CmoCh10G006180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G006180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GTP-binding nuclear protein
Location	Cmo_Chr10: 2799430 .. 2801343 (-)
RNA-Seq Expression	CmoCh10G006180
Synteny	CmoCh10G006180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAATCGCCGAACCGATTCATTCCTCTCTCTTCGCAATTTCATTCGACGCATTCTCATGGTTGGTAGTCTCTCCTAGTCTCACTTCTCGATCTGGTCACTTTTCTGAGTATTTGTTGATTATATTTTGTGGTGAATTACACAGGCTTTGCCGGACCAGAAGACTGTTGATTATCCGAGTTTCAAGCTTGTGATTGTTGGTGATGGTGGTACTGGTATGTTCTGTTTTCTGTGTTTGCTTTGAGAACAATAATCAGCATCATTTCGTGATAGCAATGTATCATTTAGGACGTGAAGTAGTCTTTGCTAGCCAGTAGTAGTTGTTTTAGCTTGGCGTGAGAAGAAGAGAGCTTAAAACTTGAAACTGTAACAATGCCGTATGATTTGAGCAGAGATTGACAGGGTAGTGGATTTTTGTTCTAAGAAGAAATCTATGCTTTATTAGAGTTTTAATTTTTTTGTTAGAACTCGAAAGTCGAAATTTGTCTTTCTTCGTTATTGCTTATTGCCTTGTTAAAGAGGTTTTTGATCGGTAACAAGAAAGAAGAAAGAAAGAAGAAAAGAGACTCAAGAATGTTCAGGGTATCGGATTTTGTTAATCAAGGGAGATGTCGCGTTTGTATAGTTTTAGTTCGAAGGATCTTCCTTCGTCAAGTTGCATTCATCTAATACTTGACACTTGAAATTACTAGTATGATTGACCATGTTATGTTGCTCAGGAAAAACAACTTTTGTGAAAAGGCATATCACCGGGGAGTTTGAAAAGAAATACGAACGTAAGCATTTTTGCTAATCCTTTTCCATTTTGTGGTTTATTCACTGTTAGGGCTTTCTTTAAATAAATAAAAAAATTCTTATATGAATTTGTTCTTCTACTGTTTTTCATGAACTTAGCAACCATTGGCGTGGAAGTGCACCCTTTGGACTTCTTCACAAACTGTGGAAAGATCAGATTTTACTGCTGGGACACTGCCGGGCAGGAGAAGTTCGGTGGTTTACGGGATGGCTACTAGTAAGTTAAAAAAATTGGTCTTTTATATTCTTTTGGGTGTATTTTTATGCTCTCAGGTTTAGATATTCCATGTACTCTGTTGCACAATTCCATATTTCTAGTTGGAGTCTGTTTCGATGATCATTTTCCCTCTTAATTAGGCCTCTACTGTTTATTTTGAAAATGAACTGAAACTTACATTCTCTTGTACATTTGATTTGATAGTTTATTTTATATTGACTACCTTTTTGGGTCTTCTTTGAGATCTTGTTGTGGGTCTGTTATTTTATTTCCGTGATGGGCTGTCATGTTTGTTCTGATTTCAATATTCTCCTAGCGCTGAAAATCCTAATTTTATGTCTTAATCCACGATTGCAGCATCCATGGGCAATGTGCAATCATCATGTTTGATGTTACTGCCAGATTGACTTACAAAAACGTTCCTACATGGCACCGTGATCTTTGCAGGTAATCTAACTTTTGTTTGTATGAAACTATTTTATATGAATGATTGTTGCATTGTCAGGGAACCTGCTTACCATTTGTTTACTTCTAATAACACCTGCAGGGTGTGCGAGAATATTCCAATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAATAGGCAGGTGAAGGCCAAGCAAGTCACATTCCACAGGAAGAAGAACCTACAGTACTATGAAATATCTGCGAAGAGTAACTACAACTTTGAGAAACCATTCCTTTACTTGGCCAGGAAGTTAGCTGGGTAAATCCAGTTCTCTGTTTACTCTGGATTTCTTTTTTTCTTTAATGTGGGAACTTTCATGACATTGGACTTCCTTTTGTTATGGCAATCCAGGGATGCTAACATTCATTTCGTGGAGTCTCCAGCTCTGGCTCCTCCTGAAGTACACATTGACTTGGCCGCCCAGCAACAGTGA

mRNA sequence

CCTAAATCGCCGAACCGATTCATTCCTCTCTCTTCGCAATTTCATTCGACGCATTCTCATGGCTTTGCCGGACCAGAAGACTGTTGATTATCCGAGTTTCAAGCTTGTGATTGTTGGTGATGGTGGTACTGGAAAAACAACTTTTGTGAAAAGGCATATCACCGGGGAGTTTGAAAAGAAATACGAACCAACCATTGGCGTGGAAGTGCACCCTTTGGACTTCTTCACAAACTGTGGAAAGATCAGATTTTACTGCTGGGACACTGCCGGGCAGGAGAAGTTCGGTGGTTTACGGGATGGCTACTACATCCATGGGCAATGTGCAATCATCATGTTTGATGTTACTGCCAGATTGACTTACAAAAACGTTCCTACATGGCACCGTGATCTTTGCAGGGTGTGCGAGAATATTCCAATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAATAGGCAGGTGAAGGCCAAGCAAGTCACATTCCACAGGAAGAAGAACCTACAGTACTATGAAATATCTGCGAAGAGTAACTACAACTTTGAGAAACCATTCCTTTACTTGGCCAGGAAGTTAGCTGGGGATGCTAACATTCATTTCGTGGAGTCTCCAGCTCTGGCTCCTCCTGAAGTACACATTGACTTGGCCGCCCAGCAACAGTGA

Coding sequence (CDS)

ATGGCTTTGCCGGACCAGAAGACTGTTGATTATCCGAGTTTCAAGCTTGTGATTGTTGGTGATGGTGGTACTGGAAAAACAACTTTTGTGAAAAGGCATATCACCGGGGAGTTTGAAAAGAAATACGAACCAACCATTGGCGTGGAAGTGCACCCTTTGGACTTCTTCACAAACTGTGGAAAGATCAGATTTTACTGCTGGGACACTGCCGGGCAGGAGAAGTTCGGTGGTTTACGGGATGGCTACTACATCCATGGGCAATGTGCAATCATCATGTTTGATGTTACTGCCAGATTGACTTACAAAAACGTTCCTACATGGCACCGTGATCTTTGCAGGGTGTGCGAGAATATTCCAATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAATAGGCAGGTGAAGGCCAAGCAAGTCACATTCCACAGGAAGAAGAACCTACAGTACTATGAAATATCTGCGAAGAGTAACTACAACTTTGAGAAACCATTCCTTTACTTGGCCAGGAAGTTAGCTGGGGATGCTAACATTCATTTCGTGGAGTCTCCAGCTCTGGCTCCTCCTGAAGTACACATTGACTTGGCCGCCCAGCAACAGTGA

Protein sequence

MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQ

Homology

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BLAST of CmoCh10G006180 vs. ExPASy Swiss-Prot
Match: Q8H156 (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 SV=2)

HSP 1 Score: 416.0 bits (1068), Expect = 2.4e-115
Identity = 194/199 (97.49%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEV IDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. ExPASy Swiss-Prot
Match: P41917 (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 SV=3)

HSP 1 Score: 415.6 bits (1067), Expect = 3.1e-115
Identity = 192/199 (96.48%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVH+D+AAQQQ
Sbjct: 181 ESPALAPPEVHLDIAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. ExPASy Swiss-Prot
Match: P41919 (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum OX=4097 GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 7.0e-115
Identity = 193/198 (97.47%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQ 199
           ESPALAPPEV IDLAAQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQ 198

[Close]

BLAST of CmoCh10G006180 vs. ExPASy Swiss-Prot
Match: P38546 (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum OX=4081 GN=RAN1 PE=2 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 9.1e-115
Identity = 192/197 (97.46%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVHIDLAAQ 198
           ESPALAPPEVHIDLAAQ
Sbjct: 181 ESPALAPPEVHIDLAAQ 197

[Close]

BLAST of CmoCh10G006180 vs. ExPASy Swiss-Prot
Match: P38548 (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 4.5e-114
Identity = 191/199 (95.98%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEV ID+A QQ+
Sbjct: 181 ESPALAPPEVQIDIALQQR 199

[Close]

BLAST of CmoCh10G006180 vs. ExPASy TrEMBL
Match: A0A6J1JBH7 (GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111485271 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.2e-115
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVHIDLAAQQQ
Sbjct: 181 ESPALAPPEVHIDLAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. ExPASy TrEMBL
Match: A0A6J1HAB9 (GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111461564 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.2e-115
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVHIDLAAQQQ
Sbjct: 181 ESPALAPPEVHIDLAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. ExPASy TrEMBL
Match: A0A5A7TV42 (GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00300 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 5.5e-115
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVHIDLAAQQQ
Sbjct: 181 ESPALAPPEVHIDLAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. ExPASy TrEMBL
Match: A0A5A7TXX0 (GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00180 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 5.5e-115
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 34  MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 93

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 94  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 153

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 154 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 213

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVHIDLAAQQQ
Sbjct: 214 ESPALAPPEVHIDLAAQQQ 232

[Close]

BLAST of CmoCh10G006180 vs. ExPASy TrEMBL
Match: A0A6J1CUI6 (GTP-binding nuclear protein OS=Momordica charantia OX=3673 GN=LOC111014404 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 5.5e-115
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVHIDLAAQQQ
Sbjct: 181 ESPALAPPEVHIDLAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. TAIR 10
Match: AT5G55190.1 (RAN GTPase 3 )

HSP 1 Score: 416.0 bits (1068), Expect = 1.7e-116
Identity = 194/199 (97.49%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEV IDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. TAIR 10
Match: AT5G20020.1 (RAS-related GTP-binding nuclear protein 2 )

HSP 1 Score: 415.6 bits (1067), Expect = 2.2e-116
Identity = 192/199 (96.48%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           ESPALAPPEVH+D+AAQQQ
Sbjct: 181 ESPALAPPEVHLDIAAQQQ 199

[Close]

BLAST of CmoCh10G006180 vs. TAIR 10
Match: AT5G20010.1 (RAS-related nuclear protein-1 )

HSP 1 Score: 411.4 bits (1056), Expect = 4.2e-115
Identity = 190/199 (95.48%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+TVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVHIDLAAQQQ 200
           E+PALAPPEVHID+A QQ+
Sbjct: 181 ETPALAPPEVHIDIADQQK 199

[Close]

BLAST of CmoCh10G006180 vs. TAIR 10
Match: AT5G55080.1 (ras-related nuclear protein 4 )

HSP 1 Score: 305.8 bits (782), Expect = 2.5e-83
Identity = 138/183 (75.41%), Postives = 162/183 (88.52%), Query Frame = 0


Query: 1   MALPDQKTVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+Q+ VD P+FKL+IVGDGGTGKTTF+KRH+TGEFE   EPT+GV+++PLDFFTN G
Sbjct: 1   MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRF CWDTAGQEK+ GL+D YYIHGQCAIIMFDVTAR TY N+  W+RDL RVC+NIPI
Sbjct: 61  KIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGDA + FV
Sbjct: 121 VLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFV 180

Query: 181 ESP 184
           ESP
Sbjct: 181 ESP 183

[Close]

BLAST of CmoCh10G006180 vs. TAIR 10
Match: AT4G39890.1 (RAB GTPase homolog H1C )

HSP 1 Score: 104.8 bits (260), Expect = 8.4e-23
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 14  FKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +GD   GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE
Sbjct: 10  FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VK 133
           +F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+
Sbjct: 70  RFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVE 129

Query: 134 NRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 174
            RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct: 130 KRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173

The following BLAST results are available for this feature:

BLAST of CmoCh10G006180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H156	2.4e-115	97.49	GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 S...	[more]
P41917	3.1e-115	96.48	GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 S...	[more]
P41919	7.0e-115	97.47	GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum OX=4097 GN=RAN-B1 PE=2 S...	[more]
P38546	9.1e-115	97.46	GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum OX=4081 GN=RAN1 PE=2 SV...	[more]
P38548	4.5e-114	95.98	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of CmoCh10G006180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBH7	3.2e-115	100.00	GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111485271 PE=3 SV=...	[more]
A0A6J1HAB9	3.2e-115	100.00	GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111461564 PE=3 S...	[more]
A0A5A7TV42	5.5e-115	99.50	GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TXX0	5.5e-115	99.50	GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A6J1CUI6	5.5e-115	99.50	GTP-binding nuclear protein OS=Momordica charantia OX=3673 GN=LOC111014404 PE=3 ...	[more]

BLAST of CmoCh10G006180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55190.1	1.7e-116	97.49	RAN GTPase 3	[more]
AT5G20020.1	2.2e-116	96.48	RAS-related GTP-binding nuclear protein 2	[more]
AT5G20010.1	4.2e-115	95.48	RAS-related nuclear protein-1	[more]
AT5G55080.1	2.5e-83	75.41	ras-related nuclear protein 4	[more]
AT4G39890.1	8.4e-23	36.59	RAB GTPase homolog H1C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002041	Ran GTPase	PRINTS	PR00627	GTPRANTC4	coord: 168..190 score: 74.92 coord: 130..148 score: 81.38 coord: 74..92 score: 89.88 coord: 94..115 score: 86.19 coord: 27..41 score: 89.49
IPR002041	Ran GTPase	PANTHER	PTHR24071	RAN GTPASE	coord: 1..198
IPR002041	Ran GTPase	PROSITE	PS51418	RAN	coord: 7..171 score: 29.965031
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..199 e-value: 1.4E-143 score: 493.0
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..174 e-value: 7.5E-19 score: 78.6
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..174 e-value: 1.1E-27 score: 108.0
None	No IPR available	PANTHER	PTHR24071:SF19	GTP-BINDING NUCLEAR PROTEIN	coord: 1..198
None	No IPR available	PROSITE	PS51419	RAB	coord: 8..199 score: 19.662868
None	No IPR available	CDD	cd00877	Ran	coord: 14..179 e-value: 6.01348E-130 score: 360.078
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..170 e-value: 1.2E-8 score: -7.7
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..171 e-value: 1.6E-50 score: 170.9
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 5..199 score: 10.064561
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 4..199 e-value: 7.8E-65 score: 220.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..183
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 14..164 e-value: 1.1E-24 score: 85.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G006180.1	CmoCh10G006180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0000054	ribosomal subunit export from nucleus
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding