CmoCh10G008730 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G008730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionVPS13_C domain-containing protein
LocationCmo_Chr10: 4198798 .. 4202296 (+)
RNA-Seq ExpressionCmoCh10G008730
SyntenyCmoCh10G008730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTACAGGATTTTGTTCCTGTGTGCTTGCCATCAACCACTGGGGTATTTTCTTTGGACTTTCGTTGTTTTAATGCCCTATATTTAGAATTTTATATTTTATACAAAAAAAAAAAAAAGGTATATACGAAGTTTTCTGCTGAAGCTACCCAGCAAGAGATATGAAAATGATGAGCTGAAGAAATATGGCCAATTTAAAATAAAAATCACAGTTCTATGGCAACTAATAAACCTTTTATCATAAATTGGGAAGTGGTTATATATGAAACAGAAGTTTGAATATTGTGTGTGATGAATTTTTTTCTTGTGGTCTGTTAACTAAAAAACGAGGAAGACACGTGAAAAAAAAATTTTGATCATGAAGAGTAACTATGATACGAGTTCAAACTATTGGTATTCTTTTTTTCTTTTCTTTTTTTTTTTTTTGTTGGTGTTTGTACATTTCTAAGATCAAATGCCACATCAATGGTAATGAAGTCTTAATGTCAGTGTTGACTGTAGCTATGCATAGATATGCTTATTACTTGACCTTAGCAATTGCAAAATATCAGCTAGCTTTTAACTTATCACTAACTTTTGTCTCAGAAAAATGAGAGGATGTTTCATTTATCAGTTAATGCCGAAGGAGCCACAAAGGTATTTTCTTATTATCTTCATGTATTTTAGAGTGCTTTTAGCAAAAGTACTTAATTGCATTTACTTCATTGAAAAGTTTGTTATTCGTAATCAATTTGATGTTTAGTTCTCCACCTTTTCAATAGTACTTTTGAAGTCATCATAGCCTTTTGACTATTTGCAAAAGTATATTTTATGTTACCTTAAAGAATGATGTTGATGTTTTTTAGTGGAAACTGCTTTTTAGCCATTGCGAAAGTGATTTCGACCATGCTAGAAGAACTCTCGGACACAGTCAATGCATTACACGTGATTTATCTTGAACTATTTTTCAATGGTCTTACTTTGGTTGCAGGTGTTGAGCATTGTTGATTCAACTTATCATATTCCAAGTGTCCCTCATTTTGGAGAAAAGAAAAAAGTGGTTCAGAAACAGGAAAAGTTCCTTGATTACAAGGAGAAATTTTCGGTTTTTATATCTTATATTGGTATTTCATTGATCAATTCCGGGCCCGAGGTTTGTATATATATATTTGAACTTAGCTTTCAAAATTTTGTCTCCTACTTTTACGTACGCCAATCCTTCATATTATTTCTATGTAGGAAATGGTGTATGCCTGTGCTAAAAACGTAACTATCGATTTGCTGCAAAGTTTGGATCAACAGAAGTTCTCTGTAAAATTGCTCTCTCTTCAGATAGATAATCAATTTCGGAATAGTCCATATCCTGTTATCTTGTCTTTTGATCAAGAATACAGAAGCAACCCAGTTGGAAGCTTGAACAAGGATATTGGTGCAGTAACAAGAAGTGAAAGATTTTTGCAAGCTGATGGCTCTCTTGAACCTGTAATCTATCTTTATGCATCAAAGTGGCGAAAGACGGATAGTTTACTGGTTTCATTTGAACATATATGCTTAAGGTCCCCATTCTGGCATCTAACATCTTTTGTTAGTATGAAATGCATAGAACTGATCCTTTTCTCTTCAATTCTTGCAGAATATCAGATTTTCGACTTGAGATTGAGCAGCAAGTGATGTTAAGCTTGTTTGAGTTTTTCAAAAATGTCTCATCAAATTTAAAGGGTGAAGTGTCTCAATTTTCAGATGCCATAATGCATCCTCCTGCAAAGGATCCAGCTCATGACTACTTCAGTCCCAGGACTGAACCTCCTCATTTTTCAGAATATCCTGTTTTTGATGGACTCGTTAGAGGCAGCACATTATTACCTTCAGTGGCTCCTATTGGAGCTCCTTGGCAGCAGGTTTATCGCTTAGCAAGACAGCAAAAGAAAGTTTATGTTGAGTTGTTTGATTTGGCGCCTATTAAGTTGACAGTAAGGTATAGACATCATACGAAAAATTATTTTGTATTTTGCTCTCCTCTGCTATCTATCCTAACGAAAGTTTTTCTTGGCCTTAGCTTTTCCACCATTCCATGGGTGCTCAGGAACCCCATCCTTACATCTGGTGAATTACTGATGCATGTAAGTATTTGTGTTCTCTTCTTTTATCGAAGATTGTTGTAACAAAACTCGACTATCTAAAGTAGGCAATTTATCATTTGAAGGAACAATAGGTTGATGCCATGAGCTAAATAATAACTTCTAAAAGATAACAACAAAACCAAAGCTGTATGCTTGCGAGTTCAATCTCTGTATTGGCTTGTCCTTTGGGGAATTTGTGGAAGCATATCAAATTCTGACTTTTGTTTTGAGGGACAAAGGGACAAATGGATATAAAAAATGTGAATGGCCTTTGTGTCCTGAATTTAAAAATGTATGAAACATGAAGACAAGTTTTCTATTCATGCAATCCTACATAGTTTTCTGCATTTTTTCCAGCTCTACCCAACTTGAACACCACTGATTGTTTTATTATATTTAAGCCCTTTGATTGTTTCCTTTTTGGTTTTATAACCATAAATATGCTGTACTTCATTCATAACTCTATATGGGAAAGAGATTAGATATTTCTCAGCTTCCAGTGGTTGTAATCTGTCATACTTGATCAACACCGAATTACAGCGAGGTCTTTTAGCTCTCGGGGACATTGAAGGAGCTCAGATTCATCTCAAGCGCTTGAGTATTGCACATCAAATGGCCAGTTGGGAATCCATTCAAGAGATTCTGATTAGGCATTACTCAAGGCAACTTTTTCATGAGATATATAAGGTAAGCATTTTATTGGCTGTATACCTATTGTGAGAAAGCCTAAGAAAGCTGGTCACATGAACTACTGTGATCAAATTGGTGGTTGTAAGATTAGAAACAAAATCTCCAACTAACTATAAAATCAATAGGCAAGGAGACTCTATAAAATATTAAATACTTATTTCTTAATTCAGATGTAACAAAAATATATTTGTATTCCAATGATTCAGTAGCTTTCTTATGTAGGAGAAAGGCTCAATACATAAAAAGAAAGAAGAATAAGAATAGAATAAAATGGTTGCACTTAGTTAACATGTTCACAACCAACATTATGAGCTTAGTAGTTAGTTGTACTAAAAGGTCGTTTTAGGAGTTGTCTGGATACGTTGGGCCAATTGAATATTAGATTAAATTTGGAATCGTTGGAATCGGGATTCCCCGGAGGTTGCGTATGTTATAATGTGATATACTGGTTAATTGTGTGTACATAACTTATTTCTTTAGCTCTTACTCTATCCTTGAAACTCTCTTTTAGCTCCTTGTTATCACTTTCCTGAATGAATTAGTTGACAAGATATCTCTTTCAATTCATTTTTATTTTATGTCTAATGATGGTTTGCTTGATCCATATTGCTCATATAACAATTTTTTATTTTGGTTTTCATCTAGTCATCTTGTTTTACAATGAAAGATCTTCTCATTCATACTAACAATGCATGGCTACAACCTTAG

mRNA sequence

ATGATGTACAGGATTTTGTTCCTGTGTGCTTGCCATCAACCACTGGGAAAAATGAGAGGATGTTTCATTTATCAGTTAATGCCGAAGGAGCCACAAAGAGTGCTTTTAGCAAAAGTACTTAATTGCATTTACTTCATTGAAAATGGAAACTGCTTTTTAGCCATTGCGAAAGTGATTTCGACCATGCTAGAAGAACTCTCGGACACAGTCAATGCATTACACGTGTTGAGCATTGTTGATTCAACTTATCATATTCCAAGTGTCCCTCATTTTGGAGAAAAGAAAAAAGTGGTTCAGAAACAGGAAAAGTTCCTTGATTACAAGGAGAAATTTTCGGTTTTTATATCTTATATTGGTATTTCATTGATCAATTCCGGGCCCGAGGAAATGGTGTATGCCTGTGCTAAAAACGTAACTATCGATTTGCTGCAAAGTTTGGATCAACAGAAGTTCTCTGTAAAATTGCTCTCTCTTCAGATAGATAATCAATTTCGGAATAGTCCATATCCTGTTATCTTGTCTTTTGATCAAGAATACAGAAGCAACCCAGTTGGAAGCTTGAACAAGGATATTGGTGCAGTAACAAGAAGTGAAAGATTTTTGCAAGCTGATGGCTCTCTTGAACCTGTAATCTATCTTTATGCATCAAAGTGGCGAAAGACGGATAGTTTACTGGTTTCATTTGAACATATATGCTTAAGAATATCAGATTTTCGACTTGAGATTGAGCAGCAAGTGATGTTAAGCTTGTTTGAGTTTTTCAAAAATGTCTCATCAAATTTAAAGGGTGAAGTGTCTCAATTTTCAGATGCCATAATGCATCCTCCTGCAAAGGATCCAGCTCATGACTACTTCAGTCCCAGGACTGAACCTCCTCATTTTTCAGAATATCCTGTTTTTGATGGACTCGTTAGAGGCAGCACATTATTACCTTCAGTGGCTCCTATTGGAGCTCCTTGGCAGCAGGTTTATCGCTTAGCAAGACAGCAAAAGAAAGTTTATGTTGAGTTGTTTGATTTGGCGCCTATTAAGTTGACAGTAAGGTATAGACATCATACGAAAAATTATTTTGTATTTTGCTCTCCTCTGCTATCTATCCTAACGAAAGTTTTTCTTGGCCTTAGCTTTTCCACCATTCCATGGGTGCTCAGGAACCCCATCCTTACATCTGGTGAATTACTGATGCATCGAGGTCTTTTAGCTCTCGGGGACATTGAAGGAGCTCAGATTCATCTCAAGCGCTTGAGTATTGCACATCAAATGGCCAGTTGGGAATCCATTCAAGAGATTCTGATTAGGCATTACTCAAGGCAACTTTTTCATGAGATATATAAGCATTTTATTGGCTGTATACCTATTGTGAGAAAGCCTAAGAAAGCTGGTCACATGAACTACTGTGATCAAATTGGTGATGTAACAAAAATATATTTGTATTCCAATGATTCAGTAGCTTTCTTATGTAGGAGAAAGGCTCAATACATAAAAAGAAAGAAGAATAAGAATAGAATAAAATGGTTGCACTTAGTTAACATGTTCACAACCAACATTATGAGCTTATTAGTTGTACTAAAAGGTCGTTTTAGGAGTTGTCTGGATACGTTGGGCCAATTGAATATTAGATTAAATTTGGAATCGTTGGAATCGGGATTCCCCGGAGGTTGCTCATCTTGTTTTACAATGAAAGATCTTCTCATTCATACTAACAATGCATGGCTACAACCTTAG

Coding sequence (CDS)

ATGATGTACAGGATTTTGTTCCTGTGTGCTTGCCATCAACCACTGGGAAAAATGAGAGGATGTTTCATTTATCAGTTAATGCCGAAGGAGCCACAAAGAGTGCTTTTAGCAAAAGTACTTAATTGCATTTACTTCATTGAAAATGGAAACTGCTTTTTAGCCATTGCGAAAGTGATTTCGACCATGCTAGAAGAACTCTCGGACACAGTCAATGCATTACACGTGTTGAGCATTGTTGATTCAACTTATCATATTCCAAGTGTCCCTCATTTTGGAGAAAAGAAAAAAGTGGTTCAGAAACAGGAAAAGTTCCTTGATTACAAGGAGAAATTTTCGGTTTTTATATCTTATATTGGTATTTCATTGATCAATTCCGGGCCCGAGGAAATGGTGTATGCCTGTGCTAAAAACGTAACTATCGATTTGCTGCAAAGTTTGGATCAACAGAAGTTCTCTGTAAAATTGCTCTCTCTTCAGATAGATAATCAATTTCGGAATAGTCCATATCCTGTTATCTTGTCTTTTGATCAAGAATACAGAAGCAACCCAGTTGGAAGCTTGAACAAGGATATTGGTGCAGTAACAAGAAGTGAAAGATTTTTGCAAGCTGATGGCTCTCTTGAACCTGTAATCTATCTTTATGCATCAAAGTGGCGAAAGACGGATAGTTTACTGGTTTCATTTGAACATATATGCTTAAGAATATCAGATTTTCGACTTGAGATTGAGCAGCAAGTGATGTTAAGCTTGTTTGAGTTTTTCAAAAATGTCTCATCAAATTTAAAGGGTGAAGTGTCTCAATTTTCAGATGCCATAATGCATCCTCCTGCAAAGGATCCAGCTCATGACTACTTCAGTCCCAGGACTGAACCTCCTCATTTTTCAGAATATCCTGTTTTTGATGGACTCGTTAGAGGCAGCACATTATTACCTTCAGTGGCTCCTATTGGAGCTCCTTGGCAGCAGGTTTATCGCTTAGCAAGACAGCAAAAGAAAGTTTATGTTGAGTTGTTTGATTTGGCGCCTATTAAGTTGACAGTAAGGTATAGACATCATACGAAAAATTATTTTGTATTTTGCTCTCCTCTGCTATCTATCCTAACGAAAGTTTTTCTTGGCCTTAGCTTTTCCACCATTCCATGGGTGCTCAGGAACCCCATCCTTACATCTGGTGAATTACTGATGCATCGAGGTCTTTTAGCTCTCGGGGACATTGAAGGAGCTCAGATTCATCTCAAGCGCTTGAGTATTGCACATCAAATGGCCAGTTGGGAATCCATTCAAGAGATTCTGATTAGGCATTACTCAAGGCAACTTTTTCATGAGATATATAAGCATTTTATTGGCTGTATACCTATTGTGAGAAAGCCTAAGAAAGCTGGTCACATGAACTACTGTGATCAAATTGGTGATGTAACAAAAATATATTTGTATTCCAATGATTCAGTAGCTTTCTTATGTAGGAGAAAGGCTCAATACATAAAAAGAAAGAAGAATAAGAATAGAATAAAATGGTTGCACTTAGTTAACATGTTCACAACCAACATTATGAGCTTATTAGTTGTACTAAAAGGTCGTTTTAGGAGTTGTCTGGATACGTTGGGCCAATTGAATATTAGATTAAATTTGGAATCGTTGGAATCGGGATTCCCCGGAGGTTGCTCATCTTGTTTTACAATGAAAGATCTTCTCATTCATACTAACAATGCATGGCTACAACCTTAG

Protein sequence

MMYRILFLCACHQPLGKMRGCFIYQLMPKEPQRVLLAKVLNCIYFIENGNCFLAIAKVISTMLEELSDTVNALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDIGAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLFEFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLPSVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVFLGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEILIRHYSRQLFHEIYKHFIGCIPIVRKPKKAGHMNYCDQIGDVTKIYLYSNDSVAFLCRRKAQYIKRKKNKNRIKWLHLVNMFTTNIMSLLVVLKGRFRSCLDTLGQLNIRLNLESLESGFPGGCSSCFTMKDLLIHTNNAWLQP
Homology
BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q07878 (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-05
Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 0

Query: 98   VQKQEKFLDYKEKFSVFISY--IGISLINSGPEEMVYACAKNVTIDLLQSLDQQKFSVKL 157
            VQK E   D K    + +S+  +GISLIN   +E++Y   + + +   +S   Q FS K+
Sbjct: 2573 VQKDE---DEKVNTQIVVSFKGVGISLINGRLQELLYINMRGIELRYNESKAYQTFSWKM 2632

Query: 158  LSLQIDNQ-----FRNSPYPVILSF-DQEYRSNPV--GSLNKDIGAVTRSERFLQADGSL 217
              +QIDNQ     + N  YP  + + ++E  ++PV  GS++K              + SL
Sbjct: 2633 KWMQIDNQLFSGNYSNILYPTEIPYTEKEIENHPVISGSISK-------------VNDSL 2692

Query: 218  EPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLFEFFK 256
            + V Y               F+H+ L I +F +++++ ++ ++ +F K
Sbjct: 2693 QAVPY---------------FKHVTLLIQEFSIQLDEDMLYAMMDFIK 2709

BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q55EI3 (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum OX=44689 GN=vps13E PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-05
Identity = 44/196 (22.45%), Postives = 92/196 (46.94%), Query Frame = 0

Query: 65   ELSDTVNALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLIN 124
            E +D  N + + +IV++      +    +    + K E+  + ++ F +  + IGIS+IN
Sbjct: 3166 EFNDDHNPVVIKAIVEADESTRVLTLSDKTSFQISKYEE-ENLRQSFRIHFTGIGISVIN 3225

Query: 125  SGPEEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQF-RNSPY--PVILSFDQEYRS 184
            + P E++Y    ++  +   S   QK  +K+ ++Q+DNQ  + +PY  PV+L  D    +
Sbjct: 3226 ANPTELLYVSIHDILCEYFISSFLQKLEMKITNIQVDNQLSKVTPYSHPVLLFADNLLPN 3285

Query: 185  NPVGSLNKDIGAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLE 244
             P                FLQ       V  + + K +  D     + H+ L++ +  ++
Sbjct: 3286 TP----------------FLQ-------VRIVRSMKMKNID----YYHHVSLKMQELNIK 3333

Query: 245  IEQQVMLSLFEFFKNV 258
            +E++ +  L +FF ++
Sbjct: 3346 VEEKFLYVLLDFFNSL 3333

BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q5THJ4 (Vacuolar protein sorting-associated protein 13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 7.6e-05
Identity = 39/171 (22.81%), Postives = 73/171 (42.69%), Query Frame = 0

Query: 118  IGISLINSGPEEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQ 177
            IG+SLIN  PEE+V+A    + +   Q        + +  +Q+DNQ   +  P +L    
Sbjct: 3837 IGLSLINKVPEELVFASLTGINVHYTQLATSHMLELSIQDVQVDNQLIGTTQPFMLYV-- 3896

Query: 178  EYRSNPVGSLNKDIGAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISD 237
                 P+ + N+ I                 P + + A K+    +L   ++H+ +    
Sbjct: 3897 ----TPLSNENEVI--------------ETGPAVQVNAVKFPSKSALTNIYKHLMITAQR 3956

Query: 238  FRLEIEQQVMLSLFEFFKNVSSNLKGEVSQFSDAIMHPPAKD---PAHDYF 286
            F ++IE++++L L  FF       + EV ++ + +    A+    P   YF
Sbjct: 3957 FTVQIEEKLLLKLLSFFG--YDQAESEVEKYDENLHEKTAEQGGTPIRYYF 3985

BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q55FG3 (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum OX=44689 GN=tipC PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-04
Identity = 46/174 (26.44%), Postives = 84/174 (48.28%), Query Frame = 0

Query: 105  LDYKEKFSVFISYIGISLINSGP--EEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDN 164
            L+ K +FS+ +S IGIS+IN  P  EE+VY     + +++ QS   Q    K+  LQID+
Sbjct: 3230 LNVKYEFSIDLSNIGISIINKIPTREEIVYLSIDGLKLEVKQSKLDQYIQFKVDDLQIDD 3289

Query: 165  QFRNSPYPVIL--------SFDQE--YRSNPVGSLNKDIGAVTR--SERFLQADGSLEPV 224
            Q  ++ +PV L        S +Q+   +S+   S N      T   +         L+P 
Sbjct: 3290 QRYSTNFPVFLCQSKKINHSINQQPNQQSSSPQSTNTTTTTTTNTTTTNNTTQQQKLKPF 3349

Query: 225  IYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLFEFFKNVSSNLKGE 265
            +   A++  K  +++  F +  + I +F + +++  +L+   F  N++ N   E
Sbjct: 3350 LQFSATRTLKYSNIMF-FRYFSILIQEFDINLDEASILNALSFI-NINLNSLNE 3401

BLAST of CmoCh10G008730 vs. ExPASy Swiss-Prot
Match: Q54LB8 (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.5e-04
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 111  FSVFISYIGISLINSGPEEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYP 170
            F++  S IG S+I+  P+E+ Y   K+  I   QS  +    VKL  LQIDNQ   + +P
Sbjct: 2784 FNIRCSGIGCSIIDKTPKELAYISMKDFLIIATQSSIENTVEVKLAELQIDNQLIKTDFP 2843

Query: 171  VIL---SFDQEYRSN 183
            V++   S D+E+R +
Sbjct: 2844 VLIHTVSPDKEHRKD 2858

BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1H814 (uncharacterized protein LOC111461381 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 4.4e-189
Identity = 348/386 (90.16%), Postives = 350/386 (90.67%), Query Frame = 0

Query: 72   ALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 131
            A  VLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV
Sbjct: 2790 ATKVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 2849

Query: 132  YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 191
            YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI
Sbjct: 2850 YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 2909

Query: 192  GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 251
            GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF
Sbjct: 2910 GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 2969

Query: 252  EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 311
            EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP
Sbjct: 2970 EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 3029

Query: 312  SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVF 371
            SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTV                        
Sbjct: 3030 SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTV------------------------ 3089

Query: 372  LGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 431
               SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL
Sbjct: 3090 ---SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 3147

Query: 432  IRHYSRQLFHEIYKHFIGCIPIVRKP 458
            IRHYSRQLFHEIYK F G   ++  P
Sbjct: 3150 IRHYSRQLFHEIYKVF-GSAGVIGNP 3147

BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1HBP0 (uncharacterized protein LOC111461381 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 4.4e-189
Identity = 348/386 (90.16%), Postives = 350/386 (90.67%), Query Frame = 0

Query: 72   ALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 131
            A  VLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV
Sbjct: 2376 ATKVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 2435

Query: 132  YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 191
            YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI
Sbjct: 2436 YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 2495

Query: 192  GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 251
            GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF
Sbjct: 2496 GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 2555

Query: 252  EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 311
            EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP
Sbjct: 2556 EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 2615

Query: 312  SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVF 371
            SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTV                        
Sbjct: 2616 SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTV------------------------ 2675

Query: 372  LGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 431
               SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL
Sbjct: 2676 ---SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 2733

Query: 432  IRHYSRQLFHEIYKHFIGCIPIVRKP 458
            IRHYSRQLFHEIYK F G   ++  P
Sbjct: 2736 IRHYSRQLFHEIYKVF-GSAGVIGNP 2733

BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1H9L9 (uncharacterized protein LOC111461381 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 4.4e-189
Identity = 348/386 (90.16%), Postives = 350/386 (90.67%), Query Frame = 0

Query: 72   ALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 131
            A  VLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV
Sbjct: 2391 ATKVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 2450

Query: 132  YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 191
            YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI
Sbjct: 2451 YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 2510

Query: 192  GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 251
            GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF
Sbjct: 2511 GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 2570

Query: 252  EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 311
            EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP
Sbjct: 2571 EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 2630

Query: 312  SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVF 371
            SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTV                        
Sbjct: 2631 SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTV------------------------ 2690

Query: 372  LGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 431
               SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL
Sbjct: 2691 ---SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 2748

Query: 432  IRHYSRQLFHEIYKHFIGCIPIVRKP 458
            IRHYSRQLFHEIYK F G   ++  P
Sbjct: 2751 IRHYSRQLFHEIYKVF-GSAGVIGNP 2748

BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1JM44 (uncharacterized protein LOC111485823 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 1.4e-187
Identity = 345/386 (89.38%), Postives = 348/386 (90.16%), Query Frame = 0

Query: 72   ALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 131
            A  VLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV
Sbjct: 2391 ATKVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 2450

Query: 132  YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 191
            YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNP+GSLNKDI
Sbjct: 2451 YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPIGSLNKDI 2510

Query: 192  GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 251
            GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF
Sbjct: 2511 GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 2570

Query: 252  EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 311
            EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFD LVRGSTLLP
Sbjct: 2571 EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDRLVRGSTLLP 2630

Query: 312  SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVF 371
            SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIK TV                        
Sbjct: 2631 SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKFTV------------------------ 2690

Query: 372  LGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 431
               SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL
Sbjct: 2691 ---SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 2748

Query: 432  IRHYSRQLFHEIYKHFIGCIPIVRKP 458
            IRHYSRQLFHEIYK F G   ++  P
Sbjct: 2751 IRHYSRQLFHEIYKVF-GSAGVIGNP 2748

BLAST of CmoCh10G008730 vs. ExPASy TrEMBL
Match: A0A6J1JMV4 (uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 1.4e-187
Identity = 345/386 (89.38%), Postives = 348/386 (90.16%), Query Frame = 0

Query: 72   ALHVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 131
            A  VLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV
Sbjct: 2790 ATKVLSIVDSTYHIPSVPHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINSGPEEMV 2849

Query: 132  YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVGSLNKDI 191
            YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNP+GSLNKDI
Sbjct: 2850 YACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPIGSLNKDI 2909

Query: 192  GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 251
            GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF
Sbjct: 2910 GAVTRSERFLQADGSLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQQVMLSLF 2969

Query: 252  EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLVRGSTLLP 311
            EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFD LVRGSTLLP
Sbjct: 2970 EFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDRLVRGSTLLP 3029

Query: 312  SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLLSILTKVF 371
            SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIK TV                        
Sbjct: 3030 SVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKFTV------------------------ 3089

Query: 372  LGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 431
               SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL
Sbjct: 3090 ---SFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASWESIQEIL 3147

Query: 432  IRHYSRQLFHEIYKHFIGCIPIVRKP 458
            IRHYSRQLFHEIYK F G   ++  P
Sbjct: 3150 IRHYSRQLFHEIYKVF-GSAGVIGNP 3147

BLAST of CmoCh10G008730 vs. TAIR 10
Match: AT5G24740.1 (Protein of unknown function (DUF1162) )

HSP 1 Score: 307.0 bits (785), Expect = 3.2e-83
Identity = 180/393 (45.80%), Postives = 236/393 (60.05%), Query Frame = 0

Query: 72   ALHVLSIVDSTYH-IPSV-----PHFGEKKKVVQKQEKFLDYKEKFSVFISYIGISLINS 131
            A  V S+VDS YH I  +       F EK K   + +  + Y E F + +  IGISL+NS
Sbjct: 2752 ATKVFSVVDSGYHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFLLVLPSIGISLVNS 2811

Query: 132  GPEEMVYACAKNVTIDLLQSLDQQKFSVKLLSLQIDNQFRNSPYPVILSFDQEYRSNPVG 191
             P+E+VYACA NV ++L QS+DQQK S ++ SLQIDN  +NS YPVILSF+ ++   P  
Sbjct: 2812 HPQELVYACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVILSFNHDHEVIPPD 2871

Query: 192  SLNKDIGAVTRSERFLQADG-SLEPVIYLYASKWRKTDSLLVSFEHICLRISDFRLEIEQ 251
               K+  A+  SE   Q  G S + V+Y+  +KWRK D  LVSFE+I +RI +F LE+E 
Sbjct: 2872 WGMKNNKAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGLELEL 2931

Query: 252  QVMLSLFEFFKNVSSNLKGEVSQFSDAIMHPPAKDPAHDYFSPRTEPPHFSEYPVFDGLV 311
            Q +LSL EF K V  N +  +   SD  + P   D      S   + PH    PVF+   
Sbjct: 2932 QTLLSLLEFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSE-DTPHARNIPVFNKNQ 2991

Query: 312  RGSTLLPSVAPIGAPWQQVYRLARQQKKVYVELFDLAPIKLTVRYRHHTKNYFVFCSPLL 371
            R    LP V PIGAPWQ ++ LAR+++K+YVE FDLAPI+ T                  
Sbjct: 2992 RSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFT------------------ 3051

Query: 372  SILTKVFLGLSFSTIPWVLRNPILTSGELLMHRGLLALGDIEGAQIHLKRLSIAHQMASW 431
                     LSF + PW+LRN ILTSGE L+HRGL+AL D+EGA+IHLK+L+IAHQ+ SW
Sbjct: 3052 ---------LSFCSAPWMLRNGILTSGESLIHRGLMALADVEGARIHLKQLTIAHQITSW 3111

Query: 432  ESIQEILIRHYSRQLFHEIYKHFIGCIPIVRKP 458
            ES QEIL+ HY+RQ+ HEIYK F G   ++  P
Sbjct: 3112 ESFQEILVGHYTRQILHEIYKVF-GSAGVIGNP 3115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q078782.6e-0526.79Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (stra... [more]
Q55EI34.5e-0522.45Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoi... [more]
Q5THJ47.6e-0522.81Vacuolar protein sorting-associated protein 13D OS=Homo sapiens OX=9606 GN=VPS13... [more]
Q55FG31.0e-0426.44Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoi... [more]
Q54LB86.5e-0437.33Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoi... [more]
Match NameE-valueIdentityDescription
A0A6J1H8144.4e-18990.16uncharacterized protein LOC111461381 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HBP04.4e-18990.16uncharacterized protein LOC111461381 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1H9L94.4e-18990.16uncharacterized protein LOC111461381 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JM441.4e-18789.38uncharacterized protein LOC111485823 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JMV41.4e-18789.38uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT5G24740.13.2e-8345.80Protein of unknown function (DUF1162) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 333..445
e-value: 1.3E-9
score: 38.1
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 71..445

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G008730.1CmoCh10G008730.1mRNA