CmoCh10G008730 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTACAGGATTTTGTTCCTGTGTGCTTGCCATCAACCACTGGGGTATTTTCTTTGGACTTTCGTTGTTTTAATGCCCTATATTTAGAATTTTATATTTTATACAAAAAAAAAAAAAAGGTATATACGAAGTTTTCTGCTGAAGCTACCCAGCAAGAGATATGAAAATGATGAGCTGAAGAAATATGGCCAATTTAAAATAAAAATCACAGTTCTATGGCAACTAATAAACCTTTTATCATAAATTGGGAAGTGGTTATATATGAAACAGAAGTTTGAATATTGTGTGTGATGAATTTTTTTCTTGTGGTCTGTTAACTAAAAAACGAGGAAGACACGTGAAAAAAAAATTTTGATCATGAAGAGTAACTATGATACGAGTTCAAACTATTGGTATTCTTTTTTTCTTTTCTTTTTTTTTTTTTTGTTGGTGTTTGTACATTTCTAAGATCAAATGCCACATCAATGGTAATGAAGTCTTAATGTCAGTGTTGACTGTAGCTATGCATAGATATGCTTATTACTTGACCTTAGCAATTGCAAAATATCAGCTAGCTTTTAACTTATCACTAACTTTTGTCTCAGAAAAATGAGAGGATGTTTCATTTATCAGTTAATGCCGAAGGAGCCACAAAGGTATTTTCTTATTATCTTCATGTATTTTAGAGTGCTTTTAGCAAAAGTACTTAATTGCATTTACTTCATTGAAAAGTTTGTTATTCGTAATCAATTTGATGTTTAGTTCTCCACCTTTTCAATAGTACTTTTGAAGTCATCATAGCCTTTTGACTATTTGCAAAAGTATATTTTATGTTACCTTAAAGAATGATGTTGATGTTTTTTAGTGGAAACTGCTTTTTAGCCATTGCGAAAGTGATTTCGACCATGCTAGAAGAACTCTCGGACACAGTCAATGCATTACACGTGATTTATCTTGAACTATTTTTCAATGGTCTTACTTTGGTTGCAGGTGTTGAGCATTGTTGATTCAACTTATCATATTCCAAGTGTCCCTCATTTTGGAGAAAAGAAAAAAGTGGTTCAGAAACAGGAAAAGTTCCTTGATTACAAGGAGAAATTTTCGGTTTTTATATCTTATATTGGTATTTCATTGATCAATTCCGGGCCCGAGGTTTGTATATATATATTTGAACTTAGCTTTCAAAATTTTGTCTCCTACTTTTACGTACGCCAATCCTTCATATTATTTCTATGTAGGAAATGGTGTATGCCTGTGCTAAAAACGTAACTATCGATTTGCTGCAAAGTTTGGATCAACAGAAGTTCTCTGTAAAATTGCTCTCTCTTCAGATAGATAATCAATTTCGGAATAGTCCATATCCTGTTATCTTGTCTTTTGATCAAGAATACAGAAGCAACCCAGTTGGAAGCTTGAACAAGGATATTGGTGCAGTAACAAGAAGTGAAAGATTTTTGCAAGCTGATGGCTCTCTTGAACCTGTAATCTATCTTTATGCATCAAAGTGGCGAAAGACGGATAGTTTACTGGTTTCATTTGAACATATATGCTTAAGGTCCCCATTCTGGCATCTAACATCTTTTGTTAGTATGAAATGCATAGAACTGATCCTTTTCTCTTCAATTCTTGCAGAATATCAGATTTTCGACTTGAGATTGAGCAGCAAGTGATGTTAAGCTTGTTTGAGTTTTTCAAAAATGTCTCATCAAATTTAAAGGGTGAAGTGTCTCAATTTTCAGATGCCATAATGCATCCTCCTGCAAAGGATCCAGCTCATGACTACTTCAGTCCCAGGACTGAACCTCCTCATTTTTCAGAATATCCTGTTTTTGATGGACTCGTTAGAGGCAGCACATTATTACCTTCAGTGGCTCCTATTGGAGCTCCTTGGCAGCAGGTTTATCGCTTAGCAAGACAGCAAAAGAAAGTTTATGTTGAGTTGTTTGATTTGGCGCCTATTAAGTTGACAGTAAGGTATAGACATCATACGAAAAATTATTTTGTATTTTGCTCTCCTCTGCTATCTATCCTAACGAAAGTTTTTCTTGGCCTTAGCTTTTCCACCATTCCATGGGTGCTCAGGAACCCCATCCTTACATCTGGTGAATTACTGATGCATGTAAGTATTTGTGTTCTCTTCTTTTATCGAAGATTGTTGTAACAAAACTCGACTATCTAAAGTAGGCAATTTATCATTTGAAGGAACAATAGGTTGATGCCATGAGCTAAATAATAACTTCTAAAAGATAACAACAAAACCAAAGCTGTATGCTTGCGAGTTCAATCTCTGTATTGGCTTGTCCTTTGGGGAATTTGTGGAAGCATATCAAATTCTGACTTTTGTTTTGAGGGACAAAGGGACAAATGGATATAAAAAATGTGAATGGCCTTTGTGTCCTGAATTTAAAAATGTATGAAACATGAAGACAAGTTTTCTATTCATGCAATCCTACATAGTTTTCTGCATTTTTTCCAGCTCTACCCAACTTGAACACCACTGATTGTTTTATTATATTTAAGCCCTTTGATTGTTTCCTTTTTGGTTTTATAACCATAAATATGCTGTACTTCATTCATAACTCTATATGGGAAAGAGATTAGATATTTCTCAGCTTCCAGTGGTTGTAATCTGTCATACTTGATCAACACCGAATTACAGCGAGGTCTTTTAGCTCTCGGGGACATTGAAGGAGCTCAGATTCATCTCAAGCGCTTGAGTATTGCACATCAAATGGCCAGTTGGGAATCCATTCAAGAGATTCTGATTAGGCATTACTCAAGGCAACTTTTTCATGAGATATATAAGGTAAGCATTTTATTGGCTGTATACCTATTGTGAGAAAGCCTAAGAAAGCTGGTCACATGAACTACTGTGATCAAATTGGTGGTTGTAAGATTAGAAACAAAATCTCCAACTAACTATAAAATCAATAGGCAAGGAGACTCTATAAAATATTAAATACTTATTTCTTAATTCAGATGTAACAAAAATATATTTGTATTCCAATGATTCAGTAGCTTTCTTATGTAGGAGAAAGGCTCAATACATAAAAAGAAAGAAGAATAAGAATAGAATAAAATGGTTGCACTTAGTTAACATGTTCACAACCAACATTATGAGCTTAGTAGTTAGTTGTACTAAAAGGTCGTTTTAGGAGTTGTCTGGATACGTTGGGCCAATTGAATATTAGATTAAATTTGGAATCGTTGGAATCGGGATTCCCCGGAGGTTGCGTATGTTATAATGTGATATACTGGTTAATTGTGTGTACATAACTTATTTCTTTAGCTCTTACTCTATCCTTGAAACTCTCTTTTAGCTCCTTGTTATCACTTTCCTGAATGAATTAGTTGACAAGATATCTCTTTCAATTCATTTTTATTTTATGTCTAATGATGGTTTGCTTGATCCATATTGCTCATATAACAATTTTTTATTTTGGTTTTCATCTAGTCATCTTGTTTTACAATGAAAGATCTTCTCATTCATACTAACAATGCATGGCTACAACCTTAG ATGATGTACAGGATTTTGTTCCTGTGTGCTTGCCATCAACCACTGGGAAAAATGAGAGGATGTTTCATTTATCAGTTAATGCCGAAGGAGCCACAAAGAGTGCTTTTAGCAAAAGTACTTAATTGCATTTACTTCATTGAAAATGGAAACTGCTTTTTAGCCATTGCGAAAGTGATTTCGACCATGCTAGAAGAACTCTCGGACACAGTCAATGCATTACACGTGTTGAGCATTGTTGATTCAACTTATCATATTCCAAGTGTCCCTCATTTTGGAGAAAAGAAAAAAGTGGTTCAGAAACAGGAAAAGTTCCTTGATTACAAGGAGAAATTTTCGGTTTTTATATCTTATATTGGTATTTCATTGATCAATTCCGGGCCCGAGGAAATGGTGTATGCCTGTGCTAAAAACGTAACTATCGATTTGCTGCAAAGTTTGGATCAACAGAAGTTCTCTGTAAAATTGCTCTCTCTTCAGATAGATAATCAATTTCGGAATAGTCCATATCCTGTTATCTTGTCTTTTGATCAAGAATACAGAAGCAACCCAGTTGGAAGCTTGAACAAGGATATTGGTGCAGTAACAAGAAGTGAAAGATTTTTGCAAGCTGATGGCTCTCTTGAACCTGTAATCTATCTTTATGCATCAAAGTGGCGAAAGACGGATAGTTTACTGGTTTCATTTGAACATATATGCTTAAGAATATCAGATTTTCGACTTGAGATTGAGCAGCAAGTGATGTTAAGCTTGTTTGAGTTTTTCAAAAATGTCTCATCAAATTTAAAGGGTGAAGTGTCTCAATTTTCAGATGCCATAATGCATCCTCCTGCAAAGGATCCAGCTCATGACTACTTCAGTCCCAGGACTGAACCTCCTCATTTTTCAGAATATCCTGTTTTTGATGGACTCGTTAGAGGCAGCACATTATTACCTTCAGTGGCTCCTATTGGAGCTCCTTGGCAGCAGGTTTATCGCTTAGCAAGACAGCAAAAGAAAGTTTATGTTGAGTTGTTTGATTTGGCGCCTATTAAGTTGACAGTAAGGTATAGACATCATACGAAAAATTATTTTGTATTTTGCTCTCCTCTGCTATCTATCCTAACGAAAGTTTTTCTTGGCCTTAGCTTTTCCACCATTCCATGGGTGCTCAGGAACCCCATCCTTACATCTGGTGAATTACTGATGCATCGAGGTCTTTTAGCTCTCGGGGACATTGAAGGAGCTCAGATTCATCTCAAGCGCTTGAGTATTGCACATCAAATGGCCAGTTGGGAATCCATTCAAGAGATTCTGATTAGGCATTACTCAAGGCAACTTTTTCATGAGATATATAAGCATTTTATTGGCTGTATACCTATTGTGAGAAAGCCTAAGAAAGCTGGTCACATGAACTACTGTGATCAAATTGGTGATGTAACAAAAATATATTTGTATTCCAATGATTCAGTAGCTTTCTTATGTAGGAGAAAGGCTCAATACATAAAAAGAAAGAAGAATAAGAATAGAATAAAATGGTTGCACTTAGTTAACATGTTCACAACCAACATTATGAGCTTATTAGTTGTACTAAAAGGTCGTTTTAGGAGTTGTCTGGATACGTTGGGCCAATTGAATATTAGATTAAATTTGGAATCGTTGGAATCGGGATTCCCCGGAGGTTGCTCATCTTGTTTTACAATGAAAGATCTTCTCATTCATACTAACAATGCATGGCTACAACCTTAG ATGATGTACAGGATTTTGTTCCTGTGTGCTTGCCATCAACCACTGGGAAAAATGAGAGGATGTTTCATTTATCAGTTAATGCCGAAGGAGCCACAAAGAGTGCTTTTAGCAAAAGTACTTAATTGCATTTACTTCATTGAAAATGGAAACTGCTTTTTAGCCATTGCGAAAGTGATTTCGACCATGCTAGAAGAACTCTCGGACACAGTCAATGCATTACACGTGTTGAGCATTGTTGATTCAACTTATCATATTCCAAGTGTCCCTCATTTTGGAGAAAAGAAAAAAGTGGTTCAGAAACAGGAAAAGTTCCTTGATTACAAGGAGAAATTTTCGGTTTTTATATCTTATATTGGTATTTCATTGATCAATTCCGGGCCCGAGGAAATGGTGTATGCCTGTGCTAAAAACGTAACTATCGATTTGCTGCAAAGTTTGGATCAACAGAAGTTCTCTGTAAAATTGCTCTCTCTTCAGATAGATAATCAATTTCGGAATAGTCCATATCCTGTTATCTTGTCTTTTGATCAAGAATACAGAAGCAACCCAGTTGGAAGCTTGAACAAGGATATTGGTGCAGTAACAAGAAGTGAAAGATTTTTGCAAGCTGATGGCTCTCTTGAACCTGTAATCTATCTTTATGCATCAAAGTGGCGAAAGACGGATAGTTTACTGGTTTCATTTGAACATATATGCTTAAGAATATCAGATTTTCGACTTGAGATTGAGCAGCAAGTGATGTTAAGCTTGTTTGAGTTTTTCAAAAATGTCTCATCAAATTTAAAGGGTGAAGTGTCTCAATTTTCAGATGCCATAATGCATCCTCCTGCAAAGGATCCAGCTCATGACTACTTCAGTCCCAGGACTGAACCTCCTCATTTTTCAGAATATCCTGTTTTTGATGGACTCGTTAGAGGCAGCACATTATTACCTTCAGTGGCTCCTATTGGAGCTCCTTGGCAGCAGGTTTATCGCTTAGCAAGACAGCAAAAGAAAGTTTATGTTGAGTTGTTTGATTTGGCGCCTATTAAGTTGACAGTAAGGTATAGACATCATACGAAAAATTATTTTGTATTTTGCTCTCCTCTGCTATCTATCCTAACGAAAGTTTTTCTTGGCCTTAGCTTTTCCACCATTCCATGGGTGCTCAGGAACCCCATCCTTACATCTGGTGAATTACTGATGCATCGAGGTCTTTTAGCTCTCGGGGACATTGAAGGAGCTCAGATTCATCTCAAGCGCTTGAGTATTGCACATCAAATGGCCAGTTGGGAATCCATTCAAGAGATTCTGATTAGGCATTACTCAAGGCAACTTTTTCATGAGATATATAAGCATTTTATTGGCTGTATACCTATTGTGAGAAAGCCTAAGAAAGCTGGTCACATGAACTACTGTGATCAAATTGGTGATGTAACAAAAATATATTTGTATTCCAATGATTCAGTAGCTTTCTTATGTAGGAGAAAGGCTCAATACATAAAAAGAAAGAAGAATAAGAATAGAATAAAATGGTTGCACTTAGTTAACATGTTCACAACCAACATTATGAGCTTATTAGTTGTACTAAAAGGTCGTTTTAGGAGTTGTCTGGATACGTTGGGCCAATTGAATATTAGATTAAATTTGGAATCGTTGGAATCGGGATTCCCCGGAGGTTGCTCATCTTGTTTTACAATGAAAGATCTTCTCATTCATACTAACAATGCATGGCTACAACCTTAG MMYRILFLCACHQPLGKMRGCFIYQLMPKEPQRVLLAKVLNCIYFIENGNCFLAIAKVISTMLEELSDTVNALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDIGAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLFEFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLPSVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVFLGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEILIRHYSRQLFHEIYKHFIGCIPIVRKPKKAGHMNYCDQIGDVTKIYLYSNDSVAFLCRRKAQYIKRKKNKNRIKWLHLVNMFTTNIMSLLVVLKGRFRSCLDTLGQLNIRLNLESLESGFPGGCSSCFTMKDLLIHTNNAWLQP Homology
BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q07878 (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 2.6e-05 Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q55EI3 (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum OX=44689 GN=vps13E PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 4.5e-05 Identity = 44/196 (22.45%), Postives = 92/196 (46.94%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q5THJ4 (Vacuolar protein sorting-associated protein 13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 7.6e-05 Identity = 39/171 (22.81%), Postives = 73/171 (42.69%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q55FG3 (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum OX=44689 GN=tipC PE=3 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.0e-04 Identity = 46/174 (26.44%), Postives = 84/174 (48.28%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q54LB8 (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 6.5e-04 Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1H814 (uncharacterized protein LOC111461381 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1) HSP 1 Score: 671.0 bits (1730), Expect = 4.4e-189 Identity = 348/386 (90.16%), Postives = 350/386 (90.67%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1HBP0 (uncharacterized protein LOC111461381 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1) HSP 1 Score: 671.0 bits (1730), Expect = 4.4e-189 Identity = 348/386 (90.16%), Postives = 350/386 (90.67%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1H9L9 (uncharacterized protein LOC111461381 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1) HSP 1 Score: 671.0 bits (1730), Expect = 4.4e-189 Identity = 348/386 (90.16%), Postives = 350/386 (90.67%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1JM44 (uncharacterized protein LOC111485823 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1) HSP 1 Score: 666.0 bits (1717), Expect = 1.4e-187 Identity = 345/386 (89.38%), Postives = 348/386 (90.16%), Query Frame = 0
BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1JMV4 (uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1) HSP 1 Score: 666.0 bits (1717), Expect = 1.4e-187 Identity = 345/386 (89.38%), Postives = 348/386 (90.16%), Query Frame = 0
BLAST of CmoCh10G008730 vs. TAIR 10
Match: AT5G24740.1 (Protein of unknown function (DUF1162) ) HSP 1 Score: 307.0 bits (785), Expect = 3.2e-83 Identity = 180/393 (45.80%), Postives = 236/393 (60.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|