CmoCh10G011790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr10: 10606131 .. 10613686 (-)
RNA-Seq Expression	CmoCh10G011790
Synteny	CmoCh10G011790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATTTTGGGAGGGAAGAATTGGAGACGGCTTCACTTCAAGCATATCTAATAGGAATGGAAAGAGATAGAAAAGTTATCGGTAAGTTATATCTCCTTTTTCTTTTATCTTTTGACAGAGATAGAAAAGTTATCTTGATATTTTTTTCAATTATTTAGATTTTTAGATATCTGATTGAAAATCAAAATTGAAAAGTTATCTTAGATCTCTCTTTTAATTATTTATTGGATATCGAATAGAAAATCAAAATTAATTGAAAATAGCTTTGTGAATTGCATCTAAATGTAATCATCATTTTTAGGAAAGAGAAGAAAACAGACTAGATTGAAAAAGGAAAGAGAAGAAAACAGAATAGATTTAAAATGTCTTCCGTTAATGATAATAGTTTTTAGGCAAGGGAAGAAAAAAAAAATTGAAAATGGCTTCTGTTAATTGATAGTCAATAATGTGGAAGAAGAAAACATAATTGATTGAATATTGTTTTATAATTGCATAGTCATTTATATGAAAAAGAAGACAGAGAGAATAGAAATAAAGTGGTACAATAGAGAGAAGATGTAACGACTCGGGAAAGAAAAAAAAAATATATATATATATATAAAATAAATAAATAAATGAAAACGAAAAAAAAAAAAAAAAAAAAACCAGTCGCCGGAAAACCCGCGAGTTTTCCGGCGACCGCCGAGTTTCGCGGAACCCACGCGAAACGACGCCCACAGCACGCCCACCCTCAGCCCAGCATCTTCAGAACACCTGCAAAGGGAGAAAAGAGAGAAAATTTCGAGAGAGAGAGAGAGATTTTGGACAAACGTCGGCGAGTGTCCAGTTTCTCCGACGAGCCCTCAAACCACCCTTAAACCGACCCCAAACGACCTGTTACTACCATAAGAGAGATCCCTAACGAAAGCACAATAACTTAGGGTGCGTTTTGTGTTATTTCGTAAGCGTCGTCGTCGGTAACCGAGGTCGGAAAATTAGGTTTCTTAATCGATTCTTAGATCTATGGCTTTTAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGGAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAGCTCGCCGGAAAATCGGCCAAAGTCAGGTAAGGAAGACAAGATCCACGGATCCGGGTCAACCCGAACCCAGAACCCGGGAGAGCCAGCCCGTTCCTCCCTTGGCCTCTGCCTTCGGCCCAGCCCAACTACAGCGGCCCAAACCTCAAACAGGCTCAGAAGCTACGGTTCAGTTGAACCAACCCAGACTAGACCCACGGTCCAATTGAGCCGGCCTGCAAACCAAACACTTGCGGCCCAGCCCAGTAAGCCGAGGCCCAACGTTTAGCCTTGGCCCAGTAGCCTTCCACAGCCCGCGACCCAAACCACGACCCGAACCGGACTGCGACCCACGCTTCGACCCGACACTACTGCTCGACGTGGCTTTCTCTGCTGCTGCCACGTGTCACACAGCGGCGCGGCAGTCCCTCGGCTCGGCTCGGCGCAAACGGCTCGGGCTCCCTCCGGTGACGCTCCGGTGGCTCTAGCGGCTGTTCGGCTCGGCTCACCTATTTTCAGCCCGGTTTCCACTGTTTCGACCCTCTCGGATCTGTTTTCGGCCCCGATTAAGGTATCCGAGGTCGTTTTAGAGCCGTATTTCACATTTATTAAATTATAGGTAAATTAATTATGAAATACTAACGGAAAGTGGTGAACGGTGTGATAGGAAACAAACCCCGGCGACGTAGGAAGCAGCTCTCACGGAACAGGAGCTTACGTTTAGCTATTTAGGGAATACTTCGGCCAAGGCCAACCAAGTAAGTAGCCTTACTATAGGATAGGCTAAATAAATTATATGATACTTGATGATATGTTTGACGCACGTTGTGGCATTATGATGAGCATGATGATTGCATGATTTTTACCTTAATATGATGATGTGTTCCATATTGAGCATGCTAGATGATGATGAGTGCCATATTGCATCATGACGTTAGATCGACGTAGGACACAACCCTAAGAGCATGAAAATGATATTAATATAAATATCCACGGCGTTACCTAGAGTAACAAAGAGATGAGACTAGAGGGTTGTGTCAGAAGAGACATTACGATGGATTTAGAGGGACCTCATGCATTTTGTATGTTCATAAGCATAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCTTATGATGAGCGCGAATGCGCACAGGTGCGAAAGCACACAGATGAGGGTATTCATGAGGCGCATGACACTATGGGGTTCCGCTGACCTCTGGACGTCGCTACAGATTAGCTTGACCAGAGGGTCCAGGGGGTGTGCGAGCACCCTGGAGACTCACACTCGCACGTGTGAGTCGTGTGTAGGGAAGTACTACACATCCAATTTGTCCGAGACTGGAGGCCACCCCTAAGATGATTAGAGATAGGTCCCTATTCATGATTGCATGTGTTTGCATTAGCATTGCCCCTATAGTGGGGTCACTTACTGAGTATTTCTGCCATGTGCCATATTGTTTTTCAGGTAAAGGCAAGGCTCCCATGTACGGTTGACGGTGGCATCGTGATCAGAGACTGTGGCGCGTGTATAGGATAGTTGCATATTTAATTCCTAGTCTTGGTTAGGATAGAGCGTTTGCATTTCATTCATTTATATTAATTAATTTGTAATCGTTTTATTTTATCTTTTTGAACTCCAGCACGATGTTTGAAACACATAAGTCCGGCAGTGTTTTCCAATGTTTTAATGTATTCTGAAGTTTTAAATTTTTCCGCTAATAAAGATGAGCATGCTTAGGTTTTATTCTGCATTAGAGATGAGCATGAGACGTTAGTGGCGACTCTAGATATGTGAAAATTTAGGGTCGTTACAGTTGGTATCAGAGCTCTAGGTTATAGATTCTGTAGACTAGCCTATGATGTAGGCTTGACACGCTCCACGGTCCCAACGTCGATGCCCGTCACCGTCAGGTACGCCTTGCATGAGATAAGAAAAGAGAAACGTTTTAAAACTCGCATGCATTTTTTTTTATGTTGACATTACTGAAATGGTTGTGATATTTCACGTATTTATTTAAGAGTATGACGTCATGTGTTGCATGCTGAGTAATTTTGTTAATAGCATGATATGATGCTTAGCATGATGAATGTTTACTTCTTTGGCGTTACAATGTATTGTATAGTGTGCGTATTGTTATATATATATATATATATGTATGCATAGTATTAAGGCCTTAGACTTAAGCAATCTTATATTGGTTTATAGAACCATGCCCGGAGGACGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGACGAGGAAGGGGGCGACCCCGTCGTAGAGAAGTAGGATGAGGTGTGGCAGTAGAGGGCCCACCTCAAGAAAGATTAGAGACTGGGCCGGTAACAGTTACGCCGCCCCCAGTCTTACCACCAGTTGAGCTACCTCCTCTAGCTCCACTACAAGCTGAGCCTCCACCACAAGTAGAACCTCTACCCTAGCCTACCCTACCACTCCAAGTCACACCTGAAGCTGCACCCCCAGTGGGTGGAGTAGATGCTAATACTAGGTTAATGTGTGACTCCATCCAAGCCCTAATTCAAACCTTGGTAACCAATCAGCAAGCCAATCTACAATAGGCCCAGAAACAAGCCCAAGCACAGGCCCAGGCACTGGCACAGGTACAGGCACAGGTACAGGCACAGGCACAGGCCACTGCTCAGGCCAATGCCCCAATAAACCCTCCACAACCTGTTAGATGTTCAAACTGGATAAGGGATTTCAAGAGATACGACCCTCGACCATTCACTGGTTCCCTGGTAGACCCCATAGAAGCCCAAATGTGGATTGTAGTGGTGGAAACCACCTTTGAGACTATGGAGTGCCCAGAGAACCAAAAGGTCGCCTGTGCAACCTTCGTCCTACAAAAGGACGCAGAGATATGGTGGAGAGATAACAAAACCCTCCTTAACCCAGAAGGGGGACCAATGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATATTATCTTAAGTCAGAGCGACTTAAAAGGCAGCAGGAGTTCACCCACCTAGTACAGGGAGGACTCACAGTGGAGAAGTACAACAGAGAGTTTAATAAACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTGTATTGGGTTTGGAACCAAGAATCCGCCGCATGTTGGAGGCGTTCAACCCAAAGACCTATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATGAGAAACGATGTGAAGAGCCAGTTATAATTGGGCAGAAGCGTCATGAATTAGGAGGCTCTGACCGTCCACCACTAGCACGTAGGCACCGTTCCAATAACAGACCCGCTCCTAGATGGGATGATCGACGCCCTCCCCGACATACTGACAGGAACCCCAGGAATCAAGATGGGGCCAGAGGGAGGAGAGAGGAAGGGTGCACTATCTGTGGAAGACTACATGGTGGGAGGTGCATGGCTGGCAGCCGAGCGTGTTATAGATGTGGTCAAGAGGGGCACATCGCCGTGAACTGCACGGTCGGAAATGCTGCAGCACAAGCAAACCCACCCAGAGTAGTAGAGCAAATGGATCAACCAGCACCACTGCGAGCTCAAGCTAGGGCATACGCGTCAACCAGCAAGGACACTGGGAGGTCCGACGCCGTGGTGACAGGTACACTATCCATTTTAGGTCATTTCGCTTTTACCTTATTTGATTCTGGTTCCACGCATTCCTTTATTTCCATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTGCGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGACAAGTAATCATAGGGAACCAAACTTTAAGCGTTGACCTGATGGTGGTAAACATGACAGATTTCGACATCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGTCGCAAAAAGGAAGTAAAATTTTCACCACCGATAGGACCTACCTTTAAATTTAAAGGCACAAATACCGGGATTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAGAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGCTGTAGACGTGAGAGGAAAGAAAGAGACCCTAGTAAACGTGCCAATAGTAAACGAGTTCCCGGATGTATTTCCGAATGACTTACCTGGAATACCCCCTTCCCGAGCGGTCGACTTCGTCATCGAACTCGAGCCGGAAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAGCAGAGTTGAAGGAACTCAAGGCGCAACTGCAAGACTTACTAGATAAAGGATTCATTCGACCTAGCGTGTCCCCCTGGGGTGCGCCAGTGTTGTTTGTTAAGAAGAAAGATGCATCGATGCGTCTGTGCATCGATTACAGAGAGCTAAACAAGAGAACCATAAAAAACAAATATCCTCTGCCTAGAATAGAAGATTTGTTTGATCAACTCAGAGAAGCAACAGTATTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAAAAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTGGTGATGTCATTTGGCCTCACCAATGCCCCAGCTGTATTTATGGAGTTAATGAACCGGGTATTCAAAGAATGCCTAGACATGTTTGTGATTGTGTTCATTGATGACATCCTCATATACTCGAGAACCGACCTAGAGCACGAGGAACACCTCCGAAAAGTCCTAACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGTGAATTTTGGTTACGACAAGTCTCTTTCCTAGGACACGTGGTGTCAAAGGACGGAATATCTGTAGATCCCACCAAGGTCGAAGCGATTACAAAGTGGGAACGCCCAACTACGGTAACGGAAGTAAGGAGTTTCCTAGGGTTGGCGGGATATTATCGGAGGTTCGTATAGGACTTCGCTAAAATATCCTCGCCTTTAACAAAGTTAACAAAAAAAGGGGTGCCATTTAGATGGGATGATGCTTGTGAGGCAAGCTTCCAGAACCTAAAAGAGAGATTGGTAACCGCCCCAGTGCTCATAGTACCCGAGAGCTCAGAAGGATATGTGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGCAAGGTTGTCGCATATGCATCTCGTCAACTTAAAGAATATGAAAAGAACTACCATACCCATGACCTAGAGTTGGCCGCTGTAGTGTTCGCACTGAAAATCTGGCGACATTACCTGTATGGCGAGAAAACCCAAATTTTTACCAACCACAAAAGTTTGAAATACTTCTTCACCCAGAAAGAGTTAAACATGAGGCAGAGAAGGTGGTTAGAATTGGTGAAGGATTATGACGTAGATATCTAGTACCACCCTAAGAAAGCAAATGTGGTTGCAGATGCCTTGAGTAGGAAGACGGTCCACTCGTCGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGAGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCATAGCACAGCTGGCCCGACTCACGGTACAACCTACGCTTAGGCAGAGAATTATTGCCTCCCAACGAGAGGATCCTAACCTACAGAAAGTCCTAGGACAACTAGACGAAAGTCCAGTAGATGGATTCTCAAAGTCATCAGATGAAGAACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAAGTACTGATGGAAGCTCACAACTCACCATTTGCGATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAGACGGCAGGGTTGTTGCAGCCCCTAAGCATACCGAAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTAGGAAGGTTACATATACAGTTGACGATTGGGCAAAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCTTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCGTTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACATCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTAG

mRNA sequence

ATGACAAATTTTGGGAGGGAAGAATTGGAGACGGCTTCACTTCAAGCATATCTAATAGGAATGGAAAGAGATAGAAAAGTTATCGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGGAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAGCTCGCCGGAAAATCGGCCAAAGTCAGCCCGCGACCCAAACCACGACCCGAACCGGACTGCGACCCACGCTTCGACCCGACACTACTGCTCGACGTGGCTTTCTCTGCTGCTGCCACGTGTCACACAGCGGCGCGGCAGTCCCTCGGCTCGGCTCGGCGCAAACGGCTCGGGCTCCCTCCGGTGACGCTCCGGTGGCTCTAGCGGCTGTTCGGCTCGGCTCACCTATTTTCAGCCCGGTTTCCACTGTTTCGACCCTCTCGGATCTGTTTTCGGCCCCGATTAAGGCCCAGAAACAAGCCCAAGCACAGGCCCAGGCACTGGCACAGGTACAGGCACAGGTACAGGCACAGGCACAGGCCACTGCTCAGGCCAATGCCCCAATAAACCCTCCACAACCTGTTAGATGTTCAAACTGGATAAGGGATTTCAAGAGATACGACCCTCGACCATTCACTGGTTCCCTGGTAGACCCCATAGAAGCCCAAATGTGGATTGTAGTGGTGGAAACCACCTTTGAGACTATGGAGTGCCCAGAGAACCAAAAGGTCGCCTGTGCAACCTTCGTCCTACAAAAGGACGCAGAGATATGGTGGAGAGATAACAAAACCCTCCTTAACCCAGAAGGGGGACCAATGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATATTATCTTAAGTCAGAGCGACTTAAAAGGCAGCAGGAGTTCACCCACCTAGTACAGGGAGGACTCACAGTGGAGAAGTACAACAGAGAGTTTAATAAACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTGTATTGGGTTTGGAACCAAGAATCCGCCGCATGTTGGAGGCGTTCAACCCAAAGACCTATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATGAGAAACGATGTGAAGAGCCAGTTATAATTGGGCAGAAGCGTCATGAATTAGGAGGCTCTGACCGTCCACCACTAGCACGTAGGCACCGTTCCAATAACAGACCCGCTCCTAGATGGGATGATCGACGCCCTCCCCGACATACTGACAGGAACCCCAGGAATCAAGATGGGGCCAGAGGGAGGAGAGAGGAAGGGTGCACTATCTGTGGAAGACTACATGGTGGGAGGTGCATGGCTGGCAGCCGAGCGTGTTATAGATGTGGTCAAGAGGGGCACATCGCCGTGAACTGCACGGTCGGAAATGCTGCAGCACAAGCAAACCCACCCAGAGTAGTAGAGCAAATGGATCAACCAGCACCACTGCGAGCTCAAGCTAGGGCATACGCGTCAACCAGCAAGGACACTGGGAGGTCCGACGCCGTGGTGACAGGTACACTATCCATTTTAGGTCATTTCGCTTTTACCTTATTTGATTCTGGTTCCACGCATTCCTTTATTTCCATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTGCGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGACAAGTAATCATAGGGAACCAAACTTTAAGCGTTGACCTGATGGTGGTAAACATGACAGATTTCGACATCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGTCGCAAAAAGGAAGTAAAATTTTCACCACCGATAGGACCTACCTTTAAATTTAAAGGCACAAATACCGGGATTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAGAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGCTGTAGACGTGAGAGGAAAGAAAGAGACCCTAGTAAACGTGCCAATAGTAAACGAGTTCCCGGATGTATTTCCGAATGACTTACCTGGAATACCCCCTTCCCGAGCGGTCGACTTCGTCATCGAACTCGAGCCGGAAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAGCAGAGTTGAAGGAACTCAAGGCGCAACTGCAAGACTTACTAGATAAAGGATTCATTCGACCTAGCGTGTCCCCCTGGGGTGCGCCAGTGTTGTTTGTTAAGAAGAAAGATGCATCGATGCGTCTGTGCATCGATTACAGAGAGCTAAACAAGAGAACCATAAAAAACAAATATCCTCTGCCTAGAATAGAAGATTTGTTTGATCAACTCAGAGAAGCAACAGTATTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAAAAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTGGTGATGTCATTTGGCCTCACCAATGCCCCAGCTGTATTTATGGAGTTAATGAACCGGGTATTCAAAGAATGCCTAGACATGTTTGTGATTGTGTTCATTGATGACATCCTCATATACTCGAGAACCGACCTAGAGCACGAGGAACACCTCCGAAAAGTCCTAACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGTGAATTTTGGTTACGACAAGTCTCTTTCCTAGGACACGTGGTGTCAAAGGACGGAATATCTGTAGATCCCACCAAGGTCGAAGCGATTACAAAGTGGGAACGCCCAACTACGTTAACAAAAAAAGGGGTGCCATTTAGATGGGATGATGCTTGTGAGGCAAGCTTCCAGAACCTAAAAGAGAGATTGGTAACCGCCCCAGTGCTCATAGTACCCGAGAGCTCAGAAGGATATGTGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGCAAGGTTGTCGCATATGCATCTCGTCAACTTAAAGAATATGAAAAGAACTACCATACCCATGACCTAGAGTTGGCCGCTGTAGTGTTCGCACTGAAAATCTGGCGACATTACCTGTATGGCGAGAAAACCCAAATTTTTACCAACCACAAAAGTTTGAAATACTTCTTCACCCAGAAAGAGTTAAACATGAGGCAGAGAAGGTGGAAGACGGTCCACTCGTCGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGAGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCATAGCACAGCTGGCCCGACTCACGGTACAACCTACGCTTAGGCAGAGAATTATTGCCTCCCAACGAGAGGATCCTAACCTACAGAAAGTCCTAGGACAACTAGACGAAAGTCCAGTAGATGGATTCTCAAAGTCATCAGATGAAGAACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAAGTACTGATGGAAGCTCACAACTCACCATTTGCGATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAGACGGCAGGGTTGTTGCAGCCCCTAAGCATACCGAAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTAGGAAGGTTACATATACAGTTGACGATTGGGCAAAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCTTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCGTTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACATCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTAG

Coding sequence (CDS)

ATGACAAATTTTGGGAGGGAAGAATTGGAGACGGCTTCACTTCAAGCATATCTAATAGGAATGGAAAGAGATAGAAAAGTTATCGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGGAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAGCTCGCCGGAAAATCGGCCAAAGTCAGCCCGCGACCCAAACCACGACCCGAACCGGACTGCGACCCACGCTTCGACCCGACACTACTGCTCGACGTGGCTTTCTCTGCTGCTGCCACGTGTCACACAGCGGCGCGGCAGTCCCTCGGCTCGGCTCGGCGCAAACGGCTCGGGCTCCCTCCGGTGACGCTCCGGTGGCTCTAGCGGCTGTTCGGCTCGGCTCACCTATTTTCAGCCCGGTTTCCACTGTTTCGACCCTCTCGGATCTGTTTTCGGCCCCGATTAAGGCCCAGAAACAAGCCCAAGCACAGGCCCAGGCACTGGCACAGGTACAGGCACAGGTACAGGCACAGGCACAGGCCACTGCTCAGGCCAATGCCCCAATAAACCCTCCACAACCTGTTAGATGTTCAAACTGGATAAGGGATTTCAAGAGATACGACCCTCGACCATTCACTGGTTCCCTGGTAGACCCCATAGAAGCCCAAATGTGGATTGTAGTGGTGGAAACCACCTTTGAGACTATGGAGTGCCCAGAGAACCAAAAGGTCGCCTGTGCAACCTTCGTCCTACAAAAGGACGCAGAGATATGGTGGAGAGATAACAAAACCCTCCTTAACCCAGAAGGGGGACCAATGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATATTATCTTAAGTCAGAGCGACTTAAAAGGCAGCAGGAGTTCACCCACCTAGTACAGGGAGGACTCACAGTGGAGAAGTACAACAGAGAGTTTAATAAACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTGTATTGGGTTTGGAACCAAGAATCCGCCGCATGTTGGAGGCGTTCAACCCAAAGACCTATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATGAGAAACGATGTGAAGAGCCAGTTATAATTGGGCAGAAGCGTCATGAATTAGGAGGCTCTGACCGTCCACCACTAGCACGTAGGCACCGTTCCAATAACAGACCCGCTCCTAGATGGGATGATCGACGCCCTCCCCGACATACTGACAGGAACCCCAGGAATCAAGATGGGGCCAGAGGGAGGAGAGAGGAAGGGTGCACTATCTGTGGAAGACTACATGGTGGGAGGTGCATGGCTGGCAGCCGAGCGTGTTATAGATGTGGTCAAGAGGGGCACATCGCCGTGAACTGCACGGTCGGAAATGCTGCAGCACAAGCAAACCCACCCAGAGTAGTAGAGCAAATGGATCAACCAGCACCACTGCGAGCTCAAGCTAGGGCATACGCGTCAACCAGCAAGGACACTGGGAGGTCCGACGCCGTGGTGACAGGTACACTATCCATTTTAGGTCATTTCGCTTTTACCTTATTTGATTCTGGTTCCACGCATTCCTTTATTTCCATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTGCGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGACAAGTAATCATAGGGAACCAAACTTTAAGCGTTGACCTGATGGTGGTAAACATGACAGATTTCGACATCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGTCGCAAAAAGGAAGTAAAATTTTCACCACCGATAGGACCTACCTTTAAATTTAAAGGCACAAATACCGGGATTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAGAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGCTGTAGACGTGAGAGGAAAGAAAGAGACCCTAGTAAACGTGCCAATAGTAAACGAGTTCCCGGATGTATTTCCGAATGACTTACCTGGAATACCCCCTTCCCGAGCGGTCGACTTCGTCATCGAACTCGAGCCGGAAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAGCAGAGTTGAAGGAACTCAAGGCGCAACTGCAAGACTTACTAGATAAAGGATTCATTCGACCTAGCGTGTCCCCCTGGGGTGCGCCAGTGTTGTTTGTTAAGAAGAAAGATGCATCGATGCGTCTGTGCATCGATTACAGAGAGCTAAACAAGAGAACCATAAAAAACAAATATCCTCTGCCTAGAATAGAAGATTTGTTTGATCAACTCAGAGAAGCAACAGTATTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAAAAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTGGTGATGTCATTTGGCCTCACCAATGCCCCAGCTGTATTTATGGAGTTAATGAACCGGGTATTCAAAGAATGCCTAGACATGTTTGTGATTGTGTTCATTGATGACATCCTCATATACTCGAGAACCGACCTAGAGCACGAGGAACACCTCCGAAAAGTCCTAACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGTGAATTTTGGTTACGACAAGTCTCTTTCCTAGGACACGTGGTGTCAAAGGACGGAATATCTGTAGATCCCACCAAGGTCGAAGCGATTACAAAGTGGGAACGCCCAACTACGTTAACAAAAAAAGGGGTGCCATTTAGATGGGATGATGCTTGTGAGGCAAGCTTCCAGAACCTAAAAGAGAGATTGGTAACCGCCCCAGTGCTCATAGTACCCGAGAGCTCAGAAGGATATGTGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGCAAGGTTGTCGCATATGCATCTCGTCAACTTAAAGAATATGAAAAGAACTACCATACCCATGACCTAGAGTTGGCCGCTGTAGTGTTCGCACTGAAAATCTGGCGACATTACCTGTATGGCGAGAAAACCCAAATTTTTACCAACCACAAAAGTTTGAAATACTTCTTCACCCAGAAAGAGTTAAACATGAGGCAGAGAAGGTGGAAGACGGTCCACTCGTCGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGAGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCATAGCACAGCTGGCCCGACTCACGGTACAACCTACGCTTAGGCAGAGAATTATTGCCTCCCAACGAGAGGATCCTAACCTACAGAAAGTCCTAGGACAACTAGACGAAAGTCCAGTAGATGGATTCTCAAAGTCATCAGATGAAGAACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAAGTACTGATGGAAGCTCACAACTCACCATTTGCGATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAGACGGCAGGGTTGTTGCAGCCCCTAAGCATACCGAAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTAGGAAGGTTACATATACAGTTGACGATTGGGCAAAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCTTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCGTTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACATCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTAG

Protein sequence

MTNFGREELETASLQAYLIGMERDRKVIGRKTPKKERRTTNKEEKGRKRTEIGNGNAAGRREKARRKIGQSQPATQTTTRTGLRPTLRPDTTARRGFLCCCHVSHSGAAVPRLGSAQTARAPSGDAPVALAAVRLGSPIFSPVSTVSTLSDLFSAPIKAQKQAQAQAQALAQVQAQVQAQAQATAQANAPINPPQPVRCSNWIRDFKRYDPRPFTGSLVDPIEAQMWIVVVETTFETMECPENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPMNWERFKEAFLKEYYLKSERLKRQQEFTHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEKMTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRCEEPVIIGQKRHELGGSDRPPLARRHRSNNRPAPRWDDRRPPRHTDRNPRNQDGARGRREEGCTICGRLHGGRCMAGSRACYRCGQEGHIAVNCTVGNAAAQANPPRVVEQMDQPAPLRAQARAYASTSKDTGRSDAVVTGTLSILGHFAFTLFDSGSTHSFISMPFVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSVDLMVVNMTDFDIILGMDWLAENRASIDCRKKEVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAILACAVDVRGKKETLVNVPIVNEFPDVFPNDLPGIPPSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLLDKGFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTTLTKKGVPFRWDDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYASRQLKEYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKYFFTQKELNMRQRRWKTVHSSALITREVRVQREFERANIAVATEGVIAQLARLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLRKEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAKLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQILEDMLRACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEAL

Homology

[Close]

BLAST of CmoCh10G011790 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 376.7 bits (966), Expect = 1.1e-102
Identity = 254/775 (32.77%), Postives = 383/775 (49.42%), Query Frame = 0


Query: 673  KETLVNVPI--VNEFPDVFPNDLPGIPP---SRAVDFVIELEPETGPISKAPYRMAPAEL 732
            K+T   +P+    ++ ++  NDLP  P    +  V   IE++P        PY +     
Sbjct: 576  KDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNE 635

Query: 733  KELKAQLQDLLDKGFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRI 792
            +E+   +Q LLD  FI PS SP  +PV+ V KKD + RLC+DYR LNK TI + +PLPRI
Sbjct: 636  QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 793  EDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVF 852
            ++L  ++  A +F+ +DL SGYHQI +  KD  KTAF T  G YE+ VM FGL NAP+ F
Sbjct: 696  DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 853  MELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWL 912
               M   F++    FV V++DDILI+S +  EH +HL  VL  L+   L  K  KC+F  
Sbjct: 756  ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 913  RQVSFLGHVVSKDGISVDPTKVEAITKWERPTTLT------------KKGVP-------- 972
             +  FLG+ +    I+    K  AI  +  P T+             ++ +P        
Sbjct: 816  EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 875

Query: 973  --------FRWDDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHG 1032
                     +W +  + + + LK  L  +PVL+   +   Y + +DAS  G+G VL +  
Sbjct: 876  IQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVD 935

Query: 1033 K------VVAYASRQLKEYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKY 1092
                   VV Y S+ L+  +KNY   +LEL  ++ AL  +R+ L+G+   + T+H SL  
Sbjct: 936  NKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLS 995

Query: 1093 FFTQKELNMRQRRWKTVHSSALITREVRVQREFERANIAVATEGVIAQLARLTVQPTLRQ 1152
               + E   R +RW    ++   T E        +  +A A    I  +   T +P   +
Sbjct: 996  LQNKNEPARRVQRWLDDLATYDFTLEYLAG---PKNVVADAISRAIYTITPETSRPIDTE 1055

Query: 1153 RIIASQREDPNLQKVLGQLDE------SPVD---------------GFSKS---SDEELL 1212
               +  + DP    VL  + E      +P D                F K+    DE + 
Sbjct: 1056 SWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIY 1115

Query: 1213 YQGRLCVPAIEDLRKEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCL 1272
            YQ RL VP I+     + +   ++ F  H   T     +   ++W  ++  +  ++  C+
Sbjct: 1116 YQDRLVVP-IKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCV 1175

Query: 1273 VCQQVKAPRQKTAGLLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHF 1332
             CQ +K+ R +  GLLQPL I + +W +I+MDF+ GLP T     +I VVVDR +K AHF
Sbjct: 1176 QCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHF 1235

Query: 1333 LPRKVTYTVDDWAKLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAF 1385
            +  + T        L  + I   HG P +I SDRD R T+  ++ L K LG +   S+A 
Sbjct: 1236 IATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSAN 1295

[Close]

BLAST of CmoCh10G011790 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 375.2 bits (962), Expect = 3.3e-102
Identity = 252/775 (32.52%), Postives = 382/775 (49.29%), Query Frame = 0


Query: 673  KETLVNVPI--VNEFPDVFPNDLPGIPP---SRAVDFVIELEPETGPISKAPYRMAPAEL 732
            K+T   +P+    ++ ++  NDLP  P    +  V   IE++P        PY +     
Sbjct: 550  KDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNE 609

Query: 733  KELKAQLQDLLDKGFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRI 792
            +E+   +Q LLD  FI PS SP  +PV+ V KKD + RLC+DYR LNK TI + +PLPRI
Sbjct: 610  QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 793  EDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVF 852
            ++L  ++  A +F+ +DL SGYHQI +  KD  KTAF T  G YE+ VM FGL NAP+ F
Sbjct: 670  DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 853  MELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWL 912
               M   F++    FV V++DDILI+S +  EH +HL  VL  L+   L  K  KC+F  
Sbjct: 730  ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 913  RQVSFLGHVVSKDGISVDPTKVEAITKWERPTTLT------------KKGVP-------- 972
             +  FLG+ +    I+    K  AI  +  P T+             ++ +P        
Sbjct: 790  EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 849

Query: 973  --------FRWDDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHG 1032
                     +W +  + +   LK+ L  +PVL+   +   Y + +DAS  G+G VL +  
Sbjct: 850  IQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVD 909

Query: 1033 K------VVAYASRQLKEYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKY 1092
                   VV Y S+ L+  +KNY   +LEL  ++ AL  +R+ L+G+   + T+H SL  
Sbjct: 910  NKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLS 969

Query: 1093 FFTQKELNMRQRRWKTVHSSALITREVRVQREFERANIAVATEGVIAQLARLTVQPTLRQ 1152
               + E   R +RW    ++   T E        +  +A A    +  +   T +P   +
Sbjct: 970  LQNKNEPARRVQRWLDDLATYDFTLEYLAG---PKNVVADAISRAVYTITPETSRPIDTE 1029

Query: 1153 RIIASQREDPNLQKVLGQLDE------SPVD---------------GFSKS---SDEELL 1212
               +  + DP    VL  + E      +P D                F K+    DE + 
Sbjct: 1030 SWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIY 1089

Query: 1213 YQGRLCVPAIEDLRKEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCL 1272
            YQ RL VP I+     + +   ++ F  H   T     +   ++W  ++  +  ++  C+
Sbjct: 1090 YQDRLVVP-IKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCV 1149

Query: 1273 VCQQVKAPRQKTAGLLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHF 1332
             CQ +K+ R +  GLLQPL I + +W +I+MDF+ GLP T     +I VVVDR +K AHF
Sbjct: 1150 QCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHF 1209

Query: 1333 LPRKVTYTVDDWAKLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAF 1385
            +  + T        L  + I   HG P +I SDRD R T+  ++ L K LG +   S+A 
Sbjct: 1210 IATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSAN 1269

[Close]

BLAST of CmoCh10G011790 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 3.5e-96
Identity = 215/761 (28.25%), Postives = 375/761 (49.28%), Query Frame = 0


Query: 681  IVNEFPDV-FPNDLPGIP-PSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLL 740
            I  EF D+    +   +P P + ++F +EL  E   +    Y + P +++ +  ++   L
Sbjct: 377  IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 741  DKGFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREAT 800
              G IR S +    PV+FV KK+ ++R+ +DY+ LNK    N YPLP IE L  +++ +T
Sbjct: 437  KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 801  VFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKEC 860
            +F+K+DL+S YH IR+ + D  K AFR   G +E++VM +G++ APA F   +N +  E 
Sbjct: 497  IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 861  LDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVS 920
             +  V+ ++DDILI+S+++ EH +H++ VL  L+   L    +KCEF   QV F+G+ +S
Sbjct: 557  KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHIS 616

Query: 921  KDGISVDPTKVEAITKWERP------------------------------TTLTKKGVPF 980
            + G +     ++ + +W++P                                L KK V +
Sbjct: 617  EKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRW 676

Query: 981  RWDDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVA 1040
            +W      + +N+K+ LV+ PVL   + S+  ++ +DAS   +G VL Q         V 
Sbjct: 677  KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736

Query: 1041 YASRQLKEYEKNYHTHDLELAAVVFALKIWRHYLYG--EKTQIFTNHKSLKYFFTQKE-- 1100
            Y S ++ + + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T +   
Sbjct: 737  YYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEP 796

Query: 1101 LNMRQRRWKTV----------------HSSALITREVRVQREFERANIAVATEGVIAQLA 1160
             N R  RW+                  H +  ++R V       +     + +  I  + 
Sbjct: 797  ENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD----SEDNSINFVN 856

Query: 1161 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1220
            ++++    + +++     D  L  +L   D+   +         +  + ++ +P    L 
Sbjct: 857  QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLT 916

Query: 1221 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1280
            + ++ + H     +HP    +   + + F WK +++ +  +V  C  CQ  K+   K  G
Sbjct: 917  RTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYG 976

Query: 1281 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1340
             LQP+   +  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+
Sbjct: 977  PLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1036

Query: 1341 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1385
            ++ + ++   G P  I++D D  FTS  W+           FS  + PQTDGQTER NQ 
Sbjct: 1037 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1096

[Close]

BLAST of CmoCh10G011790 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 3.5e-96
Identity = 215/761 (28.25%), Postives = 375/761 (49.28%), Query Frame = 0


Query: 681  IVNEFPDV-FPNDLPGIP-PSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLL 740
            I  EF D+    +   +P P + ++F +EL  E   +    Y + P +++ +  ++   L
Sbjct: 377  IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 741  DKGFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREAT 800
              G IR S +    PV+FV KK+ ++R+ +DY+ LNK    N YPLP IE L  +++ +T
Sbjct: 437  KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 801  VFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKEC 860
            +F+K+DL+S YH IR+ + D  K AFR   G +E++VM +G++ APA F   +N +  E 
Sbjct: 497  IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 861  LDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVS 920
             +  V+ ++DDILI+S+++ EH +H++ VL  L+   L    +KCEF   QV F+G+ +S
Sbjct: 557  KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHIS 616

Query: 921  KDGISVDPTKVEAITKWERP------------------------------TTLTKKGVPF 980
            + G +     ++ + +W++P                                L KK V +
Sbjct: 617  EKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRW 676

Query: 981  RWDDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVA 1040
            +W      + +N+K+ LV+ PVL   + S+  ++ +DAS   +G VL Q         V 
Sbjct: 677  KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736

Query: 1041 YASRQLKEYEKNYHTHDLELAAVVFALKIWRHYLYG--EKTQIFTNHKSLKYFFTQKE-- 1100
            Y S ++ + + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T +   
Sbjct: 737  YYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEP 796

Query: 1101 LNMRQRRWKTV----------------HSSALITREVRVQREFERANIAVATEGVIAQLA 1160
             N R  RW+                  H +  ++R V       +     + +  I  + 
Sbjct: 797  ENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD----SEDNSINFVN 856

Query: 1161 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1220
            ++++    + +++     D  L  +L   D+   +         +  + ++ +P    L 
Sbjct: 857  QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLT 916

Query: 1221 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1280
            + ++ + H     +HP    +   + + F WK +++ +  +V  C  CQ  K+   K  G
Sbjct: 917  RTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYG 976

Query: 1281 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1340
             LQP+   +  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+
Sbjct: 977  PLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1036

Query: 1341 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1385
            ++ + ++   G P  I++D D  FTS  W+           FS  + PQTDGQTER NQ 
Sbjct: 1037 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1096

[Close]

BLAST of CmoCh10G011790 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 3.5e-96
Identity = 215/761 (28.25%), Postives = 375/761 (49.28%), Query Frame = 0


Query: 681  IVNEFPDV-FPNDLPGIP-PSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLL 740
            I  EF D+    +   +P P + ++F +EL  E   +    Y + P +++ +  ++   L
Sbjct: 377  IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 741  DKGFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREAT 800
              G IR S +    PV+FV KK+ ++R+ +DY+ LNK    N YPLP IE L  +++ +T
Sbjct: 437  KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 801  VFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKEC 860
            +F+K+DL+S YH IR+ + D  K AFR   G +E++VM +G++ APA F   +N +  E 
Sbjct: 497  IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 861  LDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVS 920
             +  V+ ++DDILI+S+++ EH +H++ VL  L+   L    +KCEF   QV F+G+ +S
Sbjct: 557  KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHIS 616

Query: 921  KDGISVDPTKVEAITKWERP------------------------------TTLTKKGVPF 980
            + G +     ++ + +W++P                                L KK V +
Sbjct: 617  EKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRW 676

Query: 981  RWDDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVA 1040
            +W      + +N+K+ LV+ PVL   + S+  ++ +DAS   +G VL Q         V 
Sbjct: 677  KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736

Query: 1041 YASRQLKEYEKNYHTHDLELAAVVFALKIWRHYLYG--EKTQIFTNHKSLKYFFTQKE-- 1100
            Y S ++ + + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T +   
Sbjct: 737  YYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEP 796

Query: 1101 LNMRQRRWKTV----------------HSSALITREVRVQREFERANIAVATEGVIAQLA 1160
             N R  RW+                  H +  ++R V       +     + +  I  + 
Sbjct: 797  ENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD----SEDNSINFVN 856

Query: 1161 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1220
            ++++    + +++     D  L  +L   D+   +         +  + ++ +P    L 
Sbjct: 857  QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLT 916

Query: 1221 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1280
            + ++ + H     +HP    +   + + F WK +++ +  +V  C  CQ  K+   K  G
Sbjct: 917  RTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYG 976

Query: 1281 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1340
             LQP+   +  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+
Sbjct: 977  PLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1036

Query: 1341 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1385
            ++ + ++   G P  I++D D  FTS  W+           FS  + PQTDGQTER NQ 
Sbjct: 1037 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1096

[Close]

BLAST of CmoCh10G011790 vs. ExPASy TrEMBL
Match: A0A6J1EYH9 (Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111440131 PE=4 SV=1)

HSP 1 Score: 1624.4 bits (4205), Expect = 0.0e+00
Identity = 915/1665 (54.95%), Postives = 1014/1665 (60.90%), Query Frame = 0


Query: 159  AQKQAQAQAQALAQVQAQVQAQAQATAQANAPINPPQPVRCSNWIRDFKRYDPRPFTGSL 218
            A   A   A  +A   A   A     A A  P+N P P R +NW++DF+RY+PRPF GS 
Sbjct: 6    ANAMATQPANYVATQPANAVAPQPVDAVAIPPVNNPHPDRGANWLKDFRRYNPRPFVGSK 65

Query: 219  VDPIEAQMWIVVVETTFETMECPENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPMNWE 278
             DP  AQMWI  +ETTFE+M CP+  KV CAT+VLQKDAE+WW DNK  +NP GG   WE
Sbjct: 66   EDPTAAQMWIANMETTFESMRCPDEHKVTCATYVLQKDAEVWWSDNKQSINPGGGITTWE 125

Query: 279  RFKEAFLKEYYLKSERLKRQQEFTHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEKMTEK 338
             FKEAFLK YY K  R+K+QQEF  L QG  TV++Y+++F +L+RFAPS+ DTEEK TEK
Sbjct: 126  TFKEAFLKYYYPKEIRIKKQQEFNLLTQGDRTVDQYDQDFMRLRRFAPSLADTEEKQTEK 185

Query: 339  FVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRCEEPVIIGQKRH-ELGGSDRP 398
            FVLGL P+ RRMLEAFNPKTYEEALRTAKALE+P +EK+ E  V IG+KR  E+   +  
Sbjct: 186  FVLGLNPKTRRMLEAFNPKTYEEALRTAKALEEPPEEKKTEPTVAIGRKRPVEVDTIEFQ 245

Query: 399  PLARRHRSNNR-PAPRWDDRRPP--RHTDRNPRNQDGARGRREEGCTICGRLHGGRCMAG 458
            P ++R R  +R PAP      PP  R+               +  C  CG+ H GRC+AG
Sbjct: 246  PPSQRPRYQSRPPAP------PPIGRYL-----------AMEKPLCRNCGKQHVGRCLAG 305

Query: 459  SRACYRCGQEGHIAVNCTVGNAAAQANP---PRVVEQMDQPAPLRAQARAYASTSKDTGR 518
            S  CY CG  GH+A  C   +      P   P + E   Q +P   Q +AY +TS + G 
Sbjct: 306  SGMCYICGHAGHVARTCPTKSPGIPREPLRGPVIREPTLQTSP---QTKAYVTTSNEAGT 365

Query: 519  SDAVVTGTLSILGHFAFTLFDSGSTHSFISMPFVVQAGFELEPLLHEMSVSTPAGVDLVS 578
            S  VVTGTLSILGHFA TLFDSGSTHSF++ PF+ QAGF +EPL+H +SV TPAGVDLV+
Sbjct: 366  SGTVVTGTLSILGHFALTLFDSGSTHSFVASPFIKQAGFVIEPLMHALSVGTPAGVDLVT 425

Query: 579  RDRVKDGQVIIGNQTLSVDLMVVNMTDFDIILGMDWLAENRASIDCRKKEVKFSPPIGPT 638
            +DRV+DGQV+I  QT+ VDL VV+MTDFD+ILGMDWLAEN A+IDC KKEV F+PP G T
Sbjct: 426  KDRVRDGQVVIAGQTIHVDLKVVDMTDFDVILGMDWLAENFATIDCHKKEVIFTPPNGLT 485

Query: 639  FKFKGTNTGITPKVVSMMKAKRLVQQGGWAILACAVDVRGKKETLVNVPIVNEFPDVFPN 698
            FKFKGT+TG TPK++SMMKA+RL+QQGGWA LA AV+ +GK++ +  +P+VNEF DVFP 
Sbjct: 486  FKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDTIPVVNEFMDVFPE 545

Query: 699  DLPGIPPSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLLDKGFIRPSVSPWG 758
            DLPGIPPSR VDF I+LE  TGPISKAPYRMAPAELKELK QLQDLLD            
Sbjct: 546  DLPGIPPSREVDFGIDLELGTGPISKAPYRMAPAELKELKTQLQDLLD------------ 605

Query: 759  APVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREATVFSKIDLRSGYHQ 818
                    KD SMRLCI YRELNKRT+KNKYPLPRIEDLFDQLR ATVFSKIDLRSGYHQ
Sbjct: 606  --------KDDSMRLCIGYRELNKRTVKNKYPLPRIEDLFDQLRGATVFSKIDLRSGYHQ 665

Query: 819  IRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLDMFVIVFIDDIL 878
            I+I  +D+PKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLD+FVIVFIDDIL
Sbjct: 666  IKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLDLFVIVFIDDIL 725

Query: 879  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVSKDGISVDPTKVEA 938
            IYS+TDL+H+EHLRK LT LRE+KLYA F+KCEFW+ QVSFLGH+VSKDGI VDP K+EA
Sbjct: 726  IYSKTDLKHQEHLRKALTILRENKLYANFTKCEFWIXQVSFLGHIVSKDGIFVDPNKIEA 785

Query: 939  ITKWERPTT------------------------------LTKKGVPFRWDDACEASFQNL 998
            +TK +RPTT                              LTKKGVPF WDD CE SFQ L
Sbjct: 786  VTKRKRPTTVTEIRSFLGLVGYYRRFVXDFARIATPLTQLTKKGVPFVWDDTCEVSFQEL 845

Query: 999  KERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYASRQLKEYEKNYHTHDL 1058
            K+RLV+APVL VPESS GY IYSDAS KGLGCVLMQHGKVVAYAS QLK+YEKNY THDL
Sbjct: 846  KQRLVSAPVLTVPESSVGYAIYSDASKKGLGCVLMQHGKVVAYASHQLKDYEKNYPTHDL 905

Query: 1059 ELAAVVFALKIWRHYLYGEKTQIFTNHKSLKYFFTQKELNMRQRRW-------------- 1118
            ELAAVVFALKIWRHY YGEKTQI+T+HKSLKY FTQKELNMRQRRW              
Sbjct: 906  ELAAVVFALKIWRHYPYGEKTQIYTDHKSLKYLFTQKELNMRQRRWLELVKDYDIDIQYH 965

Query: 1119 ------------------------------------------------------------ 1178
                                                                        
Sbjct: 966  PGKANVVADALSRKVVHSSALITREPRGRTDFEQADIVVVTKEVAAQLARMTVRPTLRQR 1025

Query: 1179 ------------------------------------------------------------ 1238
                                                                        
Sbjct: 1026 IIDSQREDPSLSKILDQLEVGPVDGFTKSTDDGLLCQGRLCVPPLSGIKNEILTEAHNSA 1085

Query: 1239 ------------------------------------------------------------ 1298
                                                                        
Sbjct: 1086 FSIHPGGTKMYQDLKKHFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPEWK 1145

Query: 1299 ------------------------------------------------------------ 1358
                                                                        
Sbjct: 1146 WENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLLGKATYTVDNWAQLYVKEIVRLHG 1205

Query: 1359 ------------------------------------------------------------ 1387
                                                                        
Sbjct: 1206 VPVSIVSDRDPRFMSAFWRCLQRAMGSWDTKLHLMEFSYNNSFQATIGMAPFEALYGKRC 1265

[Close]

BLAST of CmoCh10G011790 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 1454.5 bits (3764), Expect = 0.0e+00
Identity = 771/1303 (59.17%), Postives = 923/1303 (70.84%), Query Frame = 0


Query: 155  APIKAQKQAQAQAQALAQVQAQVQAQAQATAQANAPINP----PQPVRCS---NWIRDFK 214
            AP  A +Q QA         AQ QA A   AQA AP  P    P PV+ S     +RDF+
Sbjct: 59   APFLAAQQNQAAPVQAEAAPAQAQA-APVQAQAVAPPAPEEAQPVPVQLSTEAKHLRDFR 118

Query: 215  RYDPRPFTGSLVDPIEAQMWIVVVETTFETMECPENQKVACATFVLQKDAEIWWRDNKTL 274
            +Y+P+ F GS+ +P +AQMW+  +ET F  M+CPE+QKV CA F L+     WW   + +
Sbjct: 119  KYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTAWWETAERM 178

Query: 275  LNPEGGPMNWERFKEAFLKEYYLKSERLKRQQEFTHLVQGGLTVEKYNREFNKLKRFAPS 334
            L  +   + WE+FKE F  +++  + +  + QEF +L QG +TVE+Y+ EF+ L RFAP 
Sbjct: 179  LGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPD 238

Query: 335  MVDTEEKMTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPK---DEKRCEEPVII 394
            MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+     K       +
Sbjct: 239  MVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADASKAAGRGSAL 298

Query: 395  GQKRHELGGSDRPPLARRHRSNNRPAPRWDDRRPPRHTDRNPRNQDGARGR--RE-EGCT 454
            GQKR      D  P  R  RS                  +  R +  A GR  RE   CT
Sbjct: 299  GQKRKVETQPDVAP-QRTLRSGG--------------VFQRHRRELAAAGRTLRELPACT 358

Query: 455  ICGRLHGGRCMAGSRACYRCGQEGHIAVNCTVGNAAAQANPPRVVEQMDQPAPLRA-QAR 514
             CGR+HGGRC+AGS  C+RC Q GH A  C           PR   +   P P  A Q R
Sbjct: 359  TCGRVHGGRCLAGSGVCFRCRQPGHTADMC-----------PRKPFETTPPQPSAAQQGR 418

Query: 515  AYASTSKDTGRSDAVVTGTLSILGHFAFTLFDSGSTHSFISMPFVVQAGFELEPLLHEMS 574
             +A+T ++  R+  VVTGTL ILGH+AF LFDSGS+HSFIS  FV   G E+EPL   +S
Sbjct: 419  VFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLGSVLS 478

Query: 575  VSTPAGVDLVSRDRVKDGQVIIGNQTLSVDLMVVNMTDFDIILGMDWLAENRASIDCRKK 634
            VSTP+G  L+S++++K  +V I N+ L V L+V++M DFD+ILGMDWL+ N A+IDC  K
Sbjct: 479  VSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGK 538

Query: 635  EVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAILACAVDVRGKKETLVNVP 694
            EV F+PP   +FKF+G      PKV+S MKA +L+ QG W ILA  VDVR  + +L + P
Sbjct: 539  EVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEP 598

Query: 695  IVNEFPDVFPNDLPGIPPSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLLDK 754
            +V E+PDVFP++LPG+PP R VDF IELEP T PIS+APYRMAPAELKELK QLQ+LLDK
Sbjct: 599  VVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDK 658

Query: 755  GFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREATVF 814
            GFIRPSVSPWGAPVLFVKKKD SMRLCIDYRELNK T+KN+YPLPRI+DLFDQL+ ATVF
Sbjct: 659  GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 718

Query: 815  SKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLD 874
            SKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAVFM+LMNRVFKE LD
Sbjct: 719  SKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKEFLD 778

Query: 875  MFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVSKD 934
             FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKCEFWLR+V+FLGHVVS +
Sbjct: 779  SFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSE 838

Query: 935  GISVDPTKVEAITKWERPTT------------------------------LTKKGVPFRW 994
            G+SVDP K+EA+T W RP+T                              LT+KG PF W
Sbjct: 839  GVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW 898

Query: 995  DDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYASRQLK 1054
              ACE SFQ LK++LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYASRQLK
Sbjct: 899  SPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 958

Query: 1055 EYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKYFFTQKELNMRQRRW--- 1114
             +E+NY THDLELAAVVFALKIWRHYLYGEK QI+T+HKSLKYFFTQKELNMRQRRW   
Sbjct: 959  IHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 1018

Query: 1115 ------------------------KTVHSSALITREVRVQREFERANIAVATEGVIAQLA 1174
                                    K  HS+ALIT++  + R+FERA IAV+   V AQLA
Sbjct: 1019 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLA 1078

Query: 1175 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1234
            +LTVQPTLRQ+IIA+Q +DP L +    ++    +GFS SSD+ L+++GRLCVP    ++
Sbjct: 1079 QLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVK 1138

Query: 1235 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1294
             E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AG
Sbjct: 1139 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVSRCLVCQQVKAPRQHPAG 1198

Query: 1295 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1354
            LLQPLS+P WKWE+++MDFI GLPKT +GYTVIWVVVDRLTKSAHF+P K TYT   W +
Sbjct: 1199 LLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQ 1258

Query: 1355 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1387
            LY+ EIVRLHGVPVSI+SDRD RFTS FW+GLQ ALGTR DFSTAFHPQTDGQTERLNQI
Sbjct: 1259 LYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQI 1318

[Close]

BLAST of CmoCh10G011790 vs. ExPASy TrEMBL
Match: A0A5A7TSL0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001340 PE=4 SV=1)

HSP 1 Score: 1454.5 bits (3764), Expect = 0.0e+00
Identity = 771/1303 (59.17%), Postives = 923/1303 (70.84%), Query Frame = 0


Query: 155  APIKAQKQAQAQAQALAQVQAQVQAQAQATAQANAPINP----PQPVRCS---NWIRDFK 214
            AP  A +Q QA         AQ QA A   AQA AP  P    P PV+ S     +RDF+
Sbjct: 59   APFLAAQQNQAAPVQAEAAPAQAQA-APVQAQAVAPPAPEEAQPVPVQLSAEAKHLRDFR 118

Query: 215  RYDPRPFTGSLVDPIEAQMWIVVVETTFETMECPENQKVACATFVLQKDAEIWWRDNKTL 274
            +Y+P+ F GS+ +P +AQMW+  +ET F  M+CPE+QKV CA F L+     WW   + +
Sbjct: 119  KYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTAWWETAERM 178

Query: 275  LNPEGGPMNWERFKEAFLKEYYLKSERLKRQQEFTHLVQGGLTVEKYNREFNKLKRFAPS 334
            L  +   + WE+FKE F  +++  + +  + QEF +L QG +TVE+Y+ EF+ L RFAP 
Sbjct: 179  LGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPD 238

Query: 335  MVDTEEKMTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPK---DEKRCEEPVII 394
            MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+     K       +
Sbjct: 239  MVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADASKAAGRGSAL 298

Query: 395  GQKRHELGGSDRPPLARRHRSNNRPAPRWDDRRPPRHTDRNPRNQDGARGR--RE-EGCT 454
            GQKR      D  P  R  RS                  +  R +  A GR  RE   CT
Sbjct: 299  GQKRKVETQPDVAP-QRTLRSGG--------------VFQRHRRELAAAGRTLRELPACT 358

Query: 455  ICGRLHGGRCMAGSRACYRCGQEGHIAVNCTVGNAAAQANPPRVVEQMDQPAPLRA-QAR 514
             CGR+HGGRC+AGS  C+RC Q GH A  C           PR   +   P P  A Q R
Sbjct: 359  TCGRVHGGRCLAGSGVCFRCRQPGHTADMC-----------PRKPFETTPPQPSAAQQGR 418

Query: 515  AYASTSKDTGRSDAVVTGTLSILGHFAFTLFDSGSTHSFISMPFVVQAGFELEPLLHEMS 574
             +A+T ++  R+  VVTGTL ILGH+AF LFDSGS+HSFIS  FV   G E+EPL   +S
Sbjct: 419  VFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLGSVLS 478

Query: 575  VSTPAGVDLVSRDRVKDGQVIIGNQTLSVDLMVVNMTDFDIILGMDWLAENRASIDCRKK 634
            VSTP+G  L+S++++K  +V I N+ L V L+V++M DFD+ILGMDWL+ N A+IDC  K
Sbjct: 479  VSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGK 538

Query: 635  EVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAILACAVDVRGKKETLVNVP 694
            EV F+PP   +FKF+G      PKV+S MKA +L+ QG W ILA  VDVR  + +L + P
Sbjct: 539  EVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEP 598

Query: 695  IVNEFPDVFPNDLPGIPPSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLLDK 754
            +V E+PDVFP++LPG+PP R VDF IELEP T PIS+APYRMAPAELKELK QLQ+LLDK
Sbjct: 599  VVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDK 658

Query: 755  GFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREATVF 814
            GFIRPSVSPWGAPVLFVKKKD SMRLCIDYRELNK T+KN+YPLPRI+DLFDQL+ ATVF
Sbjct: 659  GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 718

Query: 815  SKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLD 874
            SKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAVFM+LMNRVFKE LD
Sbjct: 719  SKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKEFLD 778

Query: 875  MFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVSKD 934
             FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKCEFWLR+V+FLGHVVS +
Sbjct: 779  SFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSE 838

Query: 935  GISVDPTKVEAITKWERPTT------------------------------LTKKGVPFRW 994
            G+SVDP K+EA+T W RP+T                              LT+KG PF W
Sbjct: 839  GVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW 898

Query: 995  DDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYASRQLK 1054
              ACE SFQ LK++LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYASRQLK
Sbjct: 899  SPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 958

Query: 1055 EYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKYFFTQKELNMRQRRW--- 1114
             +E+NY THDLELAAVVFALKIWRHYLYGEK QI+T+HKSLKYFFTQKELNMRQRRW   
Sbjct: 959  IHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 1018

Query: 1115 ------------------------KTVHSSALITREVRVQREFERANIAVATEGVIAQLA 1174
                                    K  HS+ALIT++  + R+FERA IAV+   V AQLA
Sbjct: 1019 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLA 1078

Query: 1175 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1234
            +LTVQPTLRQ+IIA+Q +DP L +    ++    +GFS SSD+ L+++GRLCVP    ++
Sbjct: 1079 QLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVK 1138

Query: 1235 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1294
             E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AG
Sbjct: 1139 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVSRCLVCQQVKAPRQHPAG 1198

Query: 1295 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1354
            LLQPLS+P WKWE+++MDFI GLPKT +GYTVIWVVVDRLTKSAHF+P K TYT   W +
Sbjct: 1199 LLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQ 1258

Query: 1355 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1387
            LY+ EIVRLHGVPVSI+SDRD RFTS FW+GLQ ALGTR DFSTAFHPQTDGQTERLNQI
Sbjct: 1259 LYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQI 1318

[Close]

BLAST of CmoCh10G011790 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 1454.5 bits (3764), Expect = 0.0e+00
Identity = 772/1303 (59.25%), Postives = 923/1303 (70.84%), Query Frame = 0


Query: 155  APIKAQKQAQAQAQALAQVQAQVQAQAQATAQANAPINP----PQPVRCS---NWIRDFK 214
            AP  A +Q QA         AQ QA A   AQA AP  P    P PV+ S     +RDF+
Sbjct: 382  APFLAAQQNQAAPVQAEAAPAQAQA-APVQAQAVAPPAPEEAQPVPVQLSTEAKHLRDFR 441

Query: 215  RYDPRPFTGSLVDPIEAQMWIVVVETTFETMECPENQKVACATFVLQKDAEIWWRDNKTL 274
            +Y+P+ F GS+ +P +AQMW+  +ET F  M+CPE+QKV CA F L+     WW   + +
Sbjct: 442  KYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTAWWETAERM 501

Query: 275  LNPEGGPMNWERFKEAFLKEYYLKSERLKRQQEFTHLVQGGLTVEKYNREFNKLKRFAPS 334
            L  +   + WE+FKE F  +++  + +  + QEF +L QG +TVE+Y+ EF+ L RFAP 
Sbjct: 502  LGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPD 561

Query: 335  MVDTEEKMTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPK---DEKRCEEPVII 394
            MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+     K       +
Sbjct: 562  MVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADASKAAGRGSAL 621

Query: 395  GQKRHELGGSDRPPLARRHRSNNRPAPRWDDRRPPRHTDRNPRNQDGARGR--RE-EGCT 454
            GQKR      D  P  R  RS                  +  R +  A GR  RE   CT
Sbjct: 622  GQKRKVETQPDVAP-QRTLRSGG--------------VFQRHRRELAAAGRTLRELPACT 681

Query: 455  ICGRLHGGRCMAGSRACYRCGQEGHIAVNCTVGNAAAQANPPRVVEQMDQPAPLRA-QAR 514
             CGR+HGGRC+AGS  C+RC Q GH A  C           PR   +   P P  A Q R
Sbjct: 682  TCGRVHGGRCLAGSGVCFRCRQPGHTADMC-----------PRKPFETTPPQPSAAQQGR 741

Query: 515  AYASTSKDTGRSDAVVTGTLSILGHFAFTLFDSGSTHSFISMPFVVQAGFELEPLLHEMS 574
             +A+T ++  R+  VVTGTL ILGH+AF LFDSGS+HSFIS  FV   G E+EPL   +S
Sbjct: 742  VFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLGSVLS 801

Query: 575  VSTPAGVDLVSRDRVKDGQVIIGNQTLSVDLMVVNMTDFDIILGMDWLAENRASIDCRKK 634
            VSTP+G  L+S++++K  +V I N+ L V L+V++M DFD+ILGMDWL+ N A+IDC  K
Sbjct: 802  VSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGK 861

Query: 635  EVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAILACAVDVRGKKETLVNVP 694
            EV F+PP   +FKF+G      PKV+S MKA +L+ QG W ILA  VDVR  + +L + P
Sbjct: 862  EVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEP 921

Query: 695  IVNEFPDVFPNDLPGIPPSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLLDK 754
            +V E+PDVFP++LPG+PP R VDF IELEP T PIS+APYRMAPAELKELK QLQ+LLDK
Sbjct: 922  VVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDK 981

Query: 755  GFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREATVF 814
            GFIRPSVSPWGAPVLFVKKKD SMRLCIDYRELNK T+KN+YPLPRI+DLFDQL+ ATVF
Sbjct: 982  GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1041

Query: 815  SKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLD 874
            SKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAVFM+LMNRVFK+ LD
Sbjct: 1042 SKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLD 1101

Query: 875  MFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVSKD 934
             FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKCEFWLR+V+FLGHVVS +
Sbjct: 1102 SFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSE 1161

Query: 935  GISVDPTKVEAITKWERPTT------------------------------LTKKGVPFRW 994
            G+SVDP K+EA+T W RP+T                              LT+KG PF W
Sbjct: 1162 GVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW 1221

Query: 995  DDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYASRQLK 1054
              ACE SFQ LK++LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYASRQLK
Sbjct: 1222 SPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 1281

Query: 1055 EYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKYFFTQKELNMRQRRW--- 1114
             +E+NY THDLELAAVVFALKIWRHYLYGEK QI+T+HKSLKYFFTQKELNMRQRRW   
Sbjct: 1282 IHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 1341

Query: 1115 ------------------------KTVHSSALITREVRVQREFERANIAVATEGVIAQLA 1174
                                    K  HS+ALIT++  + R+FERA IAV+   V AQLA
Sbjct: 1342 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLA 1401

Query: 1175 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1234
            +LTVQPTLRQ+IIA+Q +DP L +    ++    +GFS SSD+ L+++GRLCVP    ++
Sbjct: 1402 QLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVK 1461

Query: 1235 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1294
             E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AG
Sbjct: 1462 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVSRCLVCQQVKAPRQHPAG 1521

Query: 1295 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1354
            LLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKSAHF+P K TYT   W +
Sbjct: 1522 LLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQ 1581

Query: 1355 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1387
            LY+ EIVRLHGVPVSIVSDRD RFTS FW+GLQ ALGTR DFSTAFHPQTDGQTERLNQI
Sbjct: 1582 LYMTEIVRLHGVPVSIVSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQI 1641

[Close]

BLAST of CmoCh10G011790 vs. ExPASy TrEMBL
Match: A0A5A7UBH7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001510 PE=4 SV=1)

HSP 1 Score: 1454.5 bits (3764), Expect = 0.0e+00
Identity = 771/1303 (59.17%), Postives = 923/1303 (70.84%), Query Frame = 0


Query: 155  APIKAQKQAQAQAQALAQVQAQVQAQAQATAQANAPINP----PQPVRCS---NWIRDFK 214
            AP  A +Q QA         AQ QA A   AQA AP  P    P PV+ S     +RDF+
Sbjct: 547  APFLAAQQNQAAPVQAEAAPAQAQA-APVQAQAVAPPAPEEAQPVPVQLSTEAKHLRDFR 606

Query: 215  RYDPRPFTGSLVDPIEAQMWIVVVETTFETMECPENQKVACATFVLQKDAEIWWRDNKTL 274
            +Y+P+ F GS+ +P +AQMW+  +ET F  M+CPE+QKV CA F L+     WW   + +
Sbjct: 607  KYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTAWWETAERM 666

Query: 275  LNPEGGPMNWERFKEAFLKEYYLKSERLKRQQEFTHLVQGGLTVEKYNREFNKLKRFAPS 334
            L  +   + WE+FKE F  +++  + +  + QEF +L QG +TVE+Y+ EF+ L RFAP 
Sbjct: 667  LGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPD 726

Query: 335  MVDTEEKMTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPK---DEKRCEEPVII 394
            MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+     K       +
Sbjct: 727  MVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADASKAAGRGSAL 786

Query: 395  GQKRHELGGSDRPPLARRHRSNNRPAPRWDDRRPPRHTDRNPRNQDGARGR--RE-EGCT 454
            GQKR      D  P  R  RS                  +  R +  A GR  RE   CT
Sbjct: 787  GQKRKVETQPDVAP-QRTLRSGG--------------VFQRHRRELAAAGRTLRELPACT 846

Query: 455  ICGRLHGGRCMAGSRACYRCGQEGHIAVNCTVGNAAAQANPPRVVEQMDQPAPLRA-QAR 514
             CGR+HGGRC+AGS  C+RC Q GH A  C           PR   +   P P  A Q R
Sbjct: 847  TCGRVHGGRCLAGSGVCFRCRQPGHTADMC-----------PRKPFETTPPQPSAAQQGR 906

Query: 515  AYASTSKDTGRSDAVVTGTLSILGHFAFTLFDSGSTHSFISMPFVVQAGFELEPLLHEMS 574
             +A+T ++  R+  VVTGTL ILGH+AF LFDSGS+HSFIS  FV   G E+EPL   +S
Sbjct: 907  VFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLGSVLS 966

Query: 575  VSTPAGVDLVSRDRVKDGQVIIGNQTLSVDLMVVNMTDFDIILGMDWLAENRASIDCRKK 634
            VSTP+G  L+S++++K  +V I N+ L V L+V++M DFD+ILGMDWL+ N A+IDC  K
Sbjct: 967  VSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGK 1026

Query: 635  EVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAILACAVDVRGKKETLVNVP 694
            EV F+PP   +FKF+G      PKV+S MKA +L+ QG W ILA  VDVR  + +L + P
Sbjct: 1027 EVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEP 1086

Query: 695  IVNEFPDVFPNDLPGIPPSRAVDFVIELEPETGPISKAPYRMAPAELKELKAQLQDLLDK 754
            +V E+PDVFP++LPG+PP R VDF IELEP T PIS+APYRMAPAELKELK QLQ+LLDK
Sbjct: 1087 VVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDK 1146

Query: 755  GFIRPSVSPWGAPVLFVKKKDASMRLCIDYRELNKRTIKNKYPLPRIEDLFDQLREATVF 814
            GFIRPSVSPWGAPVLFVKKKD SMRLCIDYRELNK T+KN+YPLPRI+DLFDQL+ ATVF
Sbjct: 1147 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1206

Query: 815  SKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFKECLD 874
            SKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAVFM+LMNRVFKE LD
Sbjct: 1207 SKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKEFLD 1266

Query: 875  MFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHVVSKD 934
             FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKCEFWLR+V+FLGHVVS +
Sbjct: 1267 SFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSE 1326

Query: 935  GISVDPTKVEAITKWERPTT------------------------------LTKKGVPFRW 994
            G+SVDP K+EA+T W RP+T                              LT+KG PF W
Sbjct: 1327 GVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW 1386

Query: 995  DDACEASFQNLKERLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYASRQLK 1054
              ACE SFQ LK++LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYASRQLK
Sbjct: 1387 SPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 1446

Query: 1055 EYEKNYHTHDLELAAVVFALKIWRHYLYGEKTQIFTNHKSLKYFFTQKELNMRQRRW--- 1114
             +E+NY THDLELAAVVFALKIWRHYLYGEK QI+T+HKSLKYFFTQKELNMRQRRW   
Sbjct: 1447 IHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 1506

Query: 1115 ------------------------KTVHSSALITREVRVQREFERANIAVATEGVIAQLA 1174
                                    K  HS+ALIT++  + R+FERA IAV+   V AQLA
Sbjct: 1507 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLA 1566

Query: 1175 RLTVQPTLRQRIIASQREDPNLQKVLGQLDESPVDGFSKSSDEELLYQGRLCVPAIEDLR 1234
            +LTVQPTLRQ+IIA+Q +DP L +    ++    +GFS SSD+ L+++GRLCVP    ++
Sbjct: 1567 QLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVK 1626

Query: 1235 KEVLMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAG 1294
             E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AG
Sbjct: 1627 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVSRCLVCQQVKAPRQHPAG 1686

Query: 1295 LLQPLSIPKWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPRKVTYTVDDWAK 1354
            LLQPLS+P WKWE+++MDFI GLPKT +GYTVIWVVVDRLTKSAHF+P K TYT   W +
Sbjct: 1687 LLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQ 1746

Query: 1355 LYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRFDFSTAFHPQTDGQTERLNQI 1387
            LY+ EIVRLHGVPVSI+SDRD RFTS FW+GLQ ALGTR DFSTAFHPQTDGQTERLNQI
Sbjct: 1747 LYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQI 1806

[Close]

BLAST of CmoCh10G011790 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-09
Identity = 35/124 (28.23%), Postives = 54/124 (43.55%), Query Frame = 0


Query: 883 HLRKVLTTLREHKLYAKFSKCEFWLRQVSFLG--HVVSKDGISVDPTKVEAITKWERPTT 942
           HL  VL    +H+ YA   KC F   Q+++LG  H++S +G+S DP K+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 943 LTK-----------------------------KGVPFRWDDACEASFQNLKERLVTAPVL 976
            T+                             K    +W +    +F+ LK  + T PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

The following BLAST results are available for this feature:

BLAST of CmoCh10G011790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	1.1e-102	32.77	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	3.3e-102	32.52	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	3.5e-96	28.25	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.5e-96	28.25	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.5e-96	28.25	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh10G011790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYH9	0.0e+00	54.95	Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111440131 PE=4 SV=1	[more]
A0A5A7UBS1	0.0e+00	59.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TSL0	0.0e+00	59.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5D3BTN0	0.0e+00	59.25	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UBH7	0.0e+00	59.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]

BLAST of CmoCh10G011790 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.3e-09	28.23	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 720..740
None	No IPR available	GENE3D	4.10.60.10		coord: 453..497 e-value: 1.5E-5 score: 27.2
None	No IPR available	PFAM	PF08284	RVP_2	coord: 497..626 e-value: 7.1E-32 score: 110.1
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 703..842 e-value: 1.9E-92 score: 310.4
None	No IPR available	GENE3D	1.10.340.70		coord: 1139..1215 e-value: 1.3E-17 score: 65.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..68
None	No IPR available	PANTHER	PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	coord: 939..1386 coord: 681..941
None	No IPR available	CDD	cd01647	RT_LTR	coord: 741..917 e-value: 2.55295E-92 score: 293.347
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 519..609 e-value: 3.0005E-17 score: 76.2212
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 981..1067 e-value: 1.4029E-39 score: 141.091
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 457..473 e-value: 2.1E-4 score: 30.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 456..472 e-value: 6.2E-6 score: 26.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 458..471 score: 10.394444
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 1161..1216 e-value: 2.9E-17 score: 62.5
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 498..629 e-value: 1.6E-20 score: 75.2
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 516..616
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 979..1068 e-value: 2.3E-29 score: 101.8
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 249..344 e-value: 1.4E-11 score: 44.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 757..916 e-value: 1.1E-28 score: 100.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 738..917 score: 11.745477
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1225..1386 e-value: 1.1E-40 score: 141.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 939..980 e-value: 3.7E-6 score: 28.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 782..917 e-value: 1.9E-92 score: 310.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1227..1386 score: 19.753416
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 681..1069
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1228..1384

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011790.1	CmoCh10G011790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding