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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCGAGTCTGTTTGTTGTTGCAACAACTTGCAACAAAATTTTGGTCTACATTTAGAAATTTGCACTCACAAAGCTTGTGCATCTCTTTGATCTCTGCATCTTGAGTTTGGCTTCACAATTGCAATATGAATCATTTGCCTAGTTTATGTTGGAATCGATATTGAATCATTTGCTTAATTTATGTTGGAATCGATATTGTGAATTTTGGTTTTGTTTCTTTGATTAATCTAGTTATTTATTTATTTATTTATTTATTTACTTATTGAGTTGGAATCATTTGGGCTAAGATATCTTATTCACAGTCTCCACATGAACTATTTGAATAAAAGTGTTTTGTTCTCCTCTTCAACAAATGTGGGATTCTCACAATCTATTCTTCTGGGGTCTAGTGTCTTTGTTGGCACTTGTTCTTTTCTCCAATCGATGTGGGACTCCCACCAAATCCTTATTGGCACACAGTCTCGTGTTTACCTCCTTCAGAAAATAGTCTCGTTGGCACATAGTCTAGTGTTGCCTCTGATATAATTTATATTGACTTAGGTCCATCGCAAGTAGATATTGTCCTCTTTGAGCTTTCTCTATCGGACTTCCCCTCATGCCTTTAAAATGTTTTTGCTAAGGAAAGGTTTTCACACCCTTATTACTTTATTTGATTAGCCTGTAAGGAAACGTTACAAAAATTAATATTTTATCTTTAAATATTTTTTTCCTTACACAAATCATTTTTTCATAATTTTCTCTACGTTACTCTCTGATTTTATATATATATATATATATATATATATATATATATATATATATATTCTTATTATTCAATTTTTTAATAATTATATTTAAATTAATTCAAAATAGAAAACAATATTAAAATATCAAATAAAAATTTCCTAAATTATTTTGAGCATAAATTCTATATTTGGATATGAAATTTTAATTAGGACACATATAGTTACTTGATTGGTAAGTATCTTATTTTTACATATTTTATACATAAATATTTTATTTTCAAATATTTTAAATCAAATATTTACATATCTTAAATTACAAATATTTAATAAATTTTTAAACTTTCAATTTATTATAAATATAATTTTAAATTATTTGATTACAAATTAAATTTTGAGTTAAAAATAAAATAAATTTTATACTGTCAAATCAAATAAAAAAGATTTATTTTATTTTTATTTATAATATTTAAAAAATCAAATTAAAGACTCCTAAATTATTTCCATCCTTCCTAAATTTTTTCTATATTTTCATATAGGTAAATATGGAAAACCTCAAATCTAGACTATTCAAAATATGAAAAGATAGATTTTTTTAAATTCAAAATAAAAAAAAGATTAATTTTTTAATTTATAAATACAGAACATTCAATTAAAGGTTAGTCCAGTTCTTAAATTCAATTCATCTGAAGCCATTAGCTTTCCTCTACGATTCAATCAAATTCACCAGCTTTTCCCAGTGATGGCTAATGATCAAGACATTATTAGCAACAAAACTCCCGAACTCATACCTGATGTCATCGACCTAATATTCAGCAAACTCCCTTACTATTATTTGCCGAGTTGCAGGTTGGTCTGCAAAACATGGAACGATGTGATCTTAAGTTCTAAACATGACCCTTCAATCTCGCCTGCTTCCAACTTTTTGCTTGCCCATGTTTATTCCAACCGCCGTGATCGTCTCTCATTTCGTAATCTACATTGCTTGGAATTGGATTCAGACCACGTGGAAGGGGTGAGGAGTATTGCTTCATTCAACTTGCGTCGTAAGTATTTCCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGACTCTTAGCTTTTGTAGTCACCAAAAAAACAAAGAGCTGGCTTAACTCGAATATAGTCGTCATATTAAATCCCATGACGAATGAGTACTTTGAACTTCCCAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACAAAGCACTACAAAGTAGTAAGAAACTCCACCGTGGAAGATAGAAACTCCACCGTGGAAGATAGAAACTCCACCGTCCATAATAACTACAAATCAGAGATTTTTGCTTTTGGGACCCGGCAGGAATGGACGCGTATTGAGTCACCGTCCTGTTCTTTTAATGGATGTCATGGTGTTTACTTGAATGGAGGGTTGCATTGGGTTGGACAAGATGATCTTCATCAAGACGTTATTTATCGTCTAAATATGGAAGATGAGAAGTACGAGCACATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGGAGTATTTAATGGTGCTCTTCATCTAACTGTTTCTATGGAGGGGCACGAGTACACGATGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTTCCATCGTACCAGATGTGAGCAAAAATATTCTTTCTTTTTCAAAATCAACCGTGGAACAGATTAAAATATGTAAAGATGGAAAGATCTTGTGTGTTTGGGCGGGAGCTGAATTAGTATTGTATGATCCGCAGACCGAGAAGATGGAGAAGTTGATGGATGATACAATTGCGAGAGATTTTTCGGTTCACAACATCGACTGCTTTAATTTTAATGCTCTTTCCGATATTTTGACTCGAAAAATATGTAAATTTTGA mRNA sequence ATGCGAGTCTGTTTGTTGTTGCAACAACTTGCAACAAAATTTTGGTCTACATTTAGAAATTTGCACTCACAAAGCTTTTCTAAACATGACCCTTCAATCTCGCCTGCTTCCAACTTTTTGCTTGCCCATGTTTATTCCAACCGCCGTGATCGTCTCTCATTTCGTAATCTACATTGCTTGGAATTGGATTCAGACCACGTGGAAGGGGTGAGGAGTATTGCTTCATTCAACTTGCGTCGTAAGTATTTCCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGACTCTTAGCTTTTGTAGTCACCAAAAAAACAAAGAGCTGGCTTAACTCGAATATAGTCGTCATATTAAATCCCATGACGAATGAGTACTTTGAACTTCCCAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACAAAGCACTACAAAGTAGTAAGAAACTCCACCGTGGAAGATAGAAACTCCACCGTGGAAGATAGAAACTCCACCGTCCATAATAACTACAAATCAGAGATTTTTGCTTTTGGGACCCGGCAGGAATGGACGCGTATTGAGTCACCGTCCTGTTCTTTTAATGGATGTCATGGTGTTTACTTGAATGGAGGGTTGCATTGGGTTGGACAAGATGATCTTCATCAAGACGTTATTTATCGTCTAAATATGGAAGATGAGAAGTACGAGCACATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGGAGTATTTAATGGTGCTCTTCATCTAACTGTTTCTATGGAGGGGCACGAGTACACGATGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTTCCATCGTACCAGATGTGAGCAAAAATATTCTTTCTTTTTCAAAATCAACCGTGGAACAGATTAAAATATGTAAAGATGGAAAGATCTTGTGTGTTTGGGCGGGAGCTGAATTAGTATTGTATGATCCGCAGACCGAGAAGATGGAGAAGTTGATGGATGATACAATTGCGAGAGATTTTTCGGTTCACAACATCGACTGCTTTAATTTTAATGCTCTTTCCGATATTTTGACTCGAAAAATATGTAAATTTTGA Coding sequence (CDS) ATGCGAGTCTGTTTGTTGTTGCAACAACTTGCAACAAAATTTTGGTCTACATTTAGAAATTTGCACTCACAAAGCTTTTCTAAACATGACCCTTCAATCTCGCCTGCTTCCAACTTTTTGCTTGCCCATGTTTATTCCAACCGCCGTGATCGTCTCTCATTTCGTAATCTACATTGCTTGGAATTGGATTCAGACCACGTGGAAGGGGTGAGGAGTATTGCTTCATTCAACTTGCGTCGTAAGTATTTCCGACGTTCTTTTATCTCAACTATTAATTCGTGCAATGGACTCTTAGCTTTTGTAGTCACCAAAAAAACAAAGAGCTGGCTTAACTCGAATATAGTCGTCATATTAAATCCCATGACGAATGAGTACTTTGAACTTCCCAAGGACGAATTCAAAGGGAATTGGCTTACGTGCTCCTATGGATTTGGATTTTGTCCTAAAACAAAGCACTACAAAGTAGTAAGAAACTCCACCGTGGAAGATAGAAACTCCACCGTGGAAGATAGAAACTCCACCGTCCATAATAACTACAAATCAGAGATTTTTGCTTTTGGGACCCGGCAGGAATGGACGCGTATTGAGTCACCGTCCTGTTCTTTTAATGGATGTCATGGTGTTTACTTGAATGGAGGGTTGCATTGGGTTGGACAAGATGATCTTCATCAAGACGTTATTTATCGTCTAAATATGGAAGATGAGAAGTACGAGCACATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGGAGTATTTAATGGTGCTCTTCATCTAACTGTTTCTATGGAGGGGCACGAGTACACGATGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTTCCATCGTACCAGATGTGAGCAAAAATATTCTTTCTTTTTCAAAATCAACCGTGGAACAGATTAAAATATGTAAAGATGGAAAGATCTTGTGTGTTTGGGCGGGAGCTGAATTAGTATTGTATGATCCGCAGACCGAGAAGATGGAGAAGTTGATGGATGATACAATTGCGAGAGATTTTTCGGTTCACAACATCGACTGCTTTAATTTTAATGCTCTTTCCGATATTTTGACTCGAAAAATATGTAAATTTTGA Protein sequence MRVCLLLQQLATKFWSTFRNLHSQSFSKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRSFISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCHGVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSMEGHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVLYDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKICKF
Homology
BLAST of CmoCh10G011890 vs. ExPASy Swiss-Prot
Match: Q9SFC7 (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 6.0e-11 Identity = 86/358 (24.02%), Postives = 140/358 (39.11%), Query Frame = 0
Query: 17 TFRNLHSQSFSKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASF 76
++R++ +Q S SP LL H S R+ L F LD E F
Sbjct: 54 SWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIRNGLHF-------LDLSEEEKRIKTKKF 113
Query: 77 NLRRKYFRRSFISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGN 136
LR F + SCNGLL L ++ + + NP T ELP+ K +
Sbjct: 114 TLRFASSMPEF-DVVGSCNGLLCL------SDSLYNDSLYLYNPFTTNSLELPECSNKYH 173
Query: 137 WLTCSYGFGFCPKTKHYKVVR----NSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQ-- 196
+GFGF TK YKV++ + + N R + + +I ++
Sbjct: 174 DQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTD 233
Query: 197 ---EWTRI-ESPSCSFNGCHGVYLNGGLHWVGQDDLH--QDVIYRLNMEDEKYEHIPFPN 256
W + ++P +NG LH+V + H ++EDE+++ IP P+
Sbjct: 234 QSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPD 293
Query: 257 DDGYFPCIGVFNGALHLTVSMEG----------HEYTMWKMKEDG---SWIKAFS--SIV 316
G N H V+++G + +W MK G SW K +S + +
Sbjct: 294 -------CGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYL 353
Query: 317 PDVSKNIL---------SFSKSTVEQIKICKDGKILCVWAGAELVLYDPQTEKMEKLM 339
P K L + + V + + ++G+IL + LV YDP+ K + L+
Sbjct: 354 PKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLL 390
BLAST of CmoCh10G011890 vs. ExPASy TrEMBL
Match: A0A6J1HAB5 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462002 PE=4 SV=1) HSP 1 Score: 726.5 bits (1874), Expect = 5.7e-206 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query: 27 SKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRS 86
SKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRS
Sbjct: 49 SKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRS 108
Query: 87 FISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 146
FISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF
Sbjct: 109 FISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 168
Query: 147 CPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCH 206
CPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCH
Sbjct: 169 CPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCH 228
Query: 207 GVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSME 266
GVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSME
Sbjct: 229 GVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSME 288
Query: 267 GHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVL 326
GHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVL
Sbjct: 289 GHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVL 348
Query: 327 YDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKICKF 371
YDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKICKF
Sbjct: 349 YDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKICKF 392
BLAST of CmoCh10G011890 vs. ExPASy TrEMBL
Match: A0A6J1HA63 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462009 PE=4 SV=1) HSP 1 Score: 666.4 bits (1718), Expect = 7.0e-188 Identity = 314/343 (91.55%), Postives = 326/343 (95.04%), Query Frame = 0
Query: 27 SKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRS 86
SKHDPSIS ASNFLLAHVY NR DRLSFRNLHCLELDSDHVEGVRS+ASFNL RKYFRRS
Sbjct: 49 SKHDPSISTASNFLLAHVYFNRCDRLSFRNLHCLELDSDHVEGVRSVASFNLCRKYFRRS 108
Query: 87 FISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 146
FISTINSCNGLLAFVVTK TKSWLNSN VVILNPMTNEYFELPKDEFKGNWLTCSYGFGF
Sbjct: 109 FISTINSCNGLLAFVVTKNTKSWLNSNTVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 168
Query: 147 CPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCH 206
CPKTKHYKVVRNST+EDRNST+EDR STV NYKSEIF+FGTRQEWTRIESPSCSFNGCH
Sbjct: 169 CPKTKHYKVVRNSTIEDRNSTIEDRYSTV--NYKSEIFSFGTRQEWTRIESPSCSFNGCH 228
Query: 207 GVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSME 266
GVYLNGGLHW+GQDDL+QDVIYRLNMEDEKY+HIPFPNDDGYFPCIGVFNGALHLT+SME
Sbjct: 229 GVYLNGGLHWIGQDDLYQDVIYRLNMEDEKYKHIPFPNDDGYFPCIGVFNGALHLTLSME 288
Query: 267 GHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVL 326
GHEYTMWKMKEDGSW KAFS IVPDVSKNI SFSKSTVEQ+KICKDGKI CVWAG ELVL
Sbjct: 289 GHEYTMWKMKEDGSWSKAFSVIVPDVSKNIFSFSKSTVEQVKICKDGKIFCVWAGVELVL 348
Query: 327 YDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKICK 370
YDP+TEKM+KLMDDTI RDFS+HNIDCFNFNALSDILT KI K
Sbjct: 349 YDPKTEKMKKLMDDTIVRDFSIHNIDCFNFNALSDILTGKIGK 389
BLAST of CmoCh10G011890 vs. ExPASy TrEMBL
Match: A0A6J1HAC0 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462008 PE=4 SV=1) HSP 1 Score: 660.2 bits (1702), Expect = 5.0e-186 Identity = 315/343 (91.84%), Postives = 324/343 (94.46%), Query Frame = 0
Query: 28 KHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRSF 87
KHDPSIS SNFLLAHVYSNRRDRLSFRNLH LELDSDHVEGVRS+ASFNLRRKYFRRSF
Sbjct: 50 KHDPSISADSNFLLAHVYSNRRDRLSFRNLHYLELDSDHVEGVRSVASFNLRRKYFRRSF 109
Query: 88 ISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGFC 147
ISTINSCNGLLAFVVTK TKSWLNSNIVVILNPMTNEYFE+PKDEFKGNWLTCSYGFGFC
Sbjct: 110 ISTINSCNGLLAFVVTKNTKSWLNSNIVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFC 169
Query: 148 PKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCHG 207
KTK+YKVV RNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCHG
Sbjct: 170 HKTKNYKVV-------RNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCHG 229
Query: 208 VYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSMEG 267
VYLNGGLHWVGQDDLH DVIYRLNMEDEKY++IPFPNDDGYFPCIGVFNGALHLT+SMEG
Sbjct: 230 VYLNGGLHWVGQDDLHHDVIYRLNMEDEKYQNIPFPNDDGYFPCIGVFNGALHLTLSMEG 289
Query: 268 HEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVLY 327
HEYTMWKMKEDGSWIKAFS VPDVSKNILSFS STVEQIK+CKDGKILCVWAGAELVLY
Sbjct: 290 HEYTMWKMKEDGSWIKAFSVSVPDVSKNILSFSPSTVEQIKVCKDGKILCVWAGAELVLY 349
Query: 328 DPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKICKF 371
DP+TEKMEKLMDDTIARDFSVHNI+ FNFNAL DILT KICKF
Sbjct: 350 DPKTEKMEKLMDDTIARDFSVHNIESFNFNALPDILTGKICKF 385
BLAST of CmoCh10G011890 vs. ExPASy TrEMBL
Match: A0A6J1HBS8 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 SV=1) HSP 1 Score: 659.8 bits (1701), Expect = 6.5e-186 Identity = 313/341 (91.79%), Postives = 323/341 (94.72%), Query Frame = 0
Query: 27 SKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRS 86
SK+DPSIS ASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGV+S+ASFNLRRKYFRRS
Sbjct: 49 SKYDPSISAASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVKSVASFNLRRKYFRRS 108
Query: 87 FISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 146
FISTINSCNGLLAFVVTK TKSWLNSN VVILNPMTNEYFELPKDEFKGNWLTCSYGFGF
Sbjct: 109 FISTINSCNGLLAFVVTKNTKSWLNSNTVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 168
Query: 147 CPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCH 206
CPKTKHYKVVRNSTVEDRNSTV NYKSEIFAFGTRQEWTRIESPS SFNGCH
Sbjct: 169 CPKTKHYKVVRNSTVEDRNSTV---------NYKSEIFAFGTRQEWTRIESPSYSFNGCH 228
Query: 207 GVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSME 266
GVYLNGGLHWVGQDDLH DVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLT+SME
Sbjct: 229 GVYLNGGLHWVGQDDLHHDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTLSME 288
Query: 267 GHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVL 326
GHEYTMWKMKEDGSWIKAFS+ VPDV KNILSFS+ST+EQ+KICKDGKILCVWAGAELVL
Sbjct: 289 GHEYTMWKMKEDGSWIKAFSTSVPDVGKNILSFSQSTLEQVKICKDGKILCVWAGAELVL 348
Query: 327 YDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILTRKI 368
YDP+TEKMEKLMDDTIAR+FSVHNIDCFNFNAL DILT KI
Sbjct: 349 YDPKTEKMEKLMDDTIAREFSVHNIDCFNFNALPDILTGKI 380
BLAST of CmoCh10G011890 vs. ExPASy TrEMBL
Match: A0A6J1HBS1 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 SV=1) HSP 1 Score: 602.4 bits (1552), Expect = 1.2e-168 Identity = 287/338 (84.91%), Postives = 307/338 (90.83%), Query Frame = 0
Query: 27 SKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASFNLRRKYFRRS 86
SKHDPSIS ASNFL AHVYSN DR SFRNLHCLELD DHVEGVRS+ASFNLRRKYFRRS
Sbjct: 49 SKHDPSISAASNFLFAHVYSNNGDRPSFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRS 108
Query: 87 FISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGNWLTCSYGFGF 146
FISTINSCNGLLAFVVTK TK WL+SN VVILNPMTNEYFE+PKDEFKGNWLTCSYGFGF
Sbjct: 109 FISTINSCNGLLAFVVTKNTKRWLSSNTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGF 168
Query: 147 CPKTKHYKVVRNSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQEWTRIESPSCSFNGCH 206
CPKTKHYKV+RNSTV+DRNS V +NYKSEIFAFGTRQEWTRIESPSCSF+GCH
Sbjct: 169 CPKTKHYKVIRNSTVDDRNSIV--------HNYKSEIFAFGTRQEWTRIESPSCSFHGCH 228
Query: 207 GVYLNGGLHWVGQDDLHQDVIYRLNMEDEKYEHIPFPNDDGYFPCIGVFNGALHLTVSME 266
GVYLNGGLHWVGQ+DL +DVIYRLNMEDEKYE IPFPNDDGYFP I VFNGALHLT+SME
Sbjct: 229 GVYLNGGLHWVGQNDLRRDVIYRLNMEDEKYEQIPFPNDDGYFPYIRVFNGALHLTLSME 288
Query: 267 GHEYTMWKMKEDGSWIKAFSSIVPDVSKNILSFSKSTVEQIKICKDGKILCVWAGAELVL 326
+EY +WKMKEDGSWIK+FS I+P +KN+LSFSKSTVEQIK KDGKILC+WAGA+LVL
Sbjct: 289 EYEYRIWKMKEDGSWIKSFSVIIP--TKNVLSFSKSTVEQIKTGKDGKILCLWAGAQLVL 348
Query: 327 YDPQTEKMEKLMDDTIARDFSVHNIDCFNFNALSDILT 365
YDP+TEKMEKLMDDTI R+FSVHNIDCFNFNA SDILT
Sbjct: 349 YDPKTEKMEKLMDDTIVRNFSVHNIDCFNFNAFSDILT 376
BLAST of CmoCh10G011890 vs. TAIR 10
Match: AT3G07870.1 (F-box and associated interaction domains-containing protein ) HSP 1 Score: 70.1 bits (170), Expect = 4.3e-12 Identity = 86/358 (24.02%), Postives = 140/358 (39.11%), Query Frame = 0
Query: 17 TFRNLHSQSFSKHDPSISPASNFLLAHVYSNRRDRLSFRNLHCLELDSDHVEGVRSIASF 76
++R++ +Q S SP LL H S R+ L F LD E F
Sbjct: 54 SWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIRNGLHF-------LDLSEEEKRIKTKKF 113
Query: 77 NLRRKYFRRSFISTINSCNGLLAFVVTKKTKSWLNSNIVVILNPMTNEYFELPKDEFKGN 136
LR F + SCNGLL L ++ + + NP T ELP+ K +
Sbjct: 114 TLRFASSMPEF-DVVGSCNGLLCL------SDSLYNDSLYLYNPFTTNSLELPECSNKYH 173
Query: 137 WLTCSYGFGFCPKTKHYKVVR----NSTVEDRNSTVEDRNSTVHNNYKSEIFAFGTRQ-- 196
+GFGF TK YKV++ + + N R + + +I ++
Sbjct: 174 DQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTD 233
Query: 197 ---EWTRI-ESPSCSFNGCHGVYLNGGLHWVGQDDLH--QDVIYRLNMEDEKYEHIPFPN 256
W + ++P +NG LH+V + H ++EDE+++ IP P+
Sbjct: 234 QSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPD 293
Query: 257 DDGYFPCIGVFNGALHLTVSMEG----------HEYTMWKMKEDG---SWIKAFS--SIV 316
G N H V+++G + +W MK G SW K +S + +
Sbjct: 294 -------CGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYL 353
Query: 317 PDVSKNIL---------SFSKSTVEQIKICKDGKILCVWAGAELVLYDPQTEKMEKLM 339
P K L + + V + + ++G+IL + LV YDP+ K + L+
Sbjct: 354 PKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLL 390
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9SFC7 | 6.0e-11 | 24.02 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1HAB5 | 5.7e-206 | 100.00 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462002 PE=4 ... | [more] |
| A0A6J1HA63 | 7.0e-188 | 91.55 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462009 PE=4 ... | [more] |
| A0A6J1HAC0 | 5.0e-186 | 91.84 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462008 PE=4 ... | [more] |
| A0A6J1HBS8 | 6.5e-186 | 91.79 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 ... | [more] |
| A0A6J1HBS1 | 1.2e-168 | 84.91 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G07870.1 | 4.3e-12 | 24.02 | F-box and associated interaction domains-containing protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR017451 | F-box associated interaction domain | TIGRFAM | TIGR01640 | TIGR01640 | coord: 92..298
e-value: 7.3E-21
score: 72.5 |
| None | No IPR available | PANTHER | PTHR47993:SF20 | F-BOX FAMILY PROTEIN | coord: 11..289 |
| None | No IPR available | PANTHER | PTHR47993 | OS09G0372900 PROTEIN-RELATED | coord: 11..289 |
| IPR011043 | Galactose oxidase/kelch, beta-propeller | SUPERFAMILY | 50965 | Galactose oxidase, central domain | coord: 181..339 |
Relationships
The following mRNA feature(s) are a part of this gene:
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