CmoCh10G011710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G011710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSuperoxide dismutase [Cu-Zn]
LocationCmo_Chr10: 10479265 .. 10483362 (-)
RNA-Seq ExpressionCmoCh10G011710
SyntenyCmoCh10G011710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGTCTTCTACTGCTTCAATATCTCCCGACCTTTCTTTCAGCCGTCCAAGGGGTGTTCTGAGGTGAGCCTTCCTCTCTCTCTCGTTTCTTCCATGATTCTTTGTTTCTCAGATCCATCGCTTTACTGAAATCTGATCTGATTTTTGCTGTATTAGCTCCTTGTTATGATGCTTGGCTGTAATTCTTACGAAATTCTACCTTAATCCAGTTGTTATTGTGATGATCTTCTTTTGGATGATATGATATCTAGTTTCATCTCAAATTTTGAAATGATTTGATTCATCGCTTGTAACAGTGTGATTTTGTACTCTTCGATGCCGATCAAAACTGTGACAGTTGTACCGAATTTTACCTTAATGATTCCATAACGTTGACTATTTGGAACTTTAGATTGCTACTTTACCTGATTTGAGATAGTACGAAACTTGTGGTATTCATCATAATCGGTCCAGATTTTATGTACAGCTCGCATAATTATGAGCTTGTTCTTGTTATTTTGGATTGGAGTCCTTTTCTAAGGTAGGGCTGGACTTCATTCTTTTATTCCTCTCGATGAAGGTGCGGGATTTTTACCCTAAATTATTTGGCCCATTTGTGAAATGTCAAAATGCATGTTTTGCAAGGAGATGGTGATCTGGTGTCTGTATCTGAAAGTTTCTGATTTCTTTCGTTGATTTCATGTTTTTCTTAGTTCTTATTTAATTTTGTTAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTGTTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTAATATGGTGATTGGTTTCATCTGTGCTTGCCATGTTCATTTCCTCTCTGTCTTGTAATTAGACTGAAATTGTTTCAGGTCCAACCACTGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACTAACGGCTGCATGTCAACTGGTATTGCTATTGACATTTAGGATATTTTCATGACCTCTCTACTTTGAAGTAATTTAGATGTTTGTCAAACAATTGAAAATAGATGCCTTCCTTTATCCAGCATTAATTTTTTTTTATTAGATCTTGGCAGTAAAATTTCTCAATATACTTACAGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGATGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGTACGCTTCACATAGAATAAGTTCAATTCTTGCTGTGTTATGTTCTATTTTCTTTTTGGCATAACCCCCTTATATTATACTTGTTGAGGCTATTTTTGTAAGAATATGTTCTTATCTTAGATTTTCTTTGATATGTACCTAATCTGATGTTGGCTCTGATATCTTGTTCTATTTATTTAGTTGTTGAATACTAACACTTTCAACGTTGTGTACAGGAAAGGCTAGCTTTACCATTACTGATAACCAGGTATTTCCTTCTGCCCCTGTTTAATTAATTTGGTTAGGGAAAAACAATATGGTTCTTCCTCCTTGTGTTAACATTGATCTTACATGCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTAGTCCATGCTGACCCCGACGATCTTGGCAAGGGTAATTTCTCTAAGCATTTGTTGTTCGATTGTCCTTTGAGCTATTCTTGATAGTATCTCGTCCTATATCTTCCATATCCCGACTCAAGAAGATTATTGTCAATCAGTAAGGCTGTTCCACAGACAATTATTTATTTTCTTCAAAAAAATTCATAGTGATAATCTCCCATGTTTTGTTTAGTTTCTTTCATCTGCGGGGTTCATGAACAGGCTTATAGAACAGAAGTCTGAACTGGATCAATTATATAATAGAGTTCAAATGATTATTTGGGGGCGGTTAGAACTCAGTTGTTACACAAAACCAATTGTCTATCAATATTCAAAGGGGAAATAACATGGTAGGGATCAATTTTAGGACTCCGTGCTCGAAAACCATGTTAACTATCACTAAACTCTCAAAAGCATAAGCTGATAGGTAAGAGGAAAATAAGTAGGGTATTTTTCACTGAATTTTCTTCATGTTTGGAAGTCTTACTAGGTGCTTTGGAAAAACTTCAAAACATCTAAAAATGCTTTGTGAGAAAGCATTTGTAGAGTGATTGATTGCATTCAAATGTGCTTTTAAGATTGTAAAATATTTTCTATCAAACACTTCTTACTAGTGTCTTTTTGCTTAAAGTATCATGAAGTATTATCTACCATGGGTTGTTGATGGGTCACCTACTTAGGATTTAATATTGTGTTACTCTTATAACCGAAATGTAGTAAAGTCGGATAGTTCTCTCACAAGAATAACGAAAATGTGTGCCAAATGTATCTTGAAGCGTTCCCAAACATGCCTTTTTATGTATTATCTTATCAATTAGGTAATTTTTGATATGTAGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCAAACCCTGAAATTTTTATATTCTTCTTCCATCCGGCCTTGCTCTATTAAGGTTATATGCCGTTCACCACATTTCTGAACCGTTAACATCATTTCTTTTGTCTTTTTTATTTTTTATTTTTTATTTTCAGGCATTATTGGGCTTCAAGGTTGAAATTCGTGCCCGTTGTTATCTAAGAATCGAATCCAAGTGCTCTTATGTTTCCAGGAAGAGTCCTAAACTCTTTTTATTGAATAAAAGCAAGGCATTGGATTGTTTTGTTCTGTTTGTGATGATAGATCTTTTACTTATCTGTTCTTGTCTGCTGTTCTATTAATATATATCTGGAATTTTAGTGTCTTCTTTTTAAGTCAAAATCACAAAAATTCGAAACAAACTAGAAGGCCTCACAGATTACAAGAACACTAGGGTGATTCCTATCTTGAAGAACCAGATTGGATTCCAAACTTGTTTTGTTTGTAAGATGGGTCCTCCTTATCACCCTAACACCTTTCTTTTCCTGCAAATAAAACACTAGGGATGATTTTTTTGATTTTATTTGATAGGAAGTGAAAGAATATAGAGAGCAAATGAAAGATCCCATATTGGTTGGACGGGCGGGGGGAAAACATTCTTTACAAAGGTGTGGAAATCTCTCTAGTAGATGCATTTTATAACCTCGAAGGGCAGTCTAAAAGGAAAAGCTTAACGAGGACAATATTTGCTAGCGGTGAGTTTAGATTGTTACAAATGGTATTAGAGCGAGACATTGTGTAATGTGCCAGTGAGGACGCTGAGCTCCTAGGGGGGTGGATTGTGAGATGCTGTATTAGTTGGAGAGCGGAATGAAGCAACCTCTCCCTAGTAAACACGTTTTAAAACTTTGAGGGAAAGCCTTAATAGGACATTATCTGCTAAAGGTCATAGATGAAACTTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCAATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTACTTACACGACCTTGACTATCAACTACAAATTAGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAACTAGATACCTACTATAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCGGGCTTTGAGCTGTTATAGAAAATGAGTGATGATAATTAGAAAAGGGTTGAGAAAGAAGAATAATGTTAGATGATAAGAAGGAACTTTGATAGTCATATCATGGTAAAGATGGATATAGATGTTGAGGAATATTTTGGTGAGCCCCTTGGAATCTTCTGAACCGACTGATTGATAGAAACCTAATGGAATATTCTAAACCGTCCATAGAACTCAGAAGTTATCCCAAATACTATCAAATATTATCTTTAAACCAACAGTAGAATTTCAGTGTCAAATGTCTTGAGTATTTCCAATTCGGAATACGATCAACCATTGTTTACCTATTCGTTATTCATTGAAGGTCCGATAGACTTGAAGATCATGATATGA

mRNA sequence

AGAGTCTTCTACTGCTTCAATATCTCCCGACCTTTCTTTCAGCCGTCCAAGGGGTGTTCTGAGCTCGCATAATTATGAGCTTGTTCTTGTTATTTTGGATTGGAGTCCTTTTCTAAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTGTTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTCCAACCACTGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACTAACGGCTGCATGTCAACTGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGATGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGAAAGGCTAGCTTTACCATTACTGATAACCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTAGTCCATGCTGACCCCGACGATCTTGGCAAGGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGTCCGATAGACTTGAAGATCATGATATGA

Coding sequence (CDS)

ATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTGTTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTCCAACCACTGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACTAACGGCTGCATGTCAACTGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGATGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGAAAGGCTAGCTTTACCATTACTGATAACCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTAGTCCATGCTGACCCCGACGATCTTGGCAAGGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGTCCGATAGACTTGAAGATCATGATATGA

Protein sequence

MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSLSTGNAGARVACGPIDLKIMI
Homology
[Close]
BLAST of CmoCh10G011710 vs. ExPASy Swiss-Prot
Match: O22373 (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum OX=4072 GN=SODCC PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.8e-71
Identity = 128/151 (84.77%), Postives = 138/151 (91.39%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SECV GTI FSQ+GD PTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPAGK+HGAPEDENRHAGDLGNITVGEDG ASFTITD QIPL+GP SIIGR VVVHA
Sbjct: 61  PHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHEL+ +TGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELTKTTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 268.9 bits (686), Expect = 3.7e-71
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SE V GTIFFSQEGDGPTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAP D+NRHAGDLGNITVGEDG ASFTITD QIPL+G NS+IGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELS STGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy Swiss-Prot
Match: P23345 (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 5.3e-70
Identity = 126/151 (83.44%), Postives = 137/151 (90.73%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG+SE V GTIFF+QEGDGPTTVTG VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPA K+HGAPEDENRHAGDLGN+T G DG A+  +TD+QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELS STGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy Swiss-Prot
Match: P27082 (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 9.0e-70
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SE V GTIFF+Q+GD PTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPAGK+HGAPEDE RHAGDLGNITVGEDG ASFT+TD QIPL+GP SIIGRAVVVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELS +TGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy Swiss-Prot
Match: P23346 (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-69
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG+S+ V GTIFF+QEGDGPT VTG VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPA K+HGAPEDENRHAGDLGN+T G DG A+  +TD+QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELS STGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy TrEMBL
Match: W0FVL0 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=Cu PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-79
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSLSTGNAGARVACG I L+
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy TrEMBL
Match: A0A6J1HA41 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111461986 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-79
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSLSTGNAGARVACG I L+
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy TrEMBL
Match: A0A2Z4GT65 (Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSLSTGNAGARVACG I L+
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy TrEMBL
Match: W0FW16 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=Cu PE=2 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNS CVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSVCVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSLSTGNAGARVACG I L+
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. ExPASy TrEMBL
Match: A0A6J1DX40 (Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111025346 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 139/151 (92.05%), Postives = 144/151 (95.36%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG S+ V GTIFFSQEGDGPTTVTG+VSGLKAGLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGASDVVSGTIFFSQEGDGPTTVTGNVSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITD QIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDCQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSL+TGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-69
Identity = 125/151 (82.78%), Postives = 135/151 (89.40%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           M K VAVL +SE V GTIFF+QEGDG TTV+G VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNP GK HGAPED NRHAGDLGNITVG+DG A+FTITD QIPL+GPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSL+TGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-69
Identity = 125/151 (82.78%), Postives = 135/151 (89.40%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           M K VAVL +SE V GTIFF+QEGDG TTV+G VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNP GK HGAPED NRHAGDLGNITVG+DG A+FTITD QIPL+GPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           DPDDLGKGGHELSL+TGNAG RVACG I L+
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh10G011710 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 201.1 bits (510), Expect = 6.7e-52
Identity = 97/148 (65.54%), Postives = 110/148 (74.32%), Query Frame = 0 

Query: 3   KAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGPH 62
           KAVAVL  +  V G +  +Q+  GPTTV   ++GL  G HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHADP 122
           FNP    HGAPEDE RHAGDLGNI    DG A  TI DNQIPL+GPNS++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSLSTGNAGARVACGPIDL 151
           DDLGKGGHELSL+TGNAG R+ACG I L
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]
BLAST of CmoCh10G011710 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-50
Identity = 93/150 (62.00%), Postives = 110/150 (73.33%), Query Frame = 0 

Query: 2   VKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL  G HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHAD 121
           HFNP  + HG P +E RHAGDLGNI  G +G A   I D  IPLSG  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSLSTGNAGARVACGPIDLK 152
           PDDLGKGGH+LS STGNAG+RV CG I L+
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]
BLAST of CmoCh10G011710 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 77/127 (60.63%), Postives = 91/127 (71.65%), Query Frame = 0 

Query: 2   VKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL  G HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHAD 121
           HFNP  + HG P +E RHAGDLGNI  G +G A   I D  IPLSG  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKG 129
           PDDLGKG
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:
BLAST of CmoCh10G011710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O223732.8e-7184.77Superoxide dismutase [Cu-Zn] OS=Capsicum annuum OX=4072 GN=SODCC PE=2 SV=1[more]
Q077963.7e-7186.09Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2[more]
P233455.3e-7083.44Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2[more]
P270829.0e-7084.11Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ... [more]
P233464.5e-6982.12Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2[more]
BLAST of CmoCh10G011710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W0FVL02.2e-7998.01Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=Cu PE=2 SV=1[more]
A0A6J1HA412.2e-7998.01Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111461986 PE=3 ... [more]
A0A2Z4GT652.9e-7997.35Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1[more]
W0FW161.4e-7897.35Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=Cu PE=2 SV=1[more]
A0A6J1DX401.8e-7392.05Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111025346 PE=3... [more]
BLAST of CmoCh10G011710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08830.11.2e-6982.78copper/zinc superoxide dismutase 1 [more]
AT1G08830.21.2e-6982.78copper/zinc superoxide dismutase 1 [more]
AT2G28190.16.7e-5265.54copper/zinc superoxide dismutase 2 [more]
AT5G18100.13.7e-5062.00copper/zinc superoxide dismutase 3 [more]
AT5G18100.22.0e-4060.63copper/zinc superoxide dismutase 3 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 123..149
score: 70.41
coord: 79..88
score: 75.15
coord: 43..65
score: 79.25
coord: 98..120
score: 66.74
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 12..148
e-value: 5.6E-49
score: 165.9
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 2..145
e-value: 1.44525E-63
score: 189.779
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 1..152
e-value: 6.4E-67
score: 226.5
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 2..149
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 1..148
NoneNo IPR availablePANTHERPTHR10003:SF79SUPEROXIDE DISMUTASE [CU-ZN] 1coord: 1..148
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 137..148
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 43..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G011710.1CmoCh10G011710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046872 metal ion binding