CmoCh10G011900 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G011900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionF-box protein At3g07870-like
LocationCmo_Chr10: 10828341 .. 10829489 (-)
RNA-Seq ExpressionCmoCh10G011900
SyntenyCmoCh10G011900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACGATCAAGACATTATTAGCAACAAAATTCTCGAACTCATACCTGATGTCATCGAGCTAATACTTAGCAAGCTCCCCTACTATTATTTGCCGAGCTGCAGGTTGGTTTGCAAAACATGGAACAATGTGATTTTAAGTTCTAAACATGATCCTTCAATCTCGGCTGCTTCCAACTTCTTGTTTGCCCATGTTTATTCCAACAACGGTGATCGTCCATCGTTTCGTAATCTTCATTGCTTGGAATTGGATCCCGACCATGTGGAAGGGGTGAGGAGTGTGGCTTCATTCAACTTGCGTCGTAAATATTTTCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGGCTCTTAGCTTTTGTGGTCACCAAAAACACAAAGAGGTGGCTTAGCTCGAATACAGTGGTCATATTAAATCCCATGACGAATGAGTACTTTGAAGTTCCTAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACGAAGCACTACAAAGTAATAAGAAACTCCACCGTCGATGATAGAAACTCCATCGTCCATAATTACAAATCAGAGATTTTTGCTTTCGGGACCCGGCAGGAATGGACCCGTATTGAGTCACCGTCCTGTTCTTTTCATGGATGTCATGGTGTTTACTTGAATGGAGGGCTGCATTGGGTTGGACAAAATGATCTTCGTCGTGATGTCATTTATCGTCTAAACATGGAAGATGAGAAGTACGAGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTATATTAGAGTATTTAATGGCGCCCTCCATCTGACTCTTTCCATGGAGGAGTACGAATACAGAATATGGAAGATGAAAGAAGATGGTTCGTGGATTAAATCATTTAGTGTTATCATACCAACAAAAAATGTTCTTTCTTTCTCAAAATCAACCGTGGAACAGATTAAAACAGGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGCTCAATTAGTGTTGTATGATCCCAAAACCGAGAAGATGGAAAAGTTGATGGATGATACAATTGTGAGGAATTTTTCGGTTCACAACATTGACTGCTTCAATTTTAATGCTTTTTCAGATATTTTGACTGTAAATTTTGAGTCTAATTGA

mRNA sequence

ATGGCGAACGATCAAGACATTATTAGCAACAAAATTCTCGAACTCATACCTGATGTCATCGAGCTAATACTTAGCAAGCTCCCCTACTATTATTTGCCGAGCTGCAGGTTGGTTTGCAAAACATGGAACAATGTGATTTTAAGTTCTAAACATGATCCTTCAATCTCGGCTGCTTCCAACTTCTTGTTTGCCCATGTTTATTCCAACAACGGTGATCGTCCATCGTTTCGTAATCTTCATTGCTTGGAATTGGATCCCGACCATGTGGAAGGGGTGAGGAGTGTGGCTTCATTCAACTTGCGTCGTAAATATTTTCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGGCTCTTAGCTTTTGTGGTCACCAAAAACACAAAGAGGTGGCTTAGCTCGAATACAGTGGTCATATTAAATCCCATGACGAATGAGTACTTTGAAGTTCCTAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACGAAGCACTACAAAGTAATAAGAAACTCCACCGTCGATGATAGAAACTCCATCGTCCATAATTACAAATCAGAGATTTTTGCTTTCGGGACCCGGCAGGAATGGACCCGTATTGAGTCACCGTCCTGTTCTTTTCATGGATGTCATGGTGTTTACTTGAATGGAGGGCTGCATTGGGTTGGACAAAATGATCTTCGTCGTGATGTCATTTATCGTCTAAACATGGAAGATGAGAAGTACGAGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTATATTAGAGTATTTAATGGCGCCCTCCATCTGACTCTTTCCATGGAGGAGTACGAATACAGAATATGGAAGATGAAAGAAGATGGTTCGTGGATTAAATCATTTAGTGTTATCATACCAACAAAAAATGTTCTTTCTTTCTCAAAATCAACCGTGGAACAGATTAAAACAGGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGCTCAATTAGTGTTGTATGATCCCAAAACCGAGAAGATGGAAAAGTTGATGGATGATACAATTGTGAGGAATTTTTCGGTTCACAACATTGACTGCTTCAATTTTAATGCTTTTTCAGATATTTTGACTGTAAATTTTGAGTCTAATTGA

Coding sequence (CDS)

ATGGCGAACGATCAAGACATTATTAGCAACAAAATTCTCGAACTCATACCTGATGTCATCGAGCTAATACTTAGCAAGCTCCCCTACTATTATTTGCCGAGCTGCAGGTTGGTTTGCAAAACATGGAACAATGTGATTTTAAGTTCTAAACATGATCCTTCAATCTCGGCTGCTTCCAACTTCTTGTTTGCCCATGTTTATTCCAACAACGGTGATCGTCCATCGTTTCGTAATCTTCATTGCTTGGAATTGGATCCCGACCATGTGGAAGGGGTGAGGAGTGTGGCTTCATTCAACTTGCGTCGTAAATATTTTCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGGCTCTTAGCTTTTGTGGTCACCAAAAACACAAAGAGGTGGCTTAGCTCGAATACAGTGGTCATATTAAATCCCATGACGAATGAGTACTTTGAAGTTCCTAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACGAAGCACTACAAAGTAATAAGAAACTCCACCGTCGATGATAGAAACTCCATCGTCCATAATTACAAATCAGAGATTTTTGCTTTCGGGACCCGGCAGGAATGGACCCGTATTGAGTCACCGTCCTGTTCTTTTCATGGATGTCATGGTGTTTACTTGAATGGAGGGCTGCATTGGGTTGGACAAAATGATCTTCGTCGTGATGTCATTTATCGTCTAAACATGGAAGATGAGAAGTACGAGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTATATTAGAGTATTTAATGGCGCCCTCCATCTGACTCTTTCCATGGAGGAGTACGAATACAGAATATGGAAGATGAAAGAAGATGGTTCGTGGATTAAATCATTTAGTGTTATCATACCAACAAAAAATGTTCTTTCTTTCTCAAAATCAACCGTGGAACAGATTAAAACAGGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGCTCAATTAGTGTTGTATGATCCCAAAACCGAGAAGATGGAAAAGTTGATGGATGATACAATTGTGAGGAATTTTTCGGTTCACAACATTGACTGCTTCAATTTTAATGCTTTTTCAGATATTTTGACTGTAAATTTTGAGTCTAATTGA

Protein sequence

MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRNSTVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFSVIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSVHNIDCFNFNAFSDILTVNFESN
Homology
BLAST of CmoCh10G011900 vs. ExPASy Swiss-Prot
Match: Q9SFC7 (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.8e-14
Identity = 105/384 (27.34%), Postives = 159/384 (41.41%), Query Frame = 0

Query: 13  LELIP-DVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN----FLFAHVY 72
           LE +P D+I  I S+LP   +     VC++W +V+  ++H    S++S+     L  H  
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVL--TQHGRLSSSSSSPTKPCLLLHC- 84

Query: 73  SNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKN 132
               D P    LH L+L  +  E       F LR       F   + SCNGLL    +  
Sbjct: 85  ----DSPIRNGLHFLDLSEE--EKRIKTKKFTLRFASSMPEF-DVVGSCNGLLCLSDS-- 144

Query: 133 TKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIR----NSTV 192
               L ++++ + NP T    E+P+   K +     +GFGF   TK YKV++      + 
Sbjct: 145 ----LYNDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSS 204

Query: 193 DDRNSIVH-----NYKSEIFAFGTRQEWTRIESPSCSFHG---------CHGVYLNGGLH 252
            + N I        YK       T    T  +S S    G              +NG LH
Sbjct: 205 SNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLH 264

Query: 253 WVGQNDLRRDVIYR----LNMEDEKYEQIPFPNDDGY-FPYIRVFN--GALHLTLSMEEY 312
           +V +   RR V  R     ++EDE++++IP P+  G      R+ N  G L   +     
Sbjct: 265 FVTRP--RRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYG 324

Query: 313 EYRIWKMKEDG---SWIKSFSV--IIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQ 351
           +  IW MK  G   SW K +S+   +P   K  L       +  + GK  ++LCL    +
Sbjct: 325 KLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGE 384

BLAST of CmoCh10G011900 vs. ExPASy Swiss-Prot
Match: Q8S8Q9 (F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-07
Identity = 78/376 (20.74%), Postives = 144/376 (38.30%), Query Frame = 0

Query: 13  LELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGD 72
           ++++P+++E +L +LP   +  CR+V K W +++ SS+      +  N     + + N D
Sbjct: 11  IDILPELLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHMSLQNSRRRILAAYNCD 70

Query: 73  RPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWL 132
               R L    L     EG   +        Y          +C G++ F          
Sbjct: 71  CGGRRKL----LPESRFEGDEEIV-------YLHCDASRPSMTCQGVICFP--------- 130

Query: 133 SSNTVVILNPMTNEYFEVP--------------KDEFKGNWLTCSYGFGFCPKTKHYKVI 192
             + +++LNP T++    P              K    GNW+    GFG       YKV+
Sbjct: 131 EQDWIIVLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWV---MGFGRDKVNGRYKVV 190

Query: 193 RNS----TVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFH-GCHGVYLNGGLHWVGQ 252
           R S     V     +V     ++       EW ++  P    + G   V +NG ++W+  
Sbjct: 191 RMSFAFWRVRQEEPVVECGVLDV----DTGEWRKLSPPPYVVNVGSKSVCVNGSIYWLHI 250

Query: 253 NDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRV---FNGALHLTLSMEEYEYRIWKMK 312
             + R  I  L++  E++ ++P P          V       L +T    E+   +W M 
Sbjct: 251 QTVYR--ILALDLHKEEFHKVPVPPTQITVDTQMVNLEDRLVLAITRVSPEWILEVWGMD 310

Query: 313 E-DGSWIKSFSVIIPTKNVLSF--SKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKME 364
                W K++S+ +  + V+S+   K     +   K   ++      +L  Y P  +++ 
Sbjct: 311 TYKEKWSKTYSISLDHR-VVSWRRQKRWFTPVAVSKQANLVFYDNKKRLFKYYPVKDEIR 356

BLAST of CmoCh10G011900 vs. ExPASy Swiss-Prot
Match: Q9LUP7 (Putative F-box protein At3g17500 OS=Arabidopsis thaliana OX=3702 GN=At3g17500 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.1e-05
Identity = 64/253 (25.30%), Postives = 110/253 (43.48%), Query Frame = 0

Query: 18  DVIELILSKLPYYYLPSCRLVCKTWNNVI----LSSKHDPSISAASNFLFAHVYSNNGDR 77
           D++E ILS++P   L   R  CK+WNN       + KH  S+ AA  FL   +       
Sbjct: 8   DLVEEILSRVPATSLKRLRSTCKSWNNCYKDQRFTEKH--SVIAAKQFLVLMLKD----- 67

Query: 78  PSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLS 137
                +  + ++ + +    +  S  L+     +  IS I  C+GLL    TK+ +    
Sbjct: 68  ---CRVSSVSVNLNEIHNNIAAPSIELKGVVGPQMQISGIFHCDGLL-LCTTKDDR---- 127

Query: 138 SNTVVILNPMTNEYFEVPKD-EFKGNWLTCSYGFGFC-PKTKH-YKVIRNSTVDDRNSIV 197
              + + NP T +   V     +K N     +  G+    ++H YK++R       N  +
Sbjct: 128 ---LEVWNPCTGQTRRVQHSIHYKTN---SEFVLGYVNNNSRHSYKILRY-----WNFYM 187

Query: 198 HNYK---SEIFAFGTRQEWTRIE--SPSCSFHGCHGVYLNGGLHWVGQNDLRR-DVIYRL 257
            NY+    EI+ F +   W  I+  +P C   G   V L G  +W+  ++ R  D+I R 
Sbjct: 188 SNYRVSEFEIYDFSS-DSWRFIDEVNPYCLTEG--EVSLKGNTYWLASDEKRDIDLILRF 231

BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match: A0A6J1HBS1 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 SV=1)

HSP 1 Score: 801.6 bits (2069), Expect = 1.4e-228
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0

Query: 1   MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
           MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN
Sbjct: 1   MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60

Query: 61  FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
           FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL
Sbjct: 61  FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120

Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
           AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN
Sbjct: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180

Query: 181 STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV 240
           STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV
Sbjct: 181 STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV 240

Query: 241 IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS 300
           IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS
Sbjct: 241 IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS 300

Query: 301 VIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSV 360
           VIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSV
Sbjct: 301 VIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFSV 360

Query: 361 HNIDCFNFNAFSDILTVNFESN 383
           HNIDCFNFNAFSDILTVNFESN
Sbjct: 361 HNIDCFNFNAFSDILTVNFESN 382

BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match: A0A6J1HAB5 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462002 PE=4 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 8.0e-195
Identity = 330/386 (85.49%), Postives = 352/386 (91.19%), Query Frame = 0

Query: 1   MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
           MANDQDIISNK  ELIPDVI+LI SKLPYYYLPSCRLVCKTWN+VILSSKHDPSIS ASN
Sbjct: 1   MANDQDIISNKTPELIPDVIDLIFSKLPYYYLPSCRLVCKTWNDVILSSKHDPSISPASN 60

Query: 61  FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
           FL AHVYSN  DR SFRNLHCLELD DHVEGVRS+ASFNLRRKYFRRSFISTINSCNGLL
Sbjct: 61  FLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRSFISTINSCNGLL 120

Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
           AFVVTK TK WL+SN VVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFCPKTKHYKV+RN
Sbjct: 121 AFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRN 180

Query: 181 STVDDRNSIV--------HNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVG 240
           STV+DRNS V        +NYKSEIFAFGTRQEWTRIESPSCSF+GCHGVYLNGGLHWVG
Sbjct: 181 STVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCHGVYLNGGLHWVG 240

Query: 241 QNDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKED 300
           Q+DL +DVIYRLNMEDEKYE IPFPNDDGYFP I VFNGALHLT+SME +EY +WKMKED
Sbjct: 241 QDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSMEGHEYTMWKMKED 300

Query: 301 GSWIKSFSVIIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLM 360
           GSWIK+FS I+P  +KN+LSFSKSTVEQIK  KDGKILC+WAGA+LVLYDP+TEKMEKLM
Sbjct: 301 GSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVLYDPQTEKMEKLM 360

Query: 361 DDTIVRNFSVHNIDCFNFNAFSDILT 377
           DDTI R+FSVHNIDCFNFNA SDILT
Sbjct: 361 DDTIARDFSVHNIDCFNFNALSDILT 386

BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match: A0A6J1HA63 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462009 PE=4 SV=1)

HSP 1 Score: 686.8 bits (1771), Expect = 5.2e-194
Identity = 325/384 (84.64%), Postives = 351/384 (91.41%), Query Frame = 0

Query: 1   MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
           MANDQDIISNKI ELIPDV+ELILSKLPYYYLPSCRLVCKTWN+VILSSKHDPSIS ASN
Sbjct: 1   MANDQDIISNKISELIPDVVELILSKLPYYYLPSCRLVCKTWNDVILSSKHDPSISTASN 60

Query: 61  FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
           FL AHVY N  DR SFRNLHCLELD DHVEGVRSVASFNL RKYFRRSFISTINSCNGLL
Sbjct: 61  FLLAHVYFNRCDRLSFRNLHCLELDSDHVEGVRSVASFNLCRKYFRRSFISTINSCNGLL 120

Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
           AFVVTKNTK WL+SNTVVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFCPKTKHYKV+RN
Sbjct: 121 AFVVTKNTKSWLNSNTVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRN 180

Query: 181 STVDDRNSIVH------NYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQN 240
           ST++DRNS +       NYKSEIF+FGTRQEWTRIESPSCSF+GCHGVYLNGGLHW+GQ+
Sbjct: 181 STIEDRNSTIEDRYSTVNYKSEIFSFGTRQEWTRIESPSCSFNGCHGVYLNGGLHWIGQD 240

Query: 241 DLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGS 300
           DL +DVIYRLNMEDEKY+ IPFPNDDGYFP I VFNGALHLTLSME +EY +WKMKEDGS
Sbjct: 241 DLYQDVIYRLNMEDEKYKHIPFPNDDGYFPCIGVFNGALHLTLSMEGHEYTMWKMKEDGS 300

Query: 301 WIKSFSVIIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDD 360
           W K+FSVI+P  +KN+ SFSKSTVEQ+K  KDGKI C+WAG +LVLYDPKTEKM+KLMDD
Sbjct: 301 WSKAFSVIVPDVSKNIFSFSKSTVEQVKICKDGKIFCVWAGVELVLYDPKTEKMKKLMDD 360

Query: 361 TIVRNFSVHNIDCFNFNAFSDILT 377
           TIVR+FS+HNIDCFNFNA SDILT
Sbjct: 361 TIVRDFSIHNIDCFNFNALSDILT 384

BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match: A0A6J1HBS8 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 7.4e-193
Identity = 326/378 (86.24%), Postives = 349/378 (92.33%), Query Frame = 0

Query: 1   MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
           MANDQDIISNKI +LIPDV+ELIL+ LPYYYLPSCRLVC+TWN+VILSSK+DPSISAASN
Sbjct: 1   MANDQDIISNKIPKLIPDVVELILNILPYYYLPSCRLVCRTWNDVILSSKYDPSISAASN 60

Query: 61  FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
           FL AHVYSN  DR SFRNLHCLELD DHVEGV+SVASFNLRRKYFRRSFISTINSCNGLL
Sbjct: 61  FLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVKSVASFNLRRKYFRRSFISTINSCNGLL 120

Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
           AFVVTKNTK WL+SNTVVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFCPKTKHYKV+RN
Sbjct: 121 AFVVTKNTKSWLNSNTVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRN 180

Query: 181 STVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDV 240
           STV+DRNS V NYKSEIFAFGTRQEWTRIESPS SF+GCHGVYLNGGLHWVGQ+DL  DV
Sbjct: 181 STVEDRNSTV-NYKSEIFAFGTRQEWTRIESPSYSFNGCHGVYLNGGLHWVGQDDLHHDV 240

Query: 241 IYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFS 300
           IYRLNMEDEKYE IPFPNDDGYFP I VFNGALHLTLSME +EY +WKMKEDGSWIK+FS
Sbjct: 241 IYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTLSMEGHEYTMWKMKEDGSWIKAFS 300

Query: 301 VIIPT--KNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNF 360
             +P   KN+LSFS+ST+EQ+K  KDGKILC+WAGA+LVLYDPKTEKMEKLMDDTI R F
Sbjct: 301 TSVPDVGKNILSFSQSTLEQVKICKDGKILCVWAGAELVLYDPKTEKMEKLMDDTIAREF 360

Query: 361 SVHNIDCFNFNAFSDILT 377
           SVHNIDCFNFNA  DILT
Sbjct: 361 SVHNIDCFNFNALPDILT 377

BLAST of CmoCh10G011900 vs. ExPASy TrEMBL
Match: A0A6J1HYC7 (F-box protein At3g07870-like OS=Cucurbita maxima OX=3661 GN=LOC111467985 PE=4 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 4.8e-192
Identity = 325/380 (85.53%), Postives = 345/380 (90.79%), Query Frame = 0

Query: 1   MANDQDIISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN 60
           MANDQDIISNKI ELI DV+ELILSKLPYYYLPSCRLVCKTWNNVILSSK+D SISA SN
Sbjct: 1   MANDQDIISNKIPELIHDVVELILSKLPYYYLPSCRLVCKTWNNVILSSKYDLSISADSN 60

Query: 61  FLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLL 120
           FL AHVYSN  D PSFR+LHCLELDPDHV+GVRSVAS NL RKYF+ SFISTINSCNGLL
Sbjct: 61  FLLAHVYSNRRDCPSFRDLHCLELDPDHVKGVRSVASLNLHRKYFQHSFISTINSCNGLL 120

Query: 121 AFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRN 180
           AFVVTKNTKRWL+ NTVVI NPMTNEY E+PKDEFK   L CSYGFGFCP+TK YKV+RN
Sbjct: 121 AFVVTKNTKRWLTPNTVVIFNPMTNEYLELPKDEFKRKRLNCSYGFGFCPRTKQYKVVRN 180

Query: 181 STVDDRNSIVH-NYKSEIFAFGTRQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRD 240
           STVDDRNS VH NYKSEIFAFGTRQEWTRIESPSCSFHGCHG YLNGGLHW+GQNDL  +
Sbjct: 181 STVDDRNSTVHSNYKSEIFAFGTRQEWTRIESPSCSFHGCHGAYLNGGLHWIGQNDLGYN 240

Query: 241 VIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSF 300
           VIYRLNMEDEKY+QIPFPN DGYFPYI VFNGALHLT+SMEEYEYRIWKM+ DGSWIKSF
Sbjct: 241 VIYRLNMEDEKYKQIPFPNHDGYFPYIGVFNGALHLTISMEEYEYRIWKMEGDGSWIKSF 300

Query: 301 SVIIPTKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIVRNFS 360
           SVI+PTKN++SFSKSTVEQIKT KDGKILC+WAGAQ VLYDPKTE MEKLM+DTIVR FS
Sbjct: 301 SVIVPTKNIISFSKSTVEQIKTCKDGKILCVWAGAQFVLYDPKTETMEKLMEDTIVRYFS 360

Query: 361 VHNIDCFNFNAFSDILTVNF 380
           VHNIDCFNF+A  DILT  F
Sbjct: 361 VHNIDCFNFSALRDILTGKF 380

BLAST of CmoCh10G011900 vs. TAIR 10
Match: AT3G07870.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 79.7 bits (195), Expect = 5.5e-15
Identity = 105/384 (27.34%), Postives = 159/384 (41.41%), Query Frame = 0

Query: 13  LELIP-DVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASN----FLFAHVY 72
           LE +P D+I  I S+LP   +     VC++W +V+  ++H    S++S+     L  H  
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVL--TQHGRLSSSSSSPTKPCLLLHC- 84

Query: 73  SNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKN 132
               D P    LH L+L  +  E       F LR       F   + SCNGLL    +  
Sbjct: 85  ----DSPIRNGLHFLDLSEE--EKRIKTKKFTLRFASSMPEF-DVVGSCNGLLCLSDS-- 144

Query: 133 TKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIR----NSTV 192
               L ++++ + NP T    E+P+   K +     +GFGF   TK YKV++      + 
Sbjct: 145 ----LYNDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSS 204

Query: 193 DDRNSIVH-----NYKSEIFAFGTRQEWTRIESPSCSFHG---------CHGVYLNGGLH 252
            + N I        YK       T    T  +S S    G              +NG LH
Sbjct: 205 SNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLH 264

Query: 253 WVGQNDLRRDVIYR----LNMEDEKYEQIPFPNDDGY-FPYIRVFN--GALHLTLSMEEY 312
           +V +   RR V  R     ++EDE++++IP P+  G      R+ N  G L   +     
Sbjct: 265 FVTRP--RRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYG 324

Query: 313 EYRIWKMKEDG---SWIKSFSV--IIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQ 351
           +  IW MK  G   SW K +S+   +P   K  L       +  + GK  ++LCL    +
Sbjct: 325 KLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGE 384

BLAST of CmoCh10G011900 vs. TAIR 10
Match: AT2G43260.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-08
Identity = 78/376 (20.74%), Postives = 144/376 (38.30%), Query Frame = 0

Query: 13  LELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGD 72
           ++++P+++E +L +LP   +  CR+V K W +++ SS+      +  N     + + N D
Sbjct: 11  IDILPELLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHMSLQNSRRRILAAYNCD 70

Query: 73  RPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWL 132
               R L    L     EG   +        Y          +C G++ F          
Sbjct: 71  CGGRRKL----LPESRFEGDEEIV-------YLHCDASRPSMTCQGVICFP--------- 130

Query: 133 SSNTVVILNPMTNEYFEVP--------------KDEFKGNWLTCSYGFGFCPKTKHYKVI 192
             + +++LNP T++    P              K    GNW+    GFG       YKV+
Sbjct: 131 EQDWIIVLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWV---MGFGRDKVNGRYKVV 190

Query: 193 RNS----TVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSFH-GCHGVYLNGGLHWVGQ 252
           R S     V     +V     ++       EW ++  P    + G   V +NG ++W+  
Sbjct: 191 RMSFAFWRVRQEEPVVECGVLDV----DTGEWRKLSPPPYVVNVGSKSVCVNGSIYWLHI 250

Query: 253 NDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRV---FNGALHLTLSMEEYEYRIWKMK 312
             + R  I  L++  E++ ++P P          V       L +T    E+   +W M 
Sbjct: 251 QTVYR--ILALDLHKEEFHKVPVPPTQITVDTQMVNLEDRLVLAITRVSPEWILEVWGMD 310

Query: 313 E-DGSWIKSFSVIIPTKNVLSF--SKSTVEQIKTGKDGKILCLWAGAQLVLYDPKTEKME 364
                W K++S+ +  + V+S+   K     +   K   ++      +L  Y P  +++ 
Sbjct: 311 TYKEKWSKTYSISLDHR-VVSWRRQKRWFTPVAVSKQANLVFYDNKKRLFKYYPVKDEIR 356

BLAST of CmoCh10G011900 vs. TAIR 10
Match: AT5G41490.1 (F-box associated ubiquitination effector family protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 67/309 (21.68%), Postives = 118/309 (38.19%), Query Frame = 0

Query: 8   ISNKILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSS-----KHDPSISAASNFL 67
           ++  I  L  D+IE I+S++P   + + RL CK+WNN+  S      + D + +     +
Sbjct: 1   MATMITNLRRDLIEEIISRVPLRSMKAVRLTCKSWNNISKSEIFTKMQIDKATTREGKTM 60

Query: 68  FAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYF-RRSFISTINSCNGLLA 127
              V  +N           L L    V+ V     F  +  +   +  I  +  C GLL 
Sbjct: 61  MISVMPHN-----------LSLMSVAVDDVDPSVEFKGQLSFLCNQVSIHKVIHCEGLLL 120

Query: 128 FVVTKNTKRWLSSNTVVILNPMTNE------YFEVPKDEFKGNWLTCSYGF---GFCPKT 187
             +  +T+       VV+ NP + +       +  P    K +W   + G+   G C   
Sbjct: 121 CFLKDHTR-------VVVWNPYSGQTRWVKLRYPHPPSPSKWDWFRYALGYEDKGSCRSV 180

Query: 188 KHYKVIRNSTVDDRNSIVHNYKSEIFAFGTRQEWTRIESPSCSF--HGCHGVYLNGGLHW 247
           K  + +     +  N    N   EI+ F +   WT ++  S S+  +   GV+L G  +W
Sbjct: 181 KFLRFLDYLPEEPEN---QNVCYEIYDFDS-DLWTTLDVTSHSWICYSSCGVFLKGNAYW 240

Query: 248 ---VGQNDLRRDVIYRLNMEDEKYE---QIPFPNDDGYFPYIRVF------NGALHLTLS 288
                 ++   D I   +   E +     +PF   D  + Y+ +         A      
Sbjct: 241 PVVKSSSEANIDHIIYFDFTRESFGPPLPLPFGATDRGYSYVNLSCVKEEKLAAFFQHYI 287

BLAST of CmoCh10G011900 vs. TAIR 10
Match: AT3G17500.1 (F-box family protein )

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-06
Identity = 64/253 (25.30%), Postives = 110/253 (43.48%), Query Frame = 0

Query: 18  DVIELILSKLPYYYLPSCRLVCKTWNNVI----LSSKHDPSISAASNFLFAHVYSNNGDR 77
           D++E ILS++P   L   R  CK+WNN       + KH  S+ AA  FL   +       
Sbjct: 7   DLVEEILSRVPATSLKRLRSTCKSWNNCYKDQRFTEKH--SVIAAKQFLVLMLKD----- 66

Query: 78  PSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLS 137
                +  + ++ + +    +  S  L+     +  IS I  C+GLL    TK+ +    
Sbjct: 67  ---CRVSSVSVNLNEIHNNIAAPSIELKGVVGPQMQISGIFHCDGLL-LCTTKDDR---- 126

Query: 138 SNTVVILNPMTNEYFEVPKD-EFKGNWLTCSYGFGFC-PKTKH-YKVIRNSTVDDRNSIV 197
              + + NP T +   V     +K N     +  G+    ++H YK++R       N  +
Sbjct: 127 ---LEVWNPCTGQTRRVQHSIHYKTN---SEFVLGYVNNNSRHSYKILRY-----WNFYM 186

Query: 198 HNYK---SEIFAFGTRQEWTRIE--SPSCSFHGCHGVYLNGGLHWVGQNDLRR-DVIYRL 257
            NY+    EI+ F +   W  I+  +P C   G   V L G  +W+  ++ R  D+I R 
Sbjct: 187 SNYRVSEFEIYDFSS-DSWRFIDEVNPYCLTEG--EVSLKGNTYWLASDEKRDIDLILRF 230

BLAST of CmoCh10G011900 vs. TAIR 10
Match: AT3G17320.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.6e-04
Identity = 55/248 (22.18%), Postives = 95/248 (38.31%), Query Frame = 0

Query: 11  KILELIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNN 70
           KI +L  D+ E +LS++P  YL + R  CK WN +         +        A V   +
Sbjct: 3   KISDLPRDLAEEVLSRVPVTYLRAIRFTCKKWNTLTKRRSFTKKLIGQEK-AEAKVKEFH 62

Query: 71  GDRPSFRNLHCLELDPDHVEGVRSV-ASFNLRRKYFR-------RSFISTINSCNGLLAF 130
                   LH + ++ D +    +V +S   + K          R  IS +  C+GLL  
Sbjct: 63  AIMTLNSRLHLMSVNLDGIHKDENVESSIKQKGKLISLTVADPDRIVISQVYHCDGLLLC 122

Query: 131 VVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKH-YKVIR-- 190
           +  +   R      +V+ NP + +   +        W   + G+      K  YK++R  
Sbjct: 123 ITNEINSR------LVVWNPYSGQTRWIEPRTSYREWDIYALGYESKNNAKRSYKILRYL 182

Query: 191 -------NSTVDDRNSIVHNYKSEIFAFGTRQEWTRIESPS----CSFHGCHGVYLNGGL 237
                  + +V+ R  +    + EI++  T   W  IE  +    C  H   GV L G  
Sbjct: 183 DAYEDMGDMSVEPRTRVC---EFEIYSLDT-NSWKVIEVTTDWDLCFLH--RGVTLKGNT 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SFC77.8e-1427.34F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1[more]
Q8S8Q92.4e-0720.74F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 ... [more]
Q9LUP75.1e-0525.30Putative F-box protein At3g17500 OS=Arabidopsis thaliana OX=3702 GN=At3g17500 PE... [more]
Match NameE-valueIdentityDescription
A0A6J1HBS11.4e-228100.00F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 ... [more]
A0A6J1HAB58.0e-19585.49F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462002 PE=4 ... [more]
A0A6J1HA635.2e-19484.64F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462009 PE=4 ... [more]
A0A6J1HBS87.4e-19386.24F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 ... [more]
A0A6J1HYC74.8e-19285.53F-box protein At3g07870-like OS=Cucurbita maxima OX=3661 GN=LOC111467985 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT3G07870.15.5e-1527.34F-box and associated interaction domains-containing protein [more]
AT2G43260.11.7e-0820.74F-box and associated interaction domains-containing protein [more]
AT5G41490.12.1e-0621.68F-box associated ubiquitination effector family protein [more]
AT3G17500.13.6e-0625.30F-box family protein [more]
AT3G17320.12.6e-0422.18F-box and associated interaction domains-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 16..55
e-value: 1.0E-6
score: 38.3
IPR001810F-box domainPFAMPF00646F-boxcoord: 11..55
e-value: 2.9E-9
score: 36.5
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 114..321
e-value: 4.9E-23
score: 79.6
NoneNo IPR availableGENE3D1.20.1280.50coord: 8..51
e-value: 7.6E-6
score: 27.5
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 19..306
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 19..306
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 17..52
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 74..350

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G011900.1CmoCh10G011900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding