CmoCh10G011820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Resistance gene-like protein
Location	Cmo_Chr10: 10664734 .. 10665166 (-)
RNA-Seq Expression	CmoCh10G011820
Synteny	CmoCh10G011820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACGATGTGTTCATAAGTTTTAGAGGCAAAGATGTTCGCAAGAACTTCGTGGGATTTTTGCACCAAGAATTGGAGCGTTTGGGGCTAAAAGCTCTCGTAGACGAGAAAGAGTTCAAAATCGGAGAAGATCTATTCGATTTGTTCAAAATAATAGAAGAATCGAAGTTCGTGATTGTGATTCTTTCGAATAATTATGCTTCTTCCAAATGGTGTTTGAGAGAGCTTACCAAAATCATGGAGTCTATGGAAATGGCTCAAGCTCGTGCTCTTCCTGTGTTCTACCAGGTACAGCCTTCTGAAATTAGAAACCTTTCCAACCCTTTTCTTAAGAAGAAGTTTGTTAAGTTTAAAAGCTTTATGAAAGGAGTTGATGATCAAAAAATGCGAAGGAAATTGGAAGAGATTAAACGTTGGAAGAAGGCCATGA

mRNA sequence

ATGAAGTACGATGTGTTCATAAGTTTTAGAGGCAAAGATGTTCGCAAGAACTTCGTGGGATTTTTGCACCAAGAATTGGAGCGTTTGGGGCTAAAAGCTCTCGTAGACGAGAAAGAGTTCAAAATCGGAGAAGATCTATTCGATTTGTTCAAAATAATAGAAGAATCGAAGTTCGTGATTGTGATTCTTTCGAATAATTATGCTTCTTCCAAATGGTGTTTGAGAGAGCTTACCAAAATCATGGAGTCTATGGAAATGGCTCAAGCTCGTGCTCTTCCTGTGTTCTACCAGGAGTTGATGATCAAAAAATGCGAAGGAAATTGGAAGAGATTAAACGTTGGAAGAAGGCCATGA

Coding sequence (CDS)

ATGAAGTACGATGTGTTCATAAGTTTTAGAGGCAAAGATGTTCGCAAGAACTTCGTGGGATTTTTGCACCAAGAATTGGAGCGTTTGGGGCTAAAAGCTCTCGTAGACGAGAAAGAGTTCAAAATCGGAGAAGATCTATTCGATTTGTTCAAAATAATAGAAGAATCGAAGTTCGTGATTGTGATTCTTTCGAATAATTATGCTTCTTCCAAATGGTGTTTGAGAGAGCTTACCAAAATCATGGAGTCTATGGAAATGGCTCAAGCTCGTGCTCTTCCTGTGTTCTACCAGGAGTTGATGATCAAAAAATGCGAAGGAAATTGGAAGAGATTAAACGTTGGAAGAAGGCCATGA

Protein sequence

MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVIVILSNNYASSKWCLRELTKIMESMEMAQARALPVFYQELMIKKCEGNWKRLNVGRRP

Homology

[Close]

BLAST of CmoCh10G011820 vs. ExPASy Swiss-Prot
Match: A0A290U7C4 (Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-19
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 3   YDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDL-FDLFKIIEESKFVIV 62
           YDVF+SFRG+D RK FVG L   L   G+   +D+KE K G+ +  +L K I ES+F +V
Sbjct: 12  YDVFLSFRGEDTRKTFVGHLFNALIEKGIHTFMDDKELKRGKSISSELMKAIGESRFAVV 71

Query: 63  ILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           + S NYASS WCL EL KI+E  E  +   +PVFY
Sbjct: 72  VFSKNYASSTWCLEELVKILEIHEKFELIVVPVFY 106

[Close]

BLAST of CmoCh10G011820 vs. ExPASy Swiss-Prot
Match: Q40392 (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-18
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 3   YDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDL-FDLFKIIEESKFVIV 62
           YDVF+SFRG+D RK F   L++ L   G+K   D+K  + G  +  +L K IEES+F IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 63  ILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           + S NYA+S+WCL EL KIME     +   +P+FY
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFY 106

[Close]

BLAST of CmoCh10G011820 vs. ExPASy Swiss-Prot
Match: Q9SZ66 (Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVIV 61
           ++DVF+SFRG D R NF G L + L   G+ + +D++  + G++L  LF  IE+SK  I+
Sbjct: 10  EFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDR-LRRGDNLTALFDRIEKSKIAII 69

Query: 62  ILSNNYASSKWCLRELTKIMESMEMAQARALPVFYQ 98
           + S NYA+S WCLREL KI+E     Q   +P+FY+
Sbjct: 70  VFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYK 104

[Close]

BLAST of CmoCh10G011820 vs. ExPASy Swiss-Prot
Match: Q9SSN3 (Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana OX=3702 GN=TIR PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-17
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLF-DLFKIIEESKFVI 61
           KYDVF+SFRG D R NF+ FL++EL R  ++   D+KE + G+    +L   IE S+F +
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query: 62  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           V++S NYA+S WCL EL  IM+  +      +P+FY
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFY 103

[Close]

BLAST of CmoCh10G011820 vs. ExPASy Swiss-Prot
Match: O48573 (Disease resistance protein LAZ5 OS=Arabidopsis thaliana OX=3702 GN=LAZ5 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.7e-16
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 3   YDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVIVI 62
           + VFI+FRG D+R  F+  L   L   G+   +D +E    EDL  LFK IEES+  + I
Sbjct: 12  WQVFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVP-SEDLTVLFKRIEESEIALSI 71

Query: 63  LSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
            S+NYA SKWCL EL KIME ++  + R +PVF+
Sbjct: 72  FSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFF 104

[Close]

BLAST of CmoCh10G011820 vs. ExPASy TrEMBL
Match: A0A6J1HBR4 (toll/interleukin-1 receptor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461999 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI 60
          MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI
Sbjct: 1  MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI 60

Query: 61 VILSNNYASSKWCLRELTKIMESMEMAQARALPVFYQ 98
          VILSNNYASSKWCLRELTKIMESMEMAQARALPVFYQ
Sbjct: 61 VILSNNYASSKWCLRELTKIMESMEMAQARALPVFYQ 97

[Close]

BLAST of CmoCh10G011820 vs. ExPASy TrEMBL
Match: A0A6J1HAB0 (toll/interleukin-1 receptor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461997 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.9e-44
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI 60
          MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIG+DLFDLFKIIEE KFVI
Sbjct: 1  MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGDDLFDLFKIIEELKFVI 60

Query: 61 VILSNNYASSKWCLRELTKIMESMEMAQARALPVFYQ 98
          VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY+
Sbjct: 61 VILSNNYASSKWCLRELTKIMESMEMAQARALPVFYR 97

[Close]

BLAST of CmoCh10G011820 vs. ExPASy TrEMBL
Match: A0A1S4E362 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498648 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.8e-28
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI 60
           M YDVFISFRG+DVR  F G+L+  L RLG+KA +D K F IG+DL DLFKII+ES+  I
Sbjct: 14  MNYDVFISFRGRDVRHTFAGYLYDALNRLGIKAFLDNKRFLIGDDLHDLFKIIDESRSAI 73

Query: 61  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY--QELMIKKCEGNWK 110
           V+LS +YAS+KWCLRELTKIM+SM  +  R LPVFY     ++K   G +K
Sbjct: 74  VVLSEDYASAKWCLRELTKIMDSMGTSMERVLPVFYHIDPSIVKDQSGTFK 124

[Close]

BLAST of CmoCh10G011820 vs. ExPASy TrEMBL
Match: A0A5A7T7V5 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001220 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.8e-28
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI 60
           M YDVFISFRG+DVR  F G+L+  L RLG+KA +D K F IG+DL DLFKII+ES+  I
Sbjct: 14  MNYDVFISFRGRDVRHTFAGYLYDALNRLGIKAFLDNKRFLIGDDLHDLFKIIDESRSAI 73

Query: 61  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY--QELMIKKCEGNWK 110
           V+LS +YAS+KWCLRELTKIM+SM  +  R LPVFY     ++K   G +K
Sbjct: 74  VVLSEDYASAKWCLRELTKIMDSMGTSMERVLPVFYHIDPSIVKDQSGTFK 124

[Close]

BLAST of CmoCh10G011820 vs. ExPASy TrEMBL
Match: A0A0A0KXU0 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647530 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.8e-28
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MKYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLFDLFKIIEESKFVI 60
           M YDVFISFRG+DVR  F G+L+  L RLG+KA +D K F IG+DL DLFKII+ES+  I
Sbjct: 81  MNYDVFISFRGRDVRHTFAGYLYDALNRLGIKAFLDNKRFLIGDDLHDLFKIIDESRSAI 140

Query: 61  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY--QELMIKKCEGNWK 110
           V+LS +YAS+KWCLRELTKIM+SM  +  R LPVFY     ++K   G +K
Sbjct: 141 VVLSEDYASAKWCLRELTKIMDSMGTSMERVLPVFYHIDPSIVKDQSGTFK 191

[Close]

BLAST of CmoCh10G011820 vs. TAIR 10
Match: AT1G72950.1 (Disease resistance protein (TIR-NBS class) )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLF-DLFKIIEESKFVI 61
           K+DVF+SFRG D R++F+ FL++EL R  ++   D+KE K G  +  +L + IE S+F +
Sbjct: 10  KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query: 62  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           V++S NYA+S+WCL EL KIM+   M   + +P+FY
Sbjct: 70  VVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFY 105

[Close]

BLAST of CmoCh10G011820 vs. TAIR 10
Match: AT1G72920.1 (Toll-Interleukin-Resistance (TIR) domain family protein )

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-20
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLF-DLFKIIEESKFVI 61
           KYDVF+SFRG D R+NF+ FL++EL R  ++   D+KE + G  +  +L + IEESKF +
Sbjct: 8   KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query: 62  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           V++S NYA+S WCL EL KIM+         +P+FY
Sbjct: 68  VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFY 103

[Close]

BLAST of CmoCh10G011820 vs. TAIR 10
Match: AT1G72940.1 (Toll-Interleukin-Resistance (TIR) domain-containing protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDLF-DLFKIIEESKFVI 61
           KYDVF+SFRG D R+NF+ FL++E  R  ++   D+KE + G  +  +L + IEESKF +
Sbjct: 8   KYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query: 62  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           V++S NYA+S WCL EL KIM+         +P+FY
Sbjct: 68  VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFY 103

[Close]

BLAST of CmoCh10G011820 vs. TAIR 10
Match: AT1G17615.1 (Disease resistance protein (TIR-NBS class) )

HSP 1 Score: 90.5 bits (223), Expect = 9.6e-19
Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDL-FDLFKIIEESKFVI 61
           K+DVF+SFRGKD R+ F+ FL++EL  +G++   D+ E + G  +  DL   IE SK  +
Sbjct: 14  KFDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAV 73

Query: 62  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           VI+S NY++S WCL+EL  IM+  +      +P+FY
Sbjct: 74  VIISKNYSASPWCLQELVMIMDVEKKGSIIVMPIFY 109

[Close]

BLAST of CmoCh10G011820 vs. TAIR 10
Match: AT1G72910.1 (Toll-Interleukin-Resistance (TIR) domain-containing protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 2   KYDVFISFRGKDVRKNFVGFLHQELERLGLKALVDEKEFKIGEDL-FDLFKIIEESKFVI 61
           KYDVF+SFRG D R+NF+ FL++EL R  ++   D+KE + G+ +  +L + IE S+F +
Sbjct: 8   KYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAV 67

Query: 62  VILSNNYASSKWCLRELTKIMESMEMAQARALPVFY 97
           V++S  YA+S WCL EL  IM+  +      +P+FY
Sbjct: 68  VVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFY 103

The following BLAST results are available for this feature:

BLAST of CmoCh10G011820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A290U7C4	5.5e-19	50.53	Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV...	[more]
Q40392	4.7e-18	47.37	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1	[more]
Q9SZ66	1.8e-17	44.79	Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=...	[more]
Q9SSN3	3.0e-17	44.79	Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana OX=3702 GN=TIR ...	[more]
O48573	9.7e-16	46.81	Disease resistance protein LAZ5 OS=Arabidopsis thaliana OX=3702 GN=LAZ5 PE=1 SV=...	[more]

BLAST of CmoCh10G011820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBR4	1.2e-45	100.00	toll/interleukin-1 receptor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HAB0	3.9e-44	96.91	toll/interleukin-1 receptor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S4E362	8.8e-28	59.46	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498648 PE=4 SV=1	[more]
A0A5A7T7V5	8.8e-28	59.46	TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0KXU0	8.8e-28	59.46	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647530 PE=4 SV...	[more]

BLAST of CmoCh10G011820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72950.1	1.8e-20	45.83	Disease resistance protein (TIR-NBS class)	[more]
AT1G72920.1	3.9e-20	47.92	Toll-Interleukin-Resistance (TIR) domain family protein	[more]
AT1G72940.1	1.1e-19	46.88	Toll-Interleukin-Resistance (TIR) domain-containing protein	[more]
AT1G17615.1	9.6e-19	43.75	Disease resistance protein (TIR-NBS class)	[more]
AT1G72910.1	1.3e-18	43.75	Toll-Interleukin-Resistance (TIR) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	SMART	SM00255	till_3	coord: 2..116 e-value: 1.0E-18 score: 78.2
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 2..99 e-value: 6.5E-27 score: 94.5
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROSITE	PS50104	TIR	coord: 1..117 score: 27.392668
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	GENE3D	3.40.50.10140		coord: 1..110 e-value: 1.2E-35 score: 124.7
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	SUPERFAMILY	52200	Toll/Interleukin receptor TIR domain	coord: 2..98
None	No IPR available	PANTHER	PTHR32009:SF84	TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN	coord: 2..97
None	No IPR available	PANTHER	PTHR32009	TMV RESISTANCE PROTEIN N-LIKE	coord: 2..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011820.1	CmoCh10G011820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0003953	NAD+ nucleosidase activity