CmoCh10G007800 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G007800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRep-A_N domain-containing protein
LocationCmo_Chr10: 3622585 .. 3623518 (-)
RNA-Seq ExpressionCmoCh10G007800
SyntenyCmoCh10G007800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGATGAAAGCGCCATGGATGAATGGAATATTAAACAGGTGAGAGAGAGGAGAGGTAGGGAAATGAAGAAAATGATAGGTGAAAGAAGTTAAAATGTTTAAATCCATACATTTATTACTTTTAGCAGCTTGCAGCAAAAAATGATGGATGAAGATTAATGCAGAAACAAAGAATTACAACTCAACCACGCTTGACCGGATCGAAGTTGGAGACGCCTATCACAGCCCCCAATATGGCCACCACCACAGTTCCACCGGCAGCAATGCTGAGCAAGAAGTTCTTCAGCGACGGTGAGACTCCAGGTCCTGCAGCCTCTGCAACCTCCGGAATTACCATCGACGCCGTCAGAGCTGCGGCGGTTAGTCCAGTGATGGCCTTCTCCTTCAAGGACGATCGGACTGCGACGAGCCTCCCGCTAGATGTCGGCGCGGCGGCGATGGCCTTGCGAGACCTCGAAGAAGAAGAAGCAGGCAATGGATTGAAGAAGGCGTGGTTGGACAGTCTCTTGTGGGTGGCGTTAGTCAATGGCAGGGCCAGTGAAACTGTAGAAGTGGAAGCCATTGATATGATTCGAAAGCTCTGCGAATTTCCGGAATTGGGGATTTTGGTTTCGGAAGTGGGCCAAGGAAGTAGAAAAGCGGTGGAGAGGCGGAAATTGGGGAGATTTTGGGAGAGCTCGAAATCTTCATCTCTATCCGACGTGGCAACTTCTTTATGCCTTATTGGCGGATAGCCTTATCCTATTCGTCGTTTTTTTGTTTTATTTGTCTTTAAAGTGGAAGCCATTGATTAGATGTTACTTTTATTCTCTCTCTTTTTTTTTTTCTTAGTTTTATTTTAGATTAAATTACCAATTTAGTTTCTTAAATTTGAACTGTGTACCTACCAACTCTCTGAAATTCTAAAACTATCCTAAAAATTTAGTTTCAG

mRNA sequence

ATGTATGATGAAAGCGCCATGGATGAATGGAATATTAAACAGAAACAAAGAATTACAACTCAACCACGCTTGACCGGATCGAAGTTGGAGACGCCTATCACAGCCCCCAATATGGCCACCACCACAGTTCCACCGGCAGCAATGCTGAGCAAGAAGTTCTTCAGCGACGGTGAGACTCCAGGTCCTGCAGCCTCTGCAACCTCCGGAATTACCATCGACGCCGTCAGAGCTGCGGCGGTTAGTCCAGTGATGGCCTTCTCCTTCAAGGACGATCGGACTGCGACGAGCCTCCCGCTAGATGTCGGCGCGGCGGCGATGGCCTTGCGAGACCTCGAAGAAGAAGAAGCAGGCAATGGATTGAAGAAGGCGTGGTTGGACAGTCTCTTGTGGGTGGCGTTAGTCAATGGCAGGGCCAGTGAAACTGTAGAAGTGGAAGCCATTGATATGATTCGAAAGCTCTGCGAATTTCCGGAATTGGGGATTTTGGTTTCGGAAGTGGGCCAAGGAAGTAGAAAAGCGGTGGAGAGGCGGAAATTGGGGAGATTTTGGGAGAGCTCGAAATCTTCATCTCTATCCGACGTGGCAACTTCTTTATGCCTTATTGGCGGATAGCCTTATCCTATTCGTCGTTTTTTTGTTTTATTTGTCTTTAAAGTGGAAGCCATTGATTAGATGTTACTTTTATTCTCTCTCTTTTTTTTTTTCTTAGTTTTATTTTAGATTAAATTACCAATTTAGTTTCTTAAATTTGAACTGTGTACCTACCAACTCTCTGAAATTCTAAAACTATCCTAAAAATTTAGTTTCAG

Coding sequence (CDS)

ATGTATGATGAAAGCGCCATGGATGAATGGAATATTAAACAGAAACAAAGAATTACAACTCAACCACGCTTGACCGGATCGAAGTTGGAGACGCCTATCACAGCCCCCAATATGGCCACCACCACAGTTCCACCGGCAGCAATGCTGAGCAAGAAGTTCTTCAGCGACGGTGAGACTCCAGGTCCTGCAGCCTCTGCAACCTCCGGAATTACCATCGACGCCGTCAGAGCTGCGGCGGTTAGTCCAGTGATGGCCTTCTCCTTCAAGGACGATCGGACTGCGACGAGCCTCCCGCTAGATGTCGGCGCGGCGGCGATGGCCTTGCGAGACCTCGAAGAAGAAGAAGCAGGCAATGGATTGAAGAAGGCGTGGTTGGACAGTCTCTTGTGGGTGGCGTTAGTCAATGGCAGGGCCAGTGAAACTGTAGAAGTGGAAGCCATTGATATGATTCGAAAGCTCTGCGAATTTCCGGAATTGGGGATTTTGGTTTCGGAAGTGGGCCAAGGAAGTAGAAAAGCGGTGGAGAGGCGGAAATTGGGGAGATTTTGGGAGAGCTCGAAATCTTCATCTCTATCCGACGTGGCAACTTCTTTATGCCTTATTGGCGGATAG

Protein sequence

MYDESAMDEWNIKQKQRITTQPRLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGRASETVEVEAIDMIRKLCEFPELGILVSEVGQGSRKAVERRKLGRFWESSKSSSLSDVATSLCLIGG
Homology
BLAST of CmoCh10G007800 vs. ExPASy TrEMBL
Match: A0A5A7UIW0 (Replication protein A 70 kDa DNA-binding subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001760 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 88/116 (75.86%), Postives = 99/116 (85.34%), Query Frame = 0

Query: 33  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDR 92
           +TAPN+ATTT PPAA+LSKKFF++G+TP PAASATSGITIDA RAAAV P  AFSF DDR
Sbjct: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60

Query: 93  TATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGRASETVEVEAID 149
           TAT LPL++GAAAM LRDL+E   GNGLKKA L+S LWVA VNG+A ET EVEAID
Sbjct: 61  TATILPLEMGAAAMGLRDLKE---GNGLKKASLESGLWVAWVNGKAIETAEVEAID 113

BLAST of CmoCh10G007800 vs. ExPASy TrEMBL
Match: A0A5N5MFU5 (PABS domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_010392 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.6e-22
Identity = 77/141 (54.61%), Postives = 90/141 (63.83%), Query Frame = 0

Query: 23  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSP 82
           RLTGSKLETP TAP +AT+T PPAAMLSKK   DG+ PGPAASATSGITI+AV AAAVSP
Sbjct: 336 RLTGSKLETPTTAPIIATSTTPPAAMLSKKLLRDGDMPGPAASATSGITIEAVNAAAVSP 395

Query: 83  VMAFSFKDDRTATSLP-LDVGAAAMALRDLEEEEAGNGLKKAW----LDSLLWVALVNGR 142
           V AFSFK+  T+   P LD      A+  L+     +GL+K W      +L W A V+G 
Sbjct: 396 VTAFSFKEACTSNLAPDLDFVEKPTAIDGLKV----SGLRKDWELGGCSNLFWDAEVSGI 455

Query: 143 ASETVEVEAIDMIRKLCEFPE 159
             ET  + A   I  LC F E
Sbjct: 456 DIETEAIFACTSI-DLCLFLE 471

BLAST of CmoCh10G007800 vs. ExPASy TrEMBL
Match: A0A218WXK4 (Rep-A_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-21
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 0

Query: 23  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSP 82
           RLTGSKL TPITAP +  +T PPA +L +KF  +G+TP PAASATSGITI+AVRAAAVSP
Sbjct: 163 RLTGSKLATPITAPTITPSTTPPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVSP 222

Query: 83  VMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSL-LWVALVNGRASET 142
           VMAFS ++  T ++ P D  A    L    +  AG+GLKK     L    A+VNG A ET
Sbjct: 223 VMAFSLREALT-SNFPPDFDAPTKGL--FFDSLAGSGLKKHSAGFLCAEEAVVNGIAIET 282

Query: 143 VEVEAI 148
            EVEAI
Sbjct: 283 AEVEAI 285

BLAST of CmoCh10G007800 vs. ExPASy TrEMBL
Match: A0A7J7G758 (Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 69/128 (53.91%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 21  QPRLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAV 80
           +P LTGSKL TP T P M  +T PPA MLSKKF  +GETP PAASATSGIT++AV AAAV
Sbjct: 583 RPLLTGSKLATPTTRPTMTVSTTPPATMLSKKFLREGETPDPAASATSGITMEAVIAAAV 642

Query: 81  SPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKK-AWLDSLLWVALVNGRAS 140
           +PV  FSF +  T+    +       AL  L     G+GLKK A L +L WVA V+G A+
Sbjct: 643 NPVTTFSFIEALTSNFPMVVFDPTTAALEGL----TGSGLKKAAELGNLFWVAEVSGVAA 702

Query: 141 ETVEVEAI 148
           +  EVEA+
Sbjct: 703 KIAEVEAM 706

BLAST of CmoCh10G007800 vs. ExPASy TrEMBL
Match: A0A498HYV1 (Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029498 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 76/126 (60.32%), Postives = 86/126 (68.25%), Query Frame = 0

Query: 27  SKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAF 86
           SKL+TP TAP + T T PPAA+LSKKFF +GETP  AASATSGITI+AV AAAV PV AF
Sbjct: 133 SKLDTPTTAPMITTATTPPAAILSKKFFREGETP-EAASATSGITIEAVSAAAVIPVTAF 192

Query: 87  SFKDDRTATSLPLDVGAA-AMALRDLEEEEAGNGLKK----AWLDSLLWVALVNGRASET 146
           SF +  T  SLPLD  AA A A   L    +G+GLKK     W+  L WVALVNG A  T
Sbjct: 193 SFNEALT-RSLPLDFDAAGASAFEGL--SGSGSGLKKHPAEDWI--LFWVALVNGMAIVT 252

Query: 147 VEVEAI 148
             V+AI
Sbjct: 253 AVVDAI 252

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UIW01.8e-3675.86Replication protein A 70 kDa DNA-binding subunit OS=Cucumis melo var. makuwa OX=... [more]
A0A5N5MFU59.6e-2254.61PABS domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_010392 PE=... [more]
A0A218WXK43.6e-2157.14Rep-A_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923... [more]
A0A7J7G7581.4e-2053.91Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 ... [more]
A0A498HYV12.4e-2060.32Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029498 PE=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G007800.1CmoCh10G007800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0003677 DNA binding