CmoCh10G010050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G010050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Rho GTPase-activating gacO-like protein
Location	Cmo_Chr10: 5227406 .. 5229587 (-)
RNA-Seq Expression	CmoCh10G010050
Synteny	CmoCh10G010050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGGTCTTCAAGTGACCTTCACCACTGTTTCCCATATCCCAATCCTTCTTAAATCTTCGTTTCATTCTTCACTTTCAATCTTCTTTCAAATCCCCTCTTCAGATCATTCCTTATGCCTCTGTAATTTCCCCTTCTTTTCGCTCTAATCCTCAATCCATGAACACCCACATGGAATTTTCTCTGTTCTTGTGAACTTCTTTTCGTTCTTCAACAGATTCACTGTAATGGGTCCGTTTCAGTGATTCGTATGGCCTTCGTTTCTTATCAGGTTTTTTTTTTCTTTTTTGAATTTGTCTGTTTCTTGTTCTTCTTTCATTTGTTGCTTTTGTTCTTTTCTGCTTTTGTTGCGTATAAAATTGAATTAATCTGTCGATTAACTGTTTCTATTGTTCTAATCTTGTCTTCTACCAATCCGATTCTGTTTCTCTTTGGTGGATCTTGTTTGTCTCTGCTGTTCGGGGATTTTCGAGTTTCTTGGTAGCTTTTACTCTCGATTCTAATATTTGTTTGTGGTTTTGAGATTCTTGTTGCTTCGAATTTGGTTATCTGCGATTGAGATTTGTTCATCTTTCTGGCTCTGTTTAATCCTTACCTAATCAGGGGAAGTCAACTTAGGTTTGAGAAACTTTGCAAGCAAGAACAGCATATTATAGGAACTTCGGCTTTGCTTTAGATTCAATTACATGTGAACTTTAGCTATCAATTGGGAGGAAGTGATATTATAGGGATTTGAACTTAGAATCTGTACTAGTTTGAACAAATCTTAAGTTCATAGGTTAGTATATATTTGATTCTTTCATTTCATCCCTAAAGAATTCAAGGGTCTGTATTCTACTGGTTAGGTTTCCGTGCTGATTAGTTTGAGGAAGTATTGTAATTGCATTAGATGTGTGAGACCCTACATCGGTTGGAGAGGAGAGAACTAAGCATTCTTTGTAAGAGTGTGGAAACCTCTCCCTAGCAGACATGTTTTGAAAACTTTTAGGGAAGCCCAAAAGGGAAAGCGTAAAGAGGACAATATCTGCTAGTGGTAGGCTTTGGCCGTTGCAAATGGTATCAAAGCTAGACCTCGGGCGATGTGCTAGCGAGGAGGTTGAGCTCTGAAAGGGGGTGGACACGAGGCAGTGTGTTAGCAAGGACGCTGAGCCTCAAAGGGGGTAGATTGGGGGGTCCCACATCGATTGGAGATGGGAACGAGTGCCAGCGAGGACGCTGAGCTCCGTAGGGGGTTGGATTGTGAGATCCCGCATTGGTTGGGGAGGAGAACGAAACATTCTCTATAAGGGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAACACCTTGAGGGAAAGCCCAAAGAGGACAGTATCTGCTAGTGGTGGGCTTGGGCTGTTACAAGATGTGTCATGCTTGATGTATAACCATCAGCTGGTTACGATATTCGAGCTTGCCGTGTTTATTTACTTCACGAGTTTCTTATCGCAAGCGAATTGGAATTGTTTCCTATGTAATTGCTTGTTTTGTGTCTGGCAGTTGCAATCTGTTGCATGATTTTTCTTTCTTGGAGTGCTTAAAGAGGATGGGTAGAGGTCGGGGAAAGGGGAGGAAGTTTACCGTGACGAATCACGATGATGCTGGAAGCGGTGAGGAAGAGAAGATCCCTGCACAAAAGCGAAGGGGAAGGCCACAGAAGCCATTGAAGGACGAGATTGACGAGGAGGAAACCGAAAAGATAGAAGACGACGACAGCGAGAACGTGAAAGGCTGTGACATTGTGAGCAAGGAGATGAAAAGCCCACCTGCAGCAGAGAATGGGAAAAGAAGGAGAAGAAGCTCACAAGTGAAAGAAAAGCTCGATCCAGTCAAAGATGAAAATGGGGACGGAACACGGTCGAGCACCGATGAATCAACAAGATCAAATGGATTTCGTCACAACGGAAGCAGGCGAAAAAGCAAGCCCCATCGAGCTGCTGAAGCGGGCGTGAACTGCAGGTAAAACAACCTTAGTGAATGAGGCATAGAGATGTCGTGATAGATTACCATATTTGCTGCGTATTGTTATCTCTAAAGAACTGTTGAATTCAGTATGATCCACTGTGCTTGTTTTATTATTCTTTCTCTCTTCACCATATGTTCTTAACATTACAACAGAATGTTCTAACTAAGAATGAAATGGATCAGCATTCTTTACAATGA

mRNA sequence

ATGGGCAGTTGCAATCTGTTGCATGATTTTTCTTTCTTGGAGTGCTTAAAGAGGATGGGTAGAGGTCGGGGAAAGGGGAGGAAGTTTACCGTGACGAATCACGATGATGCTGGAAGCGGTGAGGAAGAGAAGATCCCTGCACAAAAGCGAAGGGGAAGGCCACAGAAGCCATTGAAGGACGAGATTGACGAGGAGGAAACCGAAAAGATAGAAGACGACGACAGCGAGAACGTGAAAGGCTGTGACATTGTGAGCAAGGAGATGAAAAGCCCACCTGCAGCAGAGAATGGGAAAAGAAGGAGAAGAAGCTCACAAGTGAAAGAAAAGCTCGATCCAGTCAAAGATGAAAATGGGGACGGAACACGGTCGAGCACCGATGAATCAACAAGATCAAATGGATTTCGTCACAACGGAAGCAGGCGAAAAAGCAAGCCCCATCGAGCTGCTGAAGCGGGCGTGAACTGCAGGTAAAACAACCTTAGTGAATGAGGCATAGAGATGTCGTGATAGATTACCATATTTGCTGCGTATTGTTATCTCTAAAGAACTGTTGAATTCAGTATGATCCACTGTGCTTGTTTTATTATTCTTTCTCTCTTCACCATATGTTCTTAACATTACAACAGAATGTTCTAACTAAGAATGAAATGGATCAGCATTCTTTACAATGA

Coding sequence (CDS)

ATGGGCAGTTGCAATCTGTTGCATGATTTTTCTTTCTTGGAGTGCTTAAAGAGGATGGGTAGAGGTCGGGGAAAGGGGAGGAAGTTTACCGTGACGAATCACGATGATGCTGGAAGCGGTGAGGAAGAGAAGATCCCTGCACAAAAGCGAAGGGGAAGGCCACAGAAGCCATTGAAGGACGAGATTGACGAGGAGGAAACCGAAAAGATAGAAGACGACGACAGCGAGAACGTGAAAGGCTGTGACATTGTGAGCAAGGAGATGAAAAGCCCACCTGCAGCAGAGAATGGGAAAAGAAGGAGAAGAAGCTCACAAGTGAAAGAAAAGCTCGATCCAGTCAAAGATGAAAATGGGGACGGAACACGGTCGAGCACCGATGAATCAACAAGATCAAATGGATTTCGTCACAACGGAAGCAGGCGAAAAAGCAAGCCCCATCGAGCTGCTGAAGCGGGCGTGAACTGCAGGTAA

Protein sequence

MGSCNLLHDFSFLECLKRMGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENVKGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNGSRRKSKPHRAAEAGVNCR

Homology

[Close]

BLAST of CmoCh10G010050 vs. ExPASy TrEMBL
Match: A0A6J1H9S1 (uncharacterized protein LOC111461426 OS=Cucurbita moschata OX=3662 GN=LOC111461426 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.5e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV
Sbjct: 1   MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 138
           KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 139 SRRKSKPHRAAEAGVNCR 157
           SRRKSKPHRAAEAGVNCR
Sbjct: 121 SRRKSKPHRAAEAGVNCR 138

[Close]

BLAST of CmoCh10G010050 vs. ExPASy TrEMBL
Match: A0A6J1JCI2 (uncharacterized protein LOC111485534 OS=Cucurbita maxima OX=3661 GN=LOC111485534 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.0e-64
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           MGRGRGKGRK T+TNHDDAGSGEEEKIPAQKRRGRPQKPLKDE+DEEE EKIEDDDSENV
Sbjct: 1   MGRGRGKGRKLTMTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEMDEEEAEKIEDDDSENV 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 138
           KGCDIVSKEMK PPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGCDIVSKEMKGPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 139 SRRKSKPHRAAEAGVNCR 157
           SRRKSKPHRAAEAGVNCR
Sbjct: 121 SRRKSKPHRAAEAGVNCR 138

[Close]

BLAST of CmoCh10G010050 vs. ExPASy TrEMBL
Match: A0A1S3BRW6 (uncharacterized protein LOC103492511 OS=Cucumis melo OX=3656 GN=LOC103492511 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.7e-61
Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           MGRGRGKGRK TVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEE EKIED+DSEN+
Sbjct: 1   MGRGRGKGRKLTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 138
           KG DIVSKEMK+PPAAENGKRRRR+SQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGSDIVSKEMKNPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 139 SRRKSKPHRAAEAGVNCR 157
           SRRKSKP RAAEAGV+C+
Sbjct: 121 SRRKSKPRRAAEAGVSCK 138

[Close]

BLAST of CmoCh10G010050 vs. ExPASy TrEMBL
Match: A0A5A7TJZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00790 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.7e-61
Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           MGRGRGKGRK TVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEE EKIED+DSEN+
Sbjct: 1   MGRGRGKGRKLTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 138
           KG DIVSKEMK+PPAAENGKRRRR+SQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGSDIVSKEMKNPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 139 SRRKSKPHRAAEAGVNCR 157
           SRRKSKP RAAEAGV+C+
Sbjct: 121 SRRKSKPRRAAEAGVSCK 138

[Close]

BLAST of CmoCh10G010050 vs. ExPASy TrEMBL
Match: A0A0A0LXE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G605770 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.7e-61
Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           MGRGRGKGRK TVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEE EKIED+DSEN+
Sbjct: 1   MGRGRGKGRKLTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 138
           KG DIVSKEMK+PPAAENGKRRRR+SQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGSDIVSKEMKNPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 139 SRRKSKPHRAAEAGVNCR 157
           SRRKSKP RAAEAGV+C+
Sbjct: 121 SRRKSKPRRAAEAGVSCK 138

[Close]

BLAST of CmoCh10G010050 vs. TAIR 10
Match: AT3G57930.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 1519 Blast hits to 1241 proteins in 182 species: Archae - 0; Bacteria - 60; Metazoa - 576; Fungi - 133; Plants - 127; Viruses - 30; Other Eukaryotes - 593 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 5.9e-24
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           M RGRGKG++   T  +D GSGEEEKIPA ++RGRPQKP+KDE +EEE E ++  D E  
Sbjct: 1   MRRGRGKGKRQNATAREDRGSGEEEKIPAFRKRGRPQKPVKDE-EEEEEELVKKTDEEED 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSN---GFR 138
           K  D            ENG++R++  + KE  +  ++ENG G++SST++S +S+   GFR
Sbjct: 61  KDDDTNGSVTSKENVTENGRKRKKPVESKES-NITEEENGVGSKSSTEDSMKSSSSIGFR 120

Query: 139 HNGSRRKSKPHRAAEAGVNC 156
            NGSRRK+KP RAAEA V C
Sbjct: 121 QNGSRRKNKPRRAAEAVVEC 138

[Close]

BLAST of CmoCh10G010050 vs. TAIR 10
Match: AT3G57930.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 5.9e-24
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           M RGRGKG++   T  +D GSGEEEKIPA ++RGRPQKP+KDE +EEE E ++  D E  
Sbjct: 1   MRRGRGKGKRQNATAREDRGSGEEEKIPAFRKRGRPQKPVKDE-EEEEEELVKKTDEEED 60

Query: 79  KGCDIVSKEMKSPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSN---GFR 138
           K  D            ENG++R++  + KE  +  ++ENG G++SST++S +S+   GFR
Sbjct: 61  KDDDTNGSVTSKENVTENGRKRKKPVESKES-NITEEENGVGSKSSTEDSMKSSSSIGFR 120

Query: 139 HNGSRRKSKPHRAAEAGVNC 156
            NGSRRK+KP RAAEA V C
Sbjct: 121 QNGSRRKNKPRRAAEAVVEC 138

[Close]

BLAST of CmoCh10G010050 vs. TAIR 10
Match: AT2G42190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57930.2); Has 1381 Blast hits to 1230 proteins in 175 species: Archae - 3; Bacteria - 25; Metazoa - 672; Fungi - 135; Plants - 127; Viruses - 30; Other Eukaryotes - 389 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 7.8e-24
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 19  MGRGRGKGRKFTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEETEKIEDDDSENV 78
           M RGRGKG+K   +  +D GSG+EEKIPA +RRGRPQKP+KD+ +EEE    E+DD E V
Sbjct: 1   MRRGRGKGKKQNASAREDRGSGDEEKIPAYRRRGRPQKPMKDDFEEEE----EEDDEEMV 60

Query: 79  KGCDIVSKEMK---SPPAAENGKRRRRSSQVKEKLDPVKDENGDGTRSSTDESTRSN--G 138
           +  ++  ++ +       +++ K R+R        D  ++ENG G++ +TD+STRS   G
Sbjct: 61  EKMEVEDEDEEIDDGSVTSKDLKERKRKMSNGSNTDLTEEENGLGSKPNTDDSTRSTSIG 120

Query: 139 FRHNGSRRKSKPHRAAEAGVNC 156
           FR NGSRRKSKP RAAEA V C
Sbjct: 121 FRQNGSRRKSKPRRAAEAVVEC 138

The following BLAST results are available for this feature:

BLAST of CmoCh10G010050 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G010050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9S1	7.5e-67	100.00	uncharacterized protein LOC111461426 OS=Cucurbita moschata OX=3662 GN=LOC1114614...	[more]
A0A6J1JCI2	2.0e-64	96.38	uncharacterized protein LOC111485534 OS=Cucurbita maxima OX=3661 GN=LOC111485534...	[more]
A0A1S3BRW6	4.7e-61	92.75	uncharacterized protein LOC103492511 OS=Cucumis melo OX=3656 GN=LOC103492511 PE=...	[more]
A0A5A7TJZ9	4.7e-61	92.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LXE8	4.7e-61	92.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G605770 PE=4 SV=1	[more]

BLAST of CmoCh10G010050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57930.1	5.9e-24	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57930.2	5.9e-24	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G42190.1	7.8e-24	48.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..123
None	No IPR available	PANTHER	PTHR34055	OS09G0491596 PROTEIN	coord: 19..156
None	No IPR available	PANTHER	PTHR34055:SF1	OS09G0491596 PROTEIN	coord: 19..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G010050.1	CmoCh10G010050.1	mRNA