CmoCh10G006190 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G006190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr10: 2802785 .. 2803165 (-)
RNA-Seq ExpressionCmoCh10G006190
SyntenyCmoCh10G006190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTAATCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCATAACCGCCGAAAAGCCTCCTCCTCCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCCGAACCGGACTACATCGACTCCGGCAACAAATCCAACCCTAAAAACCTAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGTCGAGAAATCGATTTTCCCCCGGCTGCTTCACGGAGTCGAAGGCACGACAGCTTCGCCTGATGACGATGGAAACGGAATCATTTCACGATGTTATGTACCACTCAGCAATCGCATCTCGCCTCGCTACCGACTTCAAAAGTCGCGGCGATTCCTGA

mRNA sequence

ATGGCGACTAATCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCATAACCGCCGAAAAGCCTCCTCCTCCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCCGAACCGGACTACATCGACTCCGGCAACAAATCCAACCCTAAAAACCTAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGTCGAGAAATCGATTTTCCCCCGGCTGCTTCACGGAGTCGAAGGCACGACAGCTTCGCCTGATGACGATGGAAACGGAATCATTTCACGATGTTATGTACCACTCAGCAATCGCATCTCGCCTCGCTACCGACTTCAAAAGTCGCGGCGATTCCTGA

Coding sequence (CDS)

ATGGCGACTAATCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCATAACCGCCGAAAAGCCTCCTCCTCCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCCGAACCGGACTACATCGACTCCGGCAACAAATCCAACCCTAAAAACCTAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGTCGAGAAATCGATTTTCCCCCGGCTGCTTCACGGAGTCGAAGGCACGACAGCTTCGCCTGATGACGATGGAAACGGAATCATTTCACGATGTTATGTACCACTCAGCAATCGCATCTCGCCTCGCTACCGACTTCAAAAGTCGCGGCGATTCCTGA

Protein sequence

MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFKSRGDS
Homology
BLAST of CmoCh10G006190 vs. ExPASy TrEMBL
Match: A0A6J1HBD8 (uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC111461308 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.6e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60
           MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK
Sbjct: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60

Query: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120
           NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF
Sbjct: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120

Query: 121 KSRGDS 127
           KSRGDS
Sbjct: 121 KSRGDS 126

BLAST of CmoCh10G006190 vs. ExPASy TrEMBL
Match: A0A6J1JBM9 (uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.7e-57
Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60
           MATNLFTFAPTSIRACASSADHNRRK   +SSSSSNWWAPVFGWSSEPDYIDS NKSNPK
Sbjct: 1   MATNLFTFAPTSIRACASSADHNRRK---TSSSSSNWWAPVFGWSSEPDYIDSANKSNPK 60

Query: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120
             ADGVSKSDPETKS+RNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF
Sbjct: 61  TPADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120

Query: 121 KSRGDS 127
           KSRGDS
Sbjct: 121 KSRGDS 123

BLAST of CmoCh10G006190 vs. ExPASy TrEMBL
Match: A0A0A0LTN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.0e-45
Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60
           MATNL TF P  IRACASSAD     +   +SSSSNWWAPVFGWSSEPDYIDSGNK+ P+
Sbjct: 1   MATNLLTFPPAGIRACASSADRRSDHSRRKTSSSSNWWAPVFGWSSEPDYIDSGNKAEPQ 60

Query: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120
           NLA G SK D ETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASRLA+DF
Sbjct: 61  NLAGGSSKPDLETKSLRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLASDF 120

Query: 121 KSRGDS 127
           KSR DS
Sbjct: 121 KSREDS 126

BLAST of CmoCh10G006190 vs. ExPASy TrEMBL
Match: A0A5D3CSV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00250 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-43
Identity = 100/131 (76.34%), Postives = 107/131 (81.68%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSADH----NRRKASSSSSSSSNWWAPVFGWSSEPDYIDS-GN 60
           MATNL TF P  IRACA+SAD     NRRKA    SSS+NWWAPVFGWSSEPDYIDS  N
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRKA----SSSTNWWAPVFGWSSEPDYIDSAAN 60

Query: 61  KSNPKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASR 120
           K+ P+NLA   SK D ETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASR
Sbjct: 61  KAEPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASR 120

Query: 121 LATDFKSRGDS 127
           LA+DFKSRGDS
Sbjct: 121 LASDFKSRGDS 127

BLAST of CmoCh10G006190 vs. ExPASy TrEMBL
Match: A0A1S4E4Y4 (uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-43
Identity = 100/131 (76.34%), Postives = 107/131 (81.68%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSADH----NRRKASSSSSSSSNWWAPVFGWSSEPDYIDS-GN 60
           MATNL TF P  IRACA+SAD     NRRKA    SSS+NWWAPVFGWSSEPDYIDS  N
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRKA----SSSTNWWAPVFGWSSEPDYIDSAAN 60

Query: 61  KSNPKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASR 120
           K+ P+NLA   SK D ETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASR
Sbjct: 61  KAEPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASR 120

Query: 121 LATDFKSRGDS 127
           LA+DFKSRGDS
Sbjct: 121 LASDFKSRGDS 127

BLAST of CmoCh10G006190 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 55/127 (43.31%), Postives = 71/127 (55.91%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSA----DHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNK 60
           MA  +   A  +IRA + S     D NR+K       S+ WWAP+FG  S+PDY+     
Sbjct: 1   MALIITCSALPTIRASSGSGSLNPDQNRKK-------SAAWWAPLFGLPSDPDYL----- 60

Query: 61  SNPKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRL 120
            N ++    V+    +   S  +F  GCFTE KA+QLR  T E  +FHDVMYHSAIASRL
Sbjct: 61  -NIESSCSTVNPDKTDISGSGQKFRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRL 114

Query: 121 ATDFKSR 124
           A+D   R
Sbjct: 121 ASDITGR 114

BLAST of CmoCh10G006190 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 61/121 (50.41%), Postives = 76/121 (62.81%), Query Frame = 0

Query: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60
           MAT +   A +SIRA +S +D  R+K  SS S    WWAP+FG SSEPDY+   NK+   
Sbjct: 1   MATIISCSALSSIRA-SSESDPARKKPVSSVS----WWAPLFGMSSEPDYV---NKT--V 60

Query: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120
           NL   + K+  E +S R      C TE KA+QLR  T E  +FHDVMYHSAIASRLA+D 
Sbjct: 61  NLESDLDKA--EKRSLR-----CCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 104

Query: 121 K 122
           +
Sbjct: 121 R 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HBD82.6e-62100.00uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC1114613... [more]
A0A6J1JBM99.7e-5793.65uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309... [more]
A0A0A0LTN75.0e-4577.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1[more]
A0A5D3CSV62.7e-4376.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E4Y42.7e-4376.34uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=... [more]
Match NameE-valueIdentityDescription
AT1G52720.12.0e-1743.31unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G15630.11.3e-1650.41unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41
NoneNo IPR availablePANTHERPTHR34198:SF18PROTEIN, PUTATIVE-RELATEDcoord: 1..125
NoneNo IPR availablePANTHERPTHR34198OS01G0175100 PROTEINcoord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G006190.1CmoCh10G006190.1mRNA