CmoCh10G011190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr10: 7883378 .. 7884808 (+)
RNA-Seq Expression	CmoCh10G011190
Synteny	CmoCh10G011190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATATTATCCTAAGTCAGAGCGACTTAAAAAGCAGCAGGAGTTCGCCCACCTGGTACAGGGCGGACTCACAGTGGAGAAGTACAACCGAGAGTTTAATAGACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTATATTGGGTTTGGAACCAAGAATCCGCCGCATGTTGGAGGCGTTCAACCCAAAGACCTATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATGAGAAACGACGTGAAGAGCCAGTTATAATTGGGCAGAAGCGTCCTCATGAATCAGGAAGCTCTGACCGTCCACCACCAGCACGTAGGCACCGTTCCAATAACAGACTCGCTCCTAGATGGGATGAGCGACGCCCTCCCCGACGTACTGACAGGAACCCCAGGAATCAAGATGGGGCCAGAGGGAGGAGAGATGAAGGGTGCACTATCTGTGGAAGACTACACGGTGGGAGGTGCATGGCTGGCAGCCGAGCGTGTTATAGATGTGGTCAAGAGGGGCACATCGCCGTGAACTGCACGGCCGGAAATGCTGCAGCACAAGCAAACCCGCCCAGAGTAGTAGAGCAAACGGATCAACCAGCACCACCGCGAGCTCAAGCTAGGACCTACGTGTCAACCAGCAAGGACACTCGGAGGTTCGATGCCGTGGTGACAGGTACACTATCCATTTTAGGTCATTTTGCTTTTACCTTATTTGATTCTGGTTCCACGCATTCCTTTATTTCCATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTACGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGCCAAGTAATCATAGGGAACTAAACTTTAAGCGTTGACTTGATAGTGGTAAACATGACAGATTTCGACGTCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGTCGCAAAAAGGAAGTAAAATTTTCACCACCGACAGAACCTACCTTTAAATTTAAAAGCACAAATACCGGGGTTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAGAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGTTGTAGATGTAAGAGGAAAGAAAAAGACCCTAGTAAACGTGCCAATAGTAAATGAGTTCCCGGATGTATTTCTGGATGGCTTACCTGGAATACCCCCTTCCCAAGCGGTCGACTTCGTCATCGAACTCGAGCCGGGAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAACAGAGTTGAAGGAACTCAAGGCGCAATTGCAAGACTTACTAGATAAAGGATTCATTCGACCTAGCGTGTCCCCCTAG

mRNA sequence

ATGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATATTATCCTAAGTCAGAGCGACTTAAAAAGCAGCAGGAGTTCGCCCACCTGGTACAGGGCGGACTCACAGTGGAGAAGTACAACCGAGAGTTTAATAGACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTATATTGGGTTTGGAACCAAGAATCCGCCGCATGTTGGAGGCGTTCAACCCAAAGACCTATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATGAGAAACGACGTGAAGAGCCAGTTATAATTGGGCAGAAGCGTCCTCATGAATCAGGAAGCTCTGACCGTCCACCACCAGCACGTAGGCACCGTTCCAATAACAGACTCGCTCCTAGATGGGATGAGCGACGCCCTCCCCGACGTACTGACAGGAACCCCAGGAATCAAGATGGGGCCAGAGGGAGGAGAGATGAAGGGTGCACTATCTGTGGAAGACTACACGGTGGGAGGTGCATGGCTGGCAGCCGAGCGTGTTATAGATGTGGTCAAGAGGGGCACATCGCCGTGAACTGCACGGCCGGAAATGCTGCAGCACAAGCAAACCCGCCCAGAGTAGTAGAGCAAACGGATCAACCAGCACCACCGCGAGCTCAAGCTAGGACCTACGTGTCAACCAGCAAGGACACTCGGAGGTTCGATGCCGTGGTGACAGATTTCGACGTCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGTCGCAAAAAGGAAGTAAAATTTTCACCACCGACAGAACCTACCTTTAAATTTAAAAGCACAAATACCGGGGTTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAGAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGTTGTAGATGTAAGAGGAAAGAAAAAGACCCTAGTAAACGTGCCAATAGTAAATGAGTTCCCGGATGTATTTCTGGATGGCTTACCTGGAATACCCCCTTCCCAAGCGGTCGACTTCGTCATCGAACTCGAGCCGGGAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAACAGAGTTGAAGGAACTCAAGGCGCAATTGCAAGACTTACTAGATAAAGGATTCATTCGACCTAGCGTGTCCCCCTAG

Coding sequence (CDS)

ATGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATATTATCCTAAGTCAGAGCGACTTAAAAAGCAGCAGGAGTTCGCCCACCTGGTACAGGGCGGACTCACAGTGGAGAAGTACAACCGAGAGTTTAATAGACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTATATTGGGTTTGGAACCAAGAATCCGCCGCATGTTGGAGGCGTTCAACCCAAAGACCTATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATGAGAAACGACGTGAAGAGCCAGTTATAATTGGGCAGAAGCGTCCTCATGAATCAGGAAGCTCTGACCGTCCACCACCAGCACGTAGGCACCGTTCCAATAACAGACTCGCTCCTAGATGGGATGAGCGACGCCCTCCCCGACGTACTGACAGGAACCCCAGGAATCAAGATGGGGCCAGAGGGAGGAGAGATGAAGGGTGCACTATCTGTGGAAGACTACACGGTGGGAGGTGCATGGCTGGCAGCCGAGCGTGTTATAGATGTGGTCAAGAGGGGCACATCGCCGTGAACTGCACGGCCGGAAATGCTGCAGCACAAGCAAACCCGCCCAGAGTAGTAGAGCAAACGGATCAACCAGCACCACCGCGAGCTCAAGCTAGGACCTACGTGTCAACCAGCAAGGACACTCGGAGGTTCGATGCCGTGGTGACAGATTTCGACGTCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGTCGCAAAAAGGAAGTAAAATTTTCACCACCGACAGAACCTACCTTTAAATTTAAAAGCACAAATACCGGGGTTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAGAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGTTGTAGATGTAAGAGGAAAGAAAAAGACCCTAGTAAACGTGCCAATAGTAAATGAGTTCCCGGATGTATTTCTGGATGGCTTACCTGGAATACCCCCTTCCCAAGCGGTCGACTTCGTCATCGAACTCGAGCCGGGAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAACAGAGTTGAAGGAACTCAAGGCGCAATTGCAAGACTTACTAGATAAAGGATTCATTCGACCTAGCGTGTCCCCCTAG

Protein sequence

MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEKMTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGSSDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMAGSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFDAVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKRLVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTGPISKAPYRMAPTELKELKAQLQDLLDKGFIRPSVSP

Homology

[Close]

BLAST of CmoCh10G011190 vs. ExPASy TrEMBL
Match: A0A6J1EYK0 (uncharacterized protein LOC111439681 OS=Cucurbita moschata OX=3662 GN=LOC111439681 PE=4 SV=1)

HSP 1 Score: 701.0 bits (1808), Expect = 2.7e-198
Identity = 361/443 (81.49%), Postives = 373/443 (84.20%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLK+QQEFAHLVQGGLTVEKYNREFN+LKRFAPSMVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKRQQEFAHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKR EEPV+IGQKRPHESG 
Sbjct: 98  MTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRHEEPVVIGQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRPPPARRHRSNNR  PRWDER PPR T+RNPRNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPPPARRHRSNNRPTPRWDERHPPRHTNRNPRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNA AQANPPRVVE+TDQPAPPRAQAR Y STSKDT R D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNATAQANPPRVVEKTDQPAPPRAQARAYASTSKDTGRSD 277

Query: 241 AVV-------------------------------------------------TDFDVILG 300
           AVV                                                 TDFDVILG
Sbjct: 278 AVVTRFELEPLLHEMSVSTPAGVDLVSRDRVKDDQVIIGNQTLSVDLMVVNMTDFDVILG 337

Query: 301 MDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKRLVQQGGWAILA 360
           MDWLAENRASIDCRKKEVKFSPP  PTFKFK TNTG+TPKVVSMMKAKRLVQQGGWA+LA
Sbjct: 338 MDWLAENRASIDCRKKEVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAVLA 397

Query: 361 CVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTGPISKAPYRMAP 395
           C VDVRGK++TLVNVPIVNEFPDVF D LP IPPS+AVDFVIELEPGTGPI KAPYRMAP
Sbjct: 398 CAVDVRGKEETLVNVPIVNEFPDVFPDDLPRIPPSRAVDFVIELEPGTGPIFKAPYRMAP 457

[Close]

BLAST of CmoCh10G011190 vs. ExPASy TrEMBL
Match: A0A6J1FDT1 (uncharacterized protein LOC111444469 OS=Cucurbita moschata OX=3662 GN=LOC111444469 PE=4 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 2.0e-196
Identity = 348/378 (92.06%), Postives = 359/378 (94.97%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLK+QQEFAHLVQGGLTVEKYNREFN+LKRFAPSMVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKRQQEFAHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVII QKRPHESG 
Sbjct: 98  MTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIRQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRPPPARRHRSNNR APRWDERRPPR TDRNPRNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPPPARRHRSNNRPAPRWDERRPPRHTDRNPRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNAAAQANP RVVEQTDQPAPPRAQAR Y STSKDT R D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNAAAQANPLRVVEQTDQPAPPRAQARAYASTSKDTGRSD 277

Query: 241 AVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKR 300
            VVTDFDVILGMDWLAENRASIDC +KEVKFSPP  PTFKFK TNTG+TP+VVSMMKAK+
Sbjct: 278 VVVTDFDVILGMDWLAENRASIDCHQKEVKFSPPIGPTFKFKGTNTGITPRVVSMMKAKK 337

Query: 301 LVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTG 360
           LVQQGGWAILAC VDVRGK++TLVNVPIVNEFPDVF D LPGIPPS+AVDFVIELEPGTG
Sbjct: 338 LVQQGGWAILACAVDVRGKEETLVNVPIVNEFPDVFPDDLPGIPPSRAVDFVIELEPGTG 397

Query: 361 PISKAPYRMAPTELKELK 379
           PISKAPY MAP ELKELK
Sbjct: 398 PISKAPYHMAPAELKELK 415

[Close]

BLAST of CmoCh10G011190 vs. ExPASy TrEMBL
Match: A0A6J1FB91 (uncharacterized protein LOC111443856 OS=Cucurbita moschata OX=3662 GN=LOC111443856 PE=3 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.7e-152
Identity = 295/396 (74.49%), Postives = 305/396 (77.02%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           +NWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLT EKYNREFNRLKRFAPSMVDTEEK
Sbjct: 38  VNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGL PRIRRMLEAFNPKTYEEALRTAKALEKPKD+KR EE VIIGQKRPHESG 
Sbjct: 98  MTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
            DRPPPA RHRSNNR APRWDERRPPRRTDRNPRNQDGARGRR+EGCTICGRLH GRCMA
Sbjct: 158 FDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTA NAAAQAN PRVVEQTDQPAPPRAQAR Y STSKDTRR D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRAQARAYASTSKDTRRSD 277

Query: 241 AVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKR 300
           AVVT                                                        
Sbjct: 278 AVVT-------------------------------------------------------- 337

Query: 301 LVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTG 360
                         DVRGK+KT VNVPIVN+FPDVF D LP IPPS+AVD+VIEL+PGT 
Sbjct: 338 --------------DVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTE 363

Query: 361 PISKAPYRMAPTELKELKAQLQDLLDKGFIRPSVSP 397
           PISKAPYRM P ELKELKAQLQDLL+KGFIRPSVSP
Sbjct: 398 PISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSP 363

[Close]

BLAST of CmoCh10G011190 vs. ExPASy TrEMBL
Match: A0A6J1F0C1 (uncharacterized protein LOC111438022 OS=Cucurbita moschata OX=3662 GN=LOC111438022 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 6.2e-150
Identity = 294/390 (75.38%), Postives = 301/390 (77.18%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTV+KYNREFNRLKRFAP MVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVKKYNREFNRLKRFAPYMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGL PRIRRMLEAFN KTYEEALRTAKALEKPKDEKRREEPVIIGQKRPH+SG 
Sbjct: 98  MTEKFVLGLVPRIRRMLEAFNLKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHKSGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRP PARRHRSNNR APRWDE+RPPR  DRN RNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPLPARRHRSNNRPAPRWDEQRPPRCIDRNHRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQAR Y STSKDT R D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARAYASTSKDTGRSD 277

Query: 241 AVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKR 300
           AVVT                                                        
Sbjct: 278 AVVT-------------------------------------------------------- 337

Query: 301 LVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTG 360
                         DVRGKKKTLVNVPI NEF DVF D LPGIPPS+AVDF+IELEPGTG
Sbjct: 338 --------------DVRGKKKTLVNVPI-NEFLDVFPDDLPGIPPSRAVDFIIELEPGTG 356

Query: 361 PISKAPYRMAPTELKELKAQLQDLLDKGFI 391
           PISKAPYRMAP ELKELK QLQDLLDKGFI
Sbjct: 398 PISKAPYRMAPVELKELKVQLQDLLDKGFI 356

[Close]

BLAST of CmoCh10G011190 vs. ExPASy TrEMBL
Match: A0A6J1F4C9 (uncharacterized protein LOC111440130 OS=Cucurbita moschata OX=3662 GN=LOC111440130 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 8.7e-120
Identity = 220/229 (96.07%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLK+QQEFAHLVQGGLTVEKYNREFN+LKRFAPSMVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKRQQEFAHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESG 
Sbjct: 98  MTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRPPPARRHRSNNR APRWDERRPPR TDRNPRNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPPPARRHRSNNRPAPRWDERRPPRHTDRNPRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTY 230
           GSRACYRCGQEGHIAVNCTAGNA AQANPPRVVEQTDQPAPPRAQAR Y
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNAVAQANPPRVVEQTDQPAPPRAQARAY 266

[Close]

BLAST of CmoCh10G011190 vs. NCBI nr
Match: XP_022933017.1 (uncharacterized protein LOC111439681 [Cucurbita moschata])

HSP 1 Score: 701.0 bits (1808), Expect = 5.7e-198
Identity = 361/443 (81.49%), Postives = 373/443 (84.20%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLK+QQEFAHLVQGGLTVEKYNREFN+LKRFAPSMVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKRQQEFAHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKR EEPV+IGQKRPHESG 
Sbjct: 98  MTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRHEEPVVIGQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRPPPARRHRSNNR  PRWDER PPR T+RNPRNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPPPARRHRSNNRPTPRWDERHPPRHTNRNPRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNA AQANPPRVVE+TDQPAPPRAQAR Y STSKDT R D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNATAQANPPRVVEKTDQPAPPRAQARAYASTSKDTGRSD 277

Query: 241 AVV-------------------------------------------------TDFDVILG 300
           AVV                                                 TDFDVILG
Sbjct: 278 AVVTRFELEPLLHEMSVSTPAGVDLVSRDRVKDDQVIIGNQTLSVDLMVVNMTDFDVILG 337

Query: 301 MDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKRLVQQGGWAILA 360
           MDWLAENRASIDCRKKEVKFSPP  PTFKFK TNTG+TPKVVSMMKAKRLVQQGGWA+LA
Sbjct: 338 MDWLAENRASIDCRKKEVKFSPPIGPTFKFKGTNTGITPKVVSMMKAKRLVQQGGWAVLA 397

Query: 361 CVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTGPISKAPYRMAP 395
           C VDVRGK++TLVNVPIVNEFPDVF D LP IPPS+AVDFVIELEPGTGPI KAPYRMAP
Sbjct: 398 CAVDVRGKEETLVNVPIVNEFPDVFPDDLPRIPPSRAVDFVIELEPGTGPIFKAPYRMAP 457

[Close]

BLAST of CmoCh10G011190 vs. NCBI nr
Match: XP_022938339.1 (uncharacterized protein LOC111444469 [Cucurbita moschata])

HSP 1 Score: 694.9 bits (1792), Expect = 4.1e-196
Identity = 348/378 (92.06%), Postives = 359/378 (94.97%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLK+QQEFAHLVQGGLTVEKYNREFN+LKRFAPSMVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKRQQEFAHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVII QKRPHESG 
Sbjct: 98  MTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIRQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRPPPARRHRSNNR APRWDERRPPR TDRNPRNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPPPARRHRSNNRPAPRWDERRPPRHTDRNPRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNAAAQANP RVVEQTDQPAPPRAQAR Y STSKDT R D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNAAAQANPLRVVEQTDQPAPPRAQARAYASTSKDTGRSD 277

Query: 241 AVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKR 300
            VVTDFDVILGMDWLAENRASIDC +KEVKFSPP  PTFKFK TNTG+TP+VVSMMKAK+
Sbjct: 278 VVVTDFDVILGMDWLAENRASIDCHQKEVKFSPPIGPTFKFKGTNTGITPRVVSMMKAKK 337

Query: 301 LVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTG 360
           LVQQGGWAILAC VDVRGK++TLVNVPIVNEFPDVF D LPGIPPS+AVDFVIELEPGTG
Sbjct: 338 LVQQGGWAILACAVDVRGKEETLVNVPIVNEFPDVFPDDLPGIPPSRAVDFVIELEPGTG 397

Query: 361 PISKAPYRMAPTELKELK 379
           PISKAPY MAP ELKELK
Sbjct: 398 PISKAPYHMAPAELKELK 415

[Close]

BLAST of CmoCh10G011190 vs. NCBI nr
Match: XP_023522446.1 (uncharacterized protein LOC111786377 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 693.7 bits (1789), Expect = 9.0e-196
Identity = 365/476 (76.68%), Postives = 378/476 (79.41%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLK+QQEFAHLVQGGLTVEKYNREFN+LKRFAPSMVDTEEK
Sbjct: 203 MNWERFKEAFLKEYYPKSERLKRQQEFAHLVQGGLTVEKYNREFNKLKRFAPSMVDTEEK 262

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQK PHESG 
Sbjct: 263 MTEKFVLGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKHPHESGG 322

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRPPP  RHRSNNR APRWDER PPRRTDRNPRNQDGARGRR+EGCTICGRLH GRCMA
Sbjct: 323 SDRPPPVCRHRSNNRRAPRWDERHPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMA 382

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQAR YVSTSKDT R D
Sbjct: 383 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARAYVSTSKDTGRSD 442

Query: 241 AVV--------------------------------------------------------- 300
           AVV                                                         
Sbjct: 443 AVVTGTLSILGHFTFTLFDSCSTHSFISMPFVVQAGFELEPLLHEMSVSTPTGVDLVSRG 502

Query: 301 -----------------------TDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFK 360
                                  TDFDVILGMDWLAENRASIDC KK+VKFSPPT P FK
Sbjct: 503 RVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCHKKKVKFSPPTGPIFK 562

Query: 361 FKSTNTGVTPKVVSMMKAKRLVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGL 397
           FK T+TG+TPKVVSMMKAKRLVQQ GWAIL+CVVDVRGK++TLVNVPIVNEFPDVFLD L
Sbjct: 563 FKGTSTGITPKVVSMMKAKRLVQQDGWAILSCVVDVRGKERTLVNVPIVNEFPDVFLDDL 622

[Close]

BLAST of CmoCh10G011190 vs. NCBI nr
Match: XP_022937452.1 (uncharacterized protein LOC111443856 [Cucurbita moschata])

HSP 1 Score: 548.9 bits (1413), Expect = 3.6e-152
Identity = 295/396 (74.49%), Postives = 305/396 (77.02%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           +NWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLT EKYNREFNRLKRFAPSMVDTEEK
Sbjct: 38  VNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGL PRIRRMLEAFNPKTYEEALRTAKALEKPKD+KR EE VIIGQKRPHESG 
Sbjct: 98  MTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
            DRPPPA RHRSNNR APRWDERRPPRRTDRNPRNQDGARGRR+EGCTICGRLH GRCMA
Sbjct: 158 FDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTA NAAAQAN PRVVEQTDQPAPPRAQAR Y STSKDTRR D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRAQARAYASTSKDTRRSD 277

Query: 241 AVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKR 300
           AVVT                                                        
Sbjct: 278 AVVT-------------------------------------------------------- 337

Query: 301 LVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTG 360
                         DVRGK+KT VNVPIVN+FPDVF D LP IPPS+AVD+VIEL+PGT 
Sbjct: 338 --------------DVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTE 363

Query: 361 PISKAPYRMAPTELKELKAQLQDLLDKGFIRPSVSP 397
           PISKAPYRM P ELKELKAQLQDLL+KGFIRPSVSP
Sbjct: 398 PISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSP 363

[Close]

BLAST of CmoCh10G011190 vs. NCBI nr
Match: XP_022931755.1 (uncharacterized protein LOC111438022 [Cucurbita moschata])

HSP 1 Score: 540.4 bits (1391), Expect = 1.3e-149
Identity = 294/390 (75.38%), Postives = 301/390 (77.18%), Query Frame = 0


Query: 1   MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVEKYNREFNRLKRFAPSMVDTEEK 60
           MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTV+KYNREFNRLKRFAP MVDTEEK
Sbjct: 38  MNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTVKKYNREFNRLKRFAPYMVDTEEK 97

Query: 61  MTEKFILGLEPRIRRMLEAFNPKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHESGS 120
           MTEKF+LGL PRIRRMLEAFN KTYEEALRTAKALEKPKDEKRREEPVIIGQKRPH+SG 
Sbjct: 98  MTEKFVLGLVPRIRRMLEAFNLKTYEEALRTAKALEKPKDEKRREEPVIIGQKRPHKSGG 157

Query: 121 SDRPPPARRHRSNNRLAPRWDERRPPRRTDRNPRNQDGARGRRDEGCTICGRLHGGRCMA 180
           SDRP PARRHRSNNR APRWDE+RPPR  DRN RNQDGARGRR+EGCTICGRLHGGRCMA
Sbjct: 158 SDRPLPARRHRSNNRPAPRWDEQRPPRCIDRNHRNQDGARGRREEGCTICGRLHGGRCMA 217

Query: 181 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARTYVSTSKDTRRFD 240
           GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQAR Y STSKDT R D
Sbjct: 218 GSRACYRCGQEGHIAVNCTAGNAAAQANPPRVVEQTDQPAPPRAQARAYASTSKDTGRSD 277

Query: 241 AVVTDFDVILGMDWLAENRASIDCRKKEVKFSPPTEPTFKFKSTNTGVTPKVVSMMKAKR 300
           AVVT                                                        
Sbjct: 278 AVVT-------------------------------------------------------- 337

Query: 301 LVQQGGWAILACVVDVRGKKKTLVNVPIVNEFPDVFLDGLPGIPPSQAVDFVIELEPGTG 360
                         DVRGKKKTLVNVPI NEF DVF D LPGIPPS+AVDF+IELEPGTG
Sbjct: 338 --------------DVRGKKKTLVNVPI-NEFLDVFPDDLPGIPPSRAVDFIIELEPGTG 356

Query: 361 PISKAPYRMAPTELKELKAQLQDLLDKGFI 391
           PISKAPYRMAP ELKELK QLQDLLDKGFI
Sbjct: 398 PISKAPYRMAPVELKELKVQLQDLLDKGFI 356

The following BLAST results are available for this feature:

BLAST of CmoCh10G011190 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G011190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYK0	2.7e-198	81.49	uncharacterized protein LOC111439681 OS=Cucurbita moschata OX=3662 GN=LOC1114396...	[more]
A0A6J1FDT1	2.0e-196	92.06	uncharacterized protein LOC111444469 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A6J1FB91	1.7e-152	74.49	uncharacterized protein LOC111443856 OS=Cucurbita moschata OX=3662 GN=LOC1114438...	[more]
A0A6J1F0C1	6.2e-150	75.38	uncharacterized protein LOC111438022 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]
A0A6J1F4C9	8.7e-120	96.07	uncharacterized protein LOC111440130 OS=Cucurbita moschata OX=3662 GN=LOC1114401...	[more]

BLAST of CmoCh10G011190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933017.1	5.7e-198	81.49	uncharacterized protein LOC111439681 [Cucurbita moschata]	[more]
XP_022938339.1	4.1e-196	92.06	uncharacterized protein LOC111444469 [Cucurbita moschata]	[more]
XP_023522446.1	9.0e-196	76.68	uncharacterized protein LOC111786377 [Cucurbita pepo subsp. pepo]	[more]
XP_022937452.1	3.6e-152	74.49	uncharacterized protein LOC111443856 [Cucurbita moschata]	[more]
XP_022931755.1	1.3e-149	75.38	uncharacterized protein LOC111438022 [Cucurbita moschata]	[more]

BLAST of CmoCh10G011190 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 184..200 e-value: 1.2E-4 score: 31.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 183..199 e-value: 2.0E-6 score: 27.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 185..198 score: 10.394444
None	No IPR available	PFAM	PF08284	RVP_2	coord: 244..274 e-value: 2.8E-8 score: 33.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 343..396 e-value: 8.5E-11 score: 43.9
None	No IPR available	GENE3D	4.10.60.10		coord: 180..225 e-value: 4.6E-7 score: 32.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..166
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 244..396
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 244..396
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 2..70 e-value: 1.3E-11 score: 44.6
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 226..284 e-value: 1.2E-7 score: 33.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 328..396

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011190.1	CmoCh10G011190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding