH-NYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRD 240
STVDDRNS VH NYKSEIFAFGTRQEWTRIESPSCSFHGCHG YLNGGLHW+GQNDL +
Sbjct: 181 STVDDRNSTVHSNYKSEIFAFGTRQEWTRIESPSCSFHGCHGAYLNGGLHWIGQNDLGYN 240
Query: 241 VIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSF 300
VIYRLNMEDEKY+QIPFPN DGYFPYI VFNGALHLT+SMEEYEYRIWKM+ DGSWIKSF
Sbjct: 241 VIYRLNMEDEKYKQIPFPNHDGYFPYIGVFNGALHLTISMEEYEYRIWKMEGDGSWIKSF 300
Query: 301 SVIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFS 360
SVI+PTKN++SFSKSTVEQIKT KDGKILC+WAGAQ VLYDPKTE MEKLM+DTIVR FS
Sbjct: 301 SVIVPTKNIISFSKSTVEQIKTCKDGKILCVWAGAQFVLYDPKTETMEKLMEDTIVRYFS 360
Query: 361 VHNIDCFNFNAFSDILTVNF 380
VHNIDCFNF+A DILT F
Sbjct: 361 VHNIDCFNFSALRDILTGKF 380
BLAST of CmoCh10G011900 vs. TAIR 10
Match:
AT3G07870.1 (F-box and associated interaction domains-containing protein )
HSP 1 Score: 79.7 bits (195), Expect = 5.5e-15
Identity = 105/384 (27.34%), Postives = 159/384 (41.41%), Query Frame = 0
Query: 13 LELIP-DVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN----FLFAHVY 72
LE +P D+I I S+LP + VC++W +V+ ++H S++S+ L H
Sbjct: 25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVL--TQHGRLSSSSSSPTKPCLLLHC- 84
Query: 73 SNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKN 132
D P LH L+L + E F LR F + SCNGLL +
Sbjct: 85 ----DSPIRNGLHFLDLSEE--EKRIKTKKFTLRFASSMPEF-DVVGSCNGLLCLSDS-- 144
Query: 133 TKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIR----NSTV 192
L ++++ + NP T E+P+ K + +GFGF TK YKV++ +
Sbjct: 145 ----LYNDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSS 204
Query: 193 DDRNSIVH-----NYKSEIFAFGTRQEWTRIESPSCSFHG---------CHGVYLNGGLH 252
+ N I YK T T +S S G +NG LH
Sbjct: 205 SNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLH 264
Query: 253 WVGQNDLRRDVIYR----LNMEDEKYEQIPFPNDDGY-FPYIRVFN--GALHLTLSMEEY 312
+V + RR V R ++EDE++++IP P+ G R+ N G L +
Sbjct: 265 FVTRP--RRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYG 324
Query: 313 EYRIWKMKEDG---SWIKSFSV--IIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQ 351
+ IW MK G SW K +S+ +P K L + + GK ++LCL +
Sbjct: 325 KLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGE 384
BLAST of CmoCh10G011900 vs. TAIR 10
Match:
AT2G43260.1 (F-box and associated interaction domains-containing protein )
HSP 1 Score: 58.2 bits (139), Expect = 1.7e-08
Identity = 78/376 (20.74%), Postives = 144/376 (38.30%), Query Frame = 0
Query: 13 LELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGD 72
++++P+++E +L +LP + CR+V K W +++ SS+ + N + + N D
Sbjct: 11 IDILPELLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHMSLQNSRRRILAAYNCD 70
Query: 73 RPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWL 132
R L L EG + Y +C G++ F
Sbjct: 71 CGGRRKL----LPESRFEGDEEIV-------YLHCDASRPSMTCQGVICFP--------- 130
Query: 133 SSNTVVILNPMTNEYFEVP--------------KDEFKGNWLTCSYGFGFCPKTKHYKVI 192
+ +++LNP T++ P K GNW+ GFG YKV+
Sbjct: 131 EQDWIIVLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWV---MGFGRDKVNGRYKVV 190
Query: 193 RNS----TVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFH-GCHGVYLNGGLHWVGQ 252
R S V +V ++ EW ++ P + G V +NG ++W+
Sbjct: 191 RMSFAFWRVRQEEPVVECGVLDV----DTGEWRKLSPPPYVVNVGSKSVCVNGSIYWLHI 250
Query: 253 NDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRV---FNGALHLTLSMEEYEYRIWKMK 312
+ R I L++ E++ ++P P V L +T E+ +W M
Sbjct: 251 QTVYR--ILALDLHKEEFHKVPVPPTQITVDTQMVNLEDRLVLAITRVSPEWILEVWGMD 310
Query: 313 E-DGSWIKSFSVIIPTKNVLSF--SKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKME 364
W K++S+ + + V+S+ K + K ++ +L Y P +++
Sbjct: 311 TYKEKWSKTYSISLDHR-VVSWRRQKRWFTPVAVSKQANLVFYDNKKRLFKYYPVKDEIR 356
BLAST of CmoCh10G011900 vs. TAIR 10
Match:
AT5G41490.1 (F-box associated ubiquitination effector family protein )
HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 67/309 (21.68%), Postives = 118/309 (38.19%), Query Frame = 0
Query: 8 ISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSS-----KHDPSISAASNFL 67
++ I L D+IE I+S++P + + RL CK+WNN+ S + D + + +
Sbjct: 1 MATMITNLRRDLIEEIISRVPLRSMKAVRLTCKSWNNISKSEIFTKMQIDKATTREGKTM 60
Query: 68 FAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYF-RRSFISTINSCNGLLA 127
V +N L L V+ V F + + + I + C GLL
Sbjct: 61 MISVMPHN-----------LSLMSVAVDDVDPSVEFKGQLSFLCNQVSIHKVIHCEGLLL 120
Query: 128 FVVTKNTKRWLSSNTVVILNPMTNE------YFEVPKDEFKGNWLTCSYGF---GFCPKT 187
+ +T+ VV+ NP + + + P K +W + G+ G C
Sbjct: 121 CFLKDHTR-------VVVWNPYSGQTRWVKLRYPHPPSPSKWDWFRYALGYEDKGSCRSV 180
Query: 188 KHYKVIRNSTVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSF--HGCHGVYLNGGLHW 247
K + + + N N EI+ F + WT ++ S S+ + GV+L G +W
Sbjct: 181 KFLRFLDYLPEEPEN---QNVCYEIYDFDS-DLWTTLDVTSHSWICYSSCGVFLKGNAYW 240
Query: 248 ---VGQNDLRRDVIYRLNMEDEKYE---QIPFPNDDGYFPYIRVF------NGALHLTLS 288
++ D I + E + +PF D + Y+ + A
Sbjct: 241 PVVKSSSEANIDHIIYFDFTRESFGPPLPLPFGATDRGYSYVNLSCVKEEKLAAFFQHYI 287
BLAST of CmoCh10G011900 vs. TAIR 10
Match:
AT3G17500.1 (F-box family protein )
HSP 1 Score: 50.4 bits (119), Expect = 3.6e-06
Identity = 64/253 (25.30%), Postives = 110/253 (43.48%), Query Frame = 0
Query: 18 DVIELILSKLPYYYLPSCRLVCKTWNNVI----LSSKHDPSISAASNFLFAHVYSNNGDR 77
D++E ILS++P L R CK+WNN + KH S+ AA FL +
Sbjct: 7 DLVEEILSRVPATSLKRLRSTCKSWNNCYKDQRFTEKH--SVIAAKQFLVLMLKD----- 66
Query: 78 PSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLS 137
+ + ++ + + + S L+ + IS I C+GLL TK+ +
Sbjct: 67 ---CRVSSVSVNLNEIHNNIAAPSIELKGVVGPQMQISGIFHCDGLL-LCTTKDDR---- 126
Query: 138 SNTVVILNPMTNEYFEVPKD-EFKGNWLTCSYGFGFC-PKTKH-YKVIRNSTVDDRNSIV 197
+ + NP T + V +K N + G+ ++H YK++R N +
Sbjct: 127 ---LEVWNPCTGQTRRVQHSIHYKTN---SEFVLGYVNNNSRHSYKILRY-----WNFYM 186
Query: 198 HNYK---SEIFAFGTRQEWTRIE--SPSCSFHGCHGVYLNGGLHWVGQNDLRR-DVIYRL 257
NY+ EI+ F + W I+ +P C G V L G +W+ ++ R D+I R
Sbjct: 187 SNYRVSEFEIYDFSS-DSWRFIDEVNPYCLTEG--EVSLKGNTYWLASDEKRDIDLILRF 230
BLAST of CmoCh10G011900 vs. TAIR 10
Match:
AT3G17320.1 (F-box and associated interaction domains-containing protein )
HSP 1 Score: 44.3 bits (103), Expect = 2.6e-04
Identity = 55/248 (22.18%), Postives = 95/248 (38.31%), Query Frame = 0
Query: 11 KILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNN 70
KI +L D+ E +LS++P YL + R CK WN + + A V +
Sbjct: 3 KISDLPRDLAEEVLSRVPVTYLRAIRFTCKKWNTLTKRRSFTKKLIGQEK-AEAKVKEFH 62
Query: 71 GDRPSFRNLHCLELDPDHVEGVRSV-ASFNLRRKYFR-------RSFISTINSCNGLLAF 130
LH + ++ D + +V +S + K R IS + C+GLL
Sbjct: 63 AIMTLNSRLHLMSVNLDGIHKDENVESSIKQKGKLISLTVADPDRIVISQVYHCDGLLLC 122
Query: 131 VVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKH-YKVIR-- 190
+ + R +V+ NP + + + W + G+ K YK++R
Sbjct: 123 ITNEINSR------LVVWNPYSGQTRWIEPRTSYREWDIYALGYESKNNAKRSYKILRYL 182
Query: 191 -------NSTVDDRNSIVHNYKSEIFAFGTRQEWTRIESPS----CSFHGCHGVYLNGGL 237
+ +V+ R + + EI++ T W IE + C H GV L G
Sbjct: 183 DAYEDMGDMSVEPRTRVC---EFEIYSLDT-NSWKVIEVTTDWDLCFLH--RGVTLKGNT 237
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SFC7 | 7.8e-14 | 27.34 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | [more] |
Q8S8Q9 | 2.4e-07 | 20.74 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 ... | [more] |
Q9LUP7 | 5.1e-05 | 25.30 | Putative F-box protein At3g17500 OS=Arabidopsis thaliana OX=3702 GN=At3g17500 PE... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1HBS1 | 1.4e-228 | 100.00 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 ... | [more] |
A0A6J1HAB5 | 8.0e-195 | 85.49 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462002 PE=4 ... | [more] |
A0A6J1HA63 | 5.2e-194 | 84.64 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462009 PE=4 ... | [more] |
A0A6J1HBS8 | 7.4e-193 | 86.24 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 ... | [more] |
A0A6J1HYC7 | 4.8e-192 | 85.53 | F-box protein At3g07870-like OS=Cucurbita maxima OX=3661 GN=LOC111467985 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
AT3G07870.1 | 5.5e-15 | 27.34 | F-box and associated interaction domains-containing protein | [more] |
AT2G43260.1 | 1.7e-08 | 20.74 | F-box and associated interaction domains-containing protein | [more] |
AT5G41490.1 | 2.1e-06 | 21.68 | F-box associated ubiquitination effector family protein | [more] |
AT3G17500.1 | 3.6e-06 | 25.30 | F-box family protein | [more] |
AT3G17320.1 | 2.6e-04 | 22.18 | F-box and associated interaction domains-containing protein | [more] |