CmoCh10G006010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G006010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMediator of RNA polymerase II transcription subunit 17
LocationCmo_Chr10: 2724396 .. 2731099 (-)
RNA-Seq ExpressionCmoCh10G006010
SyntenyCmoCh10G006010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGGCTCGCTCCAAATTTTTTCCCTCCCCACATTGTTACCGGGAAAATACCGTGTGAATATGGACGGAGACATGAAAGTTTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAAAATGGTCTCGAACGATTTCCATCGTATGTTCATTCTTTATCTGGTTTTCCCACATTTTTTGGATCCTGAGATGACAGAGGAAATGTTAATTAGTTCGTATGCATGTTAAGGTAGAAGGAGATATGTCTTAGTGGACGAATGCGTGCTTGTGCTTCGTTATTCTTCATTCTGGTTACGTTCGTGTTTGTACATTGGTATTGCTTAGAGTGAACTCTGACACAATTGATCTCATTATGCTAAATTGTCTGGAATCTAATCTTTAAATGTATTCTTCGGTTTTCGTGATGAAAGTTTCTGATAAATTTATCGTTAATTTTTCAATACTTGAGATTGATTTTTGCTATACTGTTAACAGAGATGTTGGTTATGAAGAGAAACGATTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGGCCTCCAAGGAGAGTGCAACACCGTGGCAATGGCAGAGCATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGATCTCATCAACACCGTGAGTTTTTATATCAAACGCCTCTAATTTGCTAGATTGCTAGTATTAGTTTCAACAAATGTGCATGCAAAGGTTTCTTGTTAGAAAAAAGTGCCTGCAAATGTGGAGGCAAGTTGTCATAGATTTTACATTACATTTATGTCTTTGCATTTTTTTTTTCAAAGCGTGGCAGCAAAGTCCAAAGCTCAATAGTCCTCTGGAACTTAAGTGCAAGGCACATACTAGAAAAATGTTAATATCTTTTTTACACATGAAGTGGAATAGTATTATGAATATTAAGATGACGAAAAGTTGAAGAAACTAGAGATTTTATGAGAGATTATGGAGAAAAAAACAAACATTTTAAAAGAATATTTCTTAGTTTCATCCTCAAAGTAATAAATAAGTAAATAAAAAAATAAAAAATTGGGCTTCTGGTTCTGAGGTGCACACCACAAATGCTGAAGCGCTTATCTAAGTGTACCGAGGAATCATAAACCTGCAAACTGATCTTTAGTTCTTATTGGCTTTATGGATATGCTTTATTTCCTTTTTCGTTCTTTCTTGCAAGAATAGGTTGGGAGAACTTTAGTCTGTCAGTTTCATTAGGGAGGAGATAGGAGTTAACTGCTAACTATCAGGATCTTGAAATTGTGATTATTTTTCTCTGCTTGTAATTTTACTTAATTGGTTTCTTGAGAATATTGTATTTAAAAATATCATTACAAAATATTGTCTGTCTTGATATTACTGTAGGTGGAAGCTAATGATGCAGTAACAGTGGGTGGGATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGAGTACTATTTTTATCCTTCTTTTGTTCACAGAAGTGATGATTGCCTCATCTTATTAGCTTGCTTTGATTGGGCCAGCACGACCATGTTGAAAAGATTAGTTAGCAGATTATTCAATTAAAACTTCATCTTATTATCTGTACTATAATTTTGGAAATGACTGATTTTATCACCTTCCCCTTACTTTTTTACAGCATCTTGGTAAGTATTTCAAGCAGTCTGCTAAAGGTTTGGAACGCCAGGTTGCCAGGGAAGCAAGATTTTATGGGGCTTTAATTCGGTAATCAATTTTCGTCATTGATCCAACGATTATTGTGCAATGAATCAATATTAAAAATTGTATGTCATTGTTAATCTGGCAGACGGTAATACTCTTTAAATTAAAATTAAAAAGTTTTATCATAAGGTATAAATATACTATGATTTTTATTTGCAAGCCTTTATCGATTTAGATAAATTAGAAGTTCTTGATAAGATAACTTTTATGCACCTTATATGTTATACTATCTATCTATCTAGTTGTTTTAGGAAATCAAACTTTCATTGAGAAACATGAAAAAATGGACATGGGCATATAAAAAATAAGCCCATAATACGAAAGGTCCCAACACTAGTCTAGGGACGAATGCCCATAACCAAGCATTAAAGGTACAACCTCCCAAACCTCCTCCCAAGATCTCTCCACCTCTCTAAAAATTCTACTTGTCCTCTCTATCCAAATACCCTACCATACAACATAAGTAAGCATGCCACAAGATTTGCTTTTTTCTTAGAAGGGAGAGTTCAGGAGCACTTCCTCAATCATAGAGCACCAATCTCTGCTTTGAGCCAAACAAAGAACAAAAGAAGCCAAACATCGACTCTAGAGGGAGTAAGCAAACTAGCAATCTCATAATAAATGATCGATGTCCTCCTTTTGCCTCTGACAAAGAACACATCATTTGATGCAAAAAAAATAATAATAATAATAATAAAAAAATAAAAAGTCTCTGGATACAATCCAGGGTATTAACTCTCCCATTTATTATCTGCTAAGCAAAGAACTTCACCTTGTTGGGGATTCTAATCTTACAAAGAGATGAGAAAGCATAGGAAGCTTGTGGGAGGAGGGAGTGGAACACGAAATGTGAAAAAAGTGATCTACAAGAAAATGCCTAAGAACACAAAATGTAAAAGTATGATCTACAAGGAAAGGCCTAAGAAGGATTTGGGACCAAACCTGAATGTTCCTCCTCCCAGGACACACAAGGATGACAAGGAGGACGAAAGAAGGGAAAATACCTAAGAAGGATGGGTCTGCAATGATGTAGGAAGGCTTGCCACCTCCATCATCTCTTGGTCTGTAAAAGAACCACGAAAGCCCAAATGAATGGAAGAATACAGATAAGATGAAGACAAAATAGAGGCCATCAAGTGCATCCTTTTATTGGACATCCAGTATAAATGCGGAAATGGAGAACAAAAGGGTTTGATACCCACTCAGTTGTCTTCCCAAAAATAGGTCTTAGAGCGATGCCCCATTGAAGATTTCACACTCTGGAAGAACATAGGGAAACCTGAAACAATAACAACTCAGACATTTTTACTAGAGCCCTTGTCCTTGCAACATGCAACCTACTACTATAGCTACGCACAATATTTCTATGCCACAAAGTGGTAGGCTCCATGAAGCCTCATATGTTATACTAAAAGATTCATGAGATCCATTCTAGGTATTAATTGCCACAATGAAATCTAGATTTACCTTTACAGCATAACCTCAAAGTTTTCTTCTTTTAGGATCCTAAGGTGTGTAGCGGCAGGAAAAAACATTGACTTTCCTTAAGGGTATAAAATTAACCTTTATTCAATTAGTTCTTTCAATAATTGTTGTGTTCTTTTCGTCCACATTCAATTTTCCTCGGTGTCTATTGCCAGAACCAAAAAGCTCAGGCGAGACGAAGGGTGTGTGAGAATGTGCCTTTTCATTTGATTAAGTGGAGCATGGTGTTGTGTTTGTTTGTGAGTGGCAGATTGAGGATTGGTAGTGGTTGACTAATGACCTTGCTCTTCTAATTAAGTGGCTTTGGACTTTGGAGAATTTGGTGGTAGGAGTCTACTTTAATGTATAAGATTATTGCAAGTAGATTTGGGGTTTAGTCCAATAGTTGGATTTCCGACTATCTCATTGTGGTTCTAGAAGGCCATTGCCATTGCTTAAGCTTCATTTTTAATTGTTGAACTTATTTGTAAACGCAAAAGTGTAGGATTGTAGATGACCATTGTAATTTTCACTAAACTGAAATTTTTTACTATTTTTATTTTATTATTTTTTTTATTATAAAAAACTTCCATTTGAGGGAGTTCCTGAAATTCTCCTGTATTGCAGAGATAAAATCGGTTTTCTGGATATCTATTTTTTTAAAAAAAAATCTTTGTAGAGAGGCCTTTCTTTTCATTAGGGTCACTTGAGGAATGATAGAATTATTAGACGGGTGAAAGATCTTCAAAAATGGTGTGGGAGGTTGTATGGTTTTAATGCTTCTTTATGTGTCCGTTGATTGGAGTTCTTGTGATTATCAGTTCTATGTCATACTTTTGAATTTGACTTGATTCTATTGGCAAGTATGGGACTGAGAATTCCCCTTTTGTGGGCTTGTTTTTTGTTTGCTCTTCTGCATTCTTTCCTTTTTCTCAATAAAATCGCAGCTTGTATGGTGGTTGCTCCCGTTTGCCCGGTTTATAGCTTTGTTTAGCCTGTCTGTATGGGGGCTTCTTCCTAGCCCCCTGCCACAGTATAAGTTGCACCTTCTCATATTGCATCTTCTCATATTATTTCTTTCTTTCTTTTATGGTGTCATGCTTTTCTCTTTCTTTTTCTAATCACGTCTTGTTCCTTTTAAAATTAAAACAATCTGTGGATTATTTATGGTTCAGCCTTCATAATATCGTGAGCTTACTATTTAACTCTTTCATAATTTTTCATTAAATGGAAAATTTCCACCGTTTGAGATTTAATAAATATTTTTTTTAACTTTTGGCGTTGTATTTATGGTTATTATAGTGTAATTTCTAAAGAAACAATTGGAATCCTTTTGATGCTCTTAATACTTTCCCATCTTCATAGATTTTCAGTATTTGCTGATGATGTATATCAGATTGCAGCAAAATTGGAAGGTTAAAAGACAGCGCGTTGCTGCTGCAGCTCCTGCAAATGAAGGCTTTACCATTGATTTATTTGACAATTTATCATGTGATCCTTCGTCTGTGTTTCGACCATCTTCGTCTACTATTCGTGTTGATCGTGATTCGTCTGGAATGCTGGCAATTAGTTTACCTCCAAATTCATGCCACTCCCTTCGTTTTGGATTTCTCAGTGGGTGTAATATGGAAAATCCTCTGGAACGTGGTAAAAATTCATCCACAAATTCATCCAATCAGTCTCCAATTGAAAGTGAGAAGGAGTTTACAAATGACAATGAGTACATTAAGGAAACTAACTCACTTCTCCGTCAAGTTCACCATGCCATTTTCAGTGAGCAGGTAGTCTCATTAATACTTTGATCTTGCTCATTGCAAGTCCTTGCTACTTGGCCCCCACCACATGATATATGATACATCATTTTTCTTTTCACTATACTGGTTCCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAATCCATCCTTAGGTATCAATGTGACTGGCATACGAGAAAATTACTTGCAATTAAGTATAGATCAGGGTACGTCGGTTTTTATCTCTCTGGTGCCAACTGGTCAAAGCGGCCAAACAGTTGAAGATGCAAATACCTGGATTCTGGATAATACAAATTTACCTTTTGATTCGCTTGATGGGATTGAACTACCAGATAGAAGTGATCCGCTTGAAAAGAAATTGCGGAATCCTAATTATACAACCTTTGAGATATATCTGCAACAAATTTTCCATGAGCTAGTATTTGTAAAATCAAATGATAAACCCATTTCATCATTAAGCAGGCAATCAGGTCAACCTTCTAATGATGGGTCTGGACTTCTTGGTCATTTCTGTTTGTCTCTGGCTCACAGAATATTCGCAAACAAGGTTCTTATGGAGCTCGAAAATGTGGTAAGAGTCCTAATTTCTTAATAACTCAGTTTCCGATGAAAGCACAGTGCCTCATTTTTCTTTTTTTCTTTTATGAAAAAAACTACAATAACTATGATCTCTGTTTTTGATGTTACCAGCTATTAATCATGTAGTTTGTCTTTGGTTTGTTTTTAGGTTTGGAAAGTTCCATTTCTTCAATTGATATCTCATCCCACTTGGAATTCTCGAAAATCTTCATGGACGTTTTTTATGGAAGTTCCCCAGTCCAAACTTCATCCTCCTTCTATCCAGGCTCGTACATCAGATAGTCATCAAATGAAAAGTGTAACCAAATCACAATTTCAGACTAAAGTGGTTGTAAATGATGATTGCATCACTATTGAAGGGGAAGGTGCTCCTGATGTAGTTGGCTTGTTCAAGGGAAATTCCAAGGATATGTATTCAATGAACAGATATGGCTGTGACTTGGCTGATCTTCCCGTTATAATCCTGTTGCAGGTGAGCACAAATTAGATTTCCTTGTTTCGAGCTTCTTTATCGATGGAACGTAATAGTAACAATATCGTTGTGATTCCGCAACAGGTTGCGAGCCAAATTATTCTTTGGCTTCATGAGGAAGCCCTAACCTGGGGAATAAAGGTCAGCCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACACTCCGTCTGGTCGCCCATGTGGACCCAGAAGATGCTCAAGGATGCCTTTCTTGGTGGTTGGTAATGGACGATGGCCTAACGGAGGACAGGAAACATAACTTCGACATCTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTGGAAGTTTTGCAATCTACACTAATGGATTTGGTTAGTTTGTGCAGTGGATTTGGTAGCAGCCTATAACCATGCTTACTTGTCTGGTATTACAAACAGAAATTGCATCGAGCTCTTGTAATTTCTGCCCATGTTTTCAAATCTAATGAAATCACCACTTTTTGTCCGCATTGCTTACTCACCTTCATATGTTATTCATAATAGCTAATGTAGGGCGCATGACATGGATGGCTGGAAGCTGACTTCAAGAGGAAGAAACCGT

mRNA sequence

TTAGGGCTCGCTCCAAATTTTTTCCCTCCCCACATTGTTACCGGGAAAATACCGTGTGAATATGGACGGAGACATGAAAGTTTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAAAATGGTCTCGAACGATTTCCATCAGATGTTGGTTATGAAGAGAAACGATTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGGCCTCCAAGGAGAGTGCAACACCGTGGCAATGGCAGAGCATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGATCTCATCAACACCGTGGAAGCTAATGATGCAGTAACAGTGGGTGGGATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGACATCTTGGTAAGTATTTCAAGCAGTCTGCTAAAGGTTTGGAACGCCAGGTTGCCAGGGAAGCAAGATTTTATGGGGCTTTAATTCGATTGCAGCAAAATTGGAAGGTTAAAAGACAGCGCGTTGCTGCTGCAGCTCCTGCAAATGAAGGCTTTACCATTGATTTATTTGACAATTTATCATGTGATCCTTCGTCTGTGTTTCGACCATCTTCGTCTACTATTCGTGTTGATCGTGATTCGTCTGGAATGCTGGCAATTAGTTTACCTCCAAATTCATGCCACTCCCTTCGTTTTGGATTTCTCAGTGGGTGTAATATGGAAAATCCTCTGGAACGTGGTAAAAATTCATCCACAAATTCATCCAATCAGTCTCCAATTGAAAGTGAGAAGGAGTTTACAAATGACAATGAGTACATTAAGGAAACTAACTCACTTCTCCGTCAAGTTCACCATGCCATTTTCAGTGAGCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAATCCATCCTTAGGTATCAATGTGACTGGCATACGAGAAAATTACTTGCAATTAAGTATAGATCAGGGTACGTCGGTTTTTATCTCTCTGGTGCCAACTGGTCAAAGCGGCCAAACAGTTGAAGATGCAAATACCTGGATTCTGGATAATACAAATTTACCTTTTGATTCGCTTGATGGGATTGAACTACCAGATAGAAGTGATCCGCTTGAAAAGAAATTGCGGAATCCTAATTATACAACCTTTGAGATATATCTGCAACAAATTTTCCATGAGCTAGTATTTGTAAAATCAAATGATAAACCCATTTCATCATTAAGCAGGCAATCAGGTCAACCTTCTAATGATGGGTCTGGACTTCTTGGTCATTTCTGTTTGTCTCTGGCTCACAGAATATTCGCAAACAAGGTTCTTATGGAGCTCGAAAATGTGGTTTGGAAAGTTCCATTTCTTCAATTGATATCTCATCCCACTTGGAATTCTCGAAAATCTTCATGGACGTTTTTTATGGAAGTTCCCCAGTCCAAACTTCATCCTCCTTCTATCCAGGCTCGTACATCAGATAGTCATCAAATGAAAAGTGTAACCAAATCACAATTTCAGACTAAAGTGGTTGTAAATGATGATTGCATCACTATTGAAGGGGAAGGTGCTCCTGATGTAGTTGGCTTGTTCAAGGGAAATTCCAAGGATATGTATTCAATGAACAGATATGGCTGTGACTTGGCTGATCTTCCCGTTATAATCCTGTTGCAGGTTGCGAGCCAAATTATTCTTTGGCTTCATGAGGAAGCCCTAACCTGGGGAATAAAGGTCAGCCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACACTCCGTCTGGTCGCCCATGTGGACCCAGAAGATGCTCAAGGATGCCTTTCTTGGTGGTTGGTAATGGACGATGGCCTAACGGAGGACAGGAAACATAACTTCGACATCTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTGGAAGTTTTGCAATCTACACTAATGGATTTGGTTAGTTTGTGCAGTGGATTTGGTAGCAGCCTATAACCATGCTTACTTGTCTGGTATTACAAACAGAAATTGCATCGAGCTCTTGTAATTTCTGCCCATGTTTTCAAATCTAATGAAATCACCACTTTTTGTCCGCATTGCTTACTCACCTTCATATGTTATTCATAATAGCTAATGTAGGGCGCATGACATGGATGGCTGGAAGCTGACTTCAAGAGGAAGAAACCGT

Coding sequence (CDS)

ATGGACGGAGACATGAAAGTTTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAAAATGGTCTCGAACGATTTCCATCAGATGTTGGTTATGAAGAGAAACGATTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGGCCTCCAAGGAGAGTGCAACACCGTGGCAATGGCAGAGCATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGATCTCATCAACACCGTGGAAGCTAATGATGCAGTAACAGTGGGTGGGATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGACATCTTGGTAAGTATTTCAAGCAGTCTGCTAAAGGTTTGGAACGCCAGGTTGCCAGGGAAGCAAGATTTTATGGGGCTTTAATTCGATTGCAGCAAAATTGGAAGGTTAAAAGACAGCGCGTTGCTGCTGCAGCTCCTGCAAATGAAGGCTTTACCATTGATTTATTTGACAATTTATCATGTGATCCTTCGTCTGTGTTTCGACCATCTTCGTCTACTATTCGTGTTGATCGTGATTCGTCTGGAATGCTGGCAATTAGTTTACCTCCAAATTCATGCCACTCCCTTCGTTTTGGATTTCTCAGTGGGTGTAATATGGAAAATCCTCTGGAACGTGGTAAAAATTCATCCACAAATTCATCCAATCAGTCTCCAATTGAAAGTGAGAAGGAGTTTACAAATGACAATGAGTACATTAAGGAAACTAACTCACTTCTCCGTCAAGTTCACCATGCCATTTTCAGTGAGCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAATCCATCCTTAGGTATCAATGTGACTGGCATACGAGAAAATTACTTGCAATTAAGTATAGATCAGGGTACGTCGGTTTTTATCTCTCTGGTGCCAACTGGTCAAAGCGGCCAAACAGTTGAAGATGCAAATACCTGGATTCTGGATAATACAAATTTACCTTTTGATTCGCTTGATGGGATTGAACTACCAGATAGAAGTGATCCGCTTGAAAAGAAATTGCGGAATCCTAATTATACAACCTTTGAGATATATCTGCAACAAATTTTCCATGAGCTAGTATTTGTAAAATCAAATGATAAACCCATTTCATCATTAAGCAGGCAATCAGGTCAACCTTCTAATGATGGGTCTGGACTTCTTGGTCATTTCTGTTTGTCTCTGGCTCACAGAATATTCGCAAACAAGGTTCTTATGGAGCTCGAAAATGTGGTTTGGAAAGTTCCATTTCTTCAATTGATATCTCATCCCACTTGGAATTCTCGAAAATCTTCATGGACGTTTTTTATGGAAGTTCCCCAGTCCAAACTTCATCCTCCTTCTATCCAGGCTCGTACATCAGATAGTCATCAAATGAAAAGTGTAACCAAATCACAATTTCAGACTAAAGTGGTTGTAAATGATGATTGCATCACTATTGAAGGGGAAGGTGCTCCTGATGTAGTTGGCTTGTTCAAGGGAAATTCCAAGGATATGTATTCAATGAACAGATATGGCTGTGACTTGGCTGATCTTCCCGTTATAATCCTGTTGCAGGTTGCGAGCCAAATTATTCTTTGGCTTCATGAGGAAGCCCTAACCTGGGGAATAAAGGTCAGCCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACACTCCGTCTGGTCGCCCATGTGGACCCAGAAGATGCTCAAGGATGCCTTTCTTGGTGGTTGGTAATGGACGATGGCCTAACGGAGGACAGGAAACATAACTTCGACATCTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTGGAAGTTTTGCAATCTACACTAATGGATTTGGTTAGTTTGTGCAGTGGATTTGGTAGCAGCCTATAA

Protein sequence

MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQKKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAPANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNMENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLDGIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSGLLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHPPSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYGCDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPEDAQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGSSL
Homology
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BLAST of CmoCh10G006010 vs. ExPASy Swiss-Prot
Match: F4K460 (Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana OX=3702 GN=MED17 PE=1 SV=1)

HSP 1 Score: 742.3 bits (1915), Expect = 4.9e-213
Identity = 385/659 (58.42%), Postives = 503/659 (76.33%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD DM++SLD+LP+KRLE+IEENG ERFPSDV Y++KR+SLIRRIDFAWA+E++D+  KK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KQKKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEV 120
           KQKK+SK+S   W+W+ M+ENLQLAHQEL+VIIDLI+TV+ANDAVTV GMTRPKP+PNE+
Sbjct: 61  KQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEI 120

Query: 121 LSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAA 180
           LSDL VS ATKLQ +R+LG YFKQSAK LE+++ REARFYGALIRLQ+NWKVKRQR+ A+
Sbjct: 121 LSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRMLAS 180

Query: 181 APANEGFTIDLFDNLSCDPSSVFRPSS-STIRVDRDSSGMLAISLPPNSCHSLRFGFLSG 240
             +NEGFTIDL D+   DP+S FRPS+ STIRVD DS+GMLAI++P +S +SLRFG++  
Sbjct: 181 NASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYVGL 240

Query: 241 CNMENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVN 300
             + N  E  ++  + + +  P  SEK   +D++Y+KET+SLLR+VH +IF+EQ+FD++N
Sbjct: 241 NPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDMLN 300

Query: 301 REAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFD 360
           REAFN  +G N++G+REN++++SI QG S+F+SL P+G++    +       ++  L  +
Sbjct: 301 REAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ESATLLIE 360

Query: 361 SLDGIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSND 420
           S   +E  +  D   KKL  PN T++EIYLQQIFHE  F K+ D+  S   R S Q   D
Sbjct: 361 SSGRVEPAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQTEKD 420

Query: 421 -GSGLLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQS 480
             SGLL HFCLSL HRIF+N+VL+ LE+VV KVP+L LISHPTWNSR SSWT FM VP S
Sbjct: 421 SNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTVPPS 480

Query: 481 KLHPPSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSM 540
            +     + ++ D    K   K+QF+TKVVV DDCI++E E  P+VVGL K +S +++S+
Sbjct: 481 IIPQGRSETQSPDG---KRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 540

Query: 541 NRYGCDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHV 600
           N+Y CD+ADLPV+IL QVASQI+ WL EEA T G K SR+FLSLS E+ +GE + LVAHV
Sbjct: 541 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 600

Query: 601 DPEDAQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLC 656
           +PEDA+GC+SWWLVM++G TE+R       + V E RK LGHLSL+VL S LMDL++LC
Sbjct: 601 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLC 643

[Close]
BLAST of CmoCh10G006010 vs. ExPASy Swiss-Prot
Match: Q5ZID1 (Mediator of RNA polymerase II transcription subunit 17 OS=Gallus gallus OX=9031 GN=MED17 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-04
Identity = 37/188 (19.68%), Postives = 87/188 (46.28%), Query Frame = 0 

Query: 5   MKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDK------- 64
           +++S++    K+++ +  +G E +   +   +    L +RIDF+     ++D+       
Sbjct: 7   VRISIESACEKQVQEVGLDGSETYLQPLSMSQNLARLAQRIDFSQGSGSEEDEPGSAGRA 66

Query: 65  -------KKQKKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTR 124
                  + ++   K   + W W S+  NL+ A  E+ V+ D+++ V+    +T+  + +
Sbjct: 67  WAEPSEAEDEEGLVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVKDKKFMTLDPVVQ 126

Query: 125 PKPLPNEVLSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVA------REARFYGALIRL 173
             P P +      + + +K +      +   + A+ L + VA      R+  F   L+RL
Sbjct: 127 DPPPPKQ--DPQFLQLISKKKSLAGAAQILLKGAERLSKSVAENQENKRQRDFNSELLRL 186

[Close]
BLAST of CmoCh10G006010 vs. ExPASy TrEMBL
Match: A0A6J1H995 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita moschata OX=3662 GN=LOC111461671 PE=3 SV=1)

HSP 1 Score: 1322.8 bits (3422), Expect = 0.0e+00
Identity = 662/662 (100.00%), Postives = 662/662 (100.00%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120
           KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS
Sbjct: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP 180

Query: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM 240
           ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM
Sbjct: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM 240

Query: 241 ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA
Sbjct: 241 ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD 360
           FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD
Sbjct: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD 360

Query: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420
           GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG
Sbjct: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420

Query: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480
           LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP
Sbjct: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480

Query: 481 PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540
           PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG
Sbjct: 481 PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540

Query: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS 660
           AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS
Sbjct: 601 AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS 660

Query: 661 SL 663
           SL
Sbjct: 661 SL 662

[Close]
BLAST of CmoCh10G006010 vs. ExPASy TrEMBL
Match: A0A6J1JAW7 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita maxima OX=3661 GN=LOC111485135 PE=3 SV=1)

HSP 1 Score: 1290.0 bits (3337), Expect = 0.0e+00
Identity = 647/662 (97.73%), Postives = 651/662 (98.34%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120
           KK SKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTV GMTRPKPLPNEVLS
Sbjct: 61  KKTSKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAA AP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM 240
           ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPN+CHSL FGFLSGCNM
Sbjct: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNTCHSLCFGFLSGCNM 240

Query: 241 ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPLERGKN STNSSNQSPIESEKEFTND+EYIKETNSLLRQVHHAIFSEQVFD VNREA
Sbjct: 241 ENPLERGKNESTNSSNQSPIESEKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDFVNREA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD 360
           FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQS QTVEDANT ILDNTNLPFDSLD
Sbjct: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSCQTVEDANTGILDNTNLPFDSLD 360

Query: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420
           GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG
Sbjct: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420

Query: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480
           LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP
Sbjct: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480

Query: 481 PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540
           PSIQARTSDSH+M SVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG
Sbjct: 481 PSIQARTSDSHKMNSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540

Query: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS 660
           AQGCLSWWLVMDDGL EDRKHNF+ISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFG 
Sbjct: 601 AQGCLSWWLVMDDGLMEDRKHNFNISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGG 660

Query: 661 SL 663
           SL
Sbjct: 661 SL 662

[Close]
BLAST of CmoCh10G006010 vs. ExPASy TrEMBL
Match: A0A0A0KXX2 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis sativus OX=3659 GN=MED17 PE=3 SV=1)

HSP 1 Score: 1201.4 bits (3107), Expect = 0.0e+00
Identity = 602/662 (90.94%), Postives = 626/662 (94.56%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD DMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120
           KK+SKES+TPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTV GMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAA AP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM 240
           ANEGFTIDLFDN SCDPSSVFRPSSSTIRVD DSSGMLAI+LPPNSCHSLRFGFLSGCN+
Sbjct: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPPNSCHSLRFGFLSGCNV 240

Query: 241 ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPLER KN STN SNQS +  EKEFTND+EYIKETNSLLRQVHHAIFSEQVFDLVN+EA
Sbjct: 241 ENPLERDKNESTNPSNQSSVNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNQEA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD 360
           FNPS+GINVTGIRENYLQLSIDQGTSVFISLVP+GQS QTVE AN+ IL+N +LPFDSLD
Sbjct: 301 FNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEGANSEILENASLPFDSLD 360

Query: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420
           GIELPDRSDPLEKKLRNPN+ TFEIYLQQIFHELVFVKSND+PISSLSRQSGQ SNDGSG
Sbjct: 361 GIELPDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQVSNDGSG 420

Query: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480
           LLGHFCLSLAHR+FAN VLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVP S LHP
Sbjct: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPWSILHP 480

Query: 481 PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540
            SI+ARTSD +QM +VTK+QF TKVVVNDDCITIEGEGAP+VVGLF GNSKD+YS NRY 
Sbjct: 481 NSIKARTSDGYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSTNRYS 540

Query: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPVIILLQVASQIILWLHEEAL WGIK +RDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALIWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS 660
            QGCLSWWLVMDDGL EDRK NF+ SDVVPEYRKFLGHLSLEVL STLMDLVSLCSG G 
Sbjct: 601 PQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCSGVGG 660

Query: 661 SL 663
           SL
Sbjct: 661 SL 662

[Close]
BLAST of CmoCh10G006010 vs. ExPASy TrEMBL
Match: A0A1S4E2I2 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis melo OX=3656 GN=LOC103498687 PE=3 SV=1)

HSP 1 Score: 1193.7 bits (3087), Expect = 0.0e+00
Identity = 596/662 (90.03%), Postives = 626/662 (94.56%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD D+KVSLDKLP+KRLEAIEENGLERFP+DVGYEEKRLSLIRRIDFAWAIEKDD+KKKQ
Sbjct: 1   MDEDLKVSLDKLPIKRLEAIEENGLERFPTDVGYEEKRLSLIRRIDFAWAIEKDDEKKKQ 60

Query: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120
           KK+SKES+TPWQWQ+MIENLQLAHQELSVIIDLINTVEANDAVTV GMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAA AP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM 240
           ANEGFTIDLFDN SCDPSSVFRPSSSTIRVD DSSGMLAI+LPPNSCHSLRFGFLSGCN+
Sbjct: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPPNSCHSLRFGFLSGCNV 240

Query: 241 ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPLE  KN +TN SNQ+ ++ EKEFTND+EYIKETNSLLRQVHHAIF EQVFDLVN EA
Sbjct: 241 ENPLEHDKNDTTNPSNQTSVKREKEFTNDDEYIKETNSLLRQVHHAIFCEQVFDLVNHEA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD 360
           FNPS+GINVTGIRENYLQLSIDQGTSVFISLVP+GQS QTVE AN+ ILDN NLPFDSLD
Sbjct: 301 FNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQTVEGANSEILDNANLPFDSLD 360

Query: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420
           GIELPDRSDPLEKKLRNPN+ TFEIYLQQIFHELVFVKSND+PISSLSRQSGQ SNDGSG
Sbjct: 361 GIELPDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQVSNDGSG 420

Query: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480
           LLGHFCLSLAHR+FAN VLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVP+S LHP
Sbjct: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP 480

Query: 481 PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540
            SIQARTSDS+QM +VTK+QF TKVVVNDDCITIEGEGAP+VVGLF GNSKD+Y  NRY 
Sbjct: 481 NSIQARTSDSYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYLTNRYS 540

Query: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPVIILLQVASQIILWLHEEALTWGIK +RDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS 660
            QGCLSWWLVMDDGL EDRK NF+ SDVVPEYRKFLG+LSLEVL STLMDLVSLCSG G 
Sbjct: 601 PQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGNLSLEVLHSTLMDLVSLCSGVGG 660

Query: 661 SL 663
           SL
Sbjct: 661 SL 662

[Close]
BLAST of CmoCh10G006010 vs. ExPASy TrEMBL
Match: A0A5D3BMZ9 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis melo var. makuwa OX=1194695 GN=MED17 PE=3 SV=1)

HSP 1 Score: 1193.7 bits (3087), Expect = 0.0e+00
Identity = 596/662 (90.03%), Postives = 626/662 (94.56%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD D+KVSLDKLP+KRLEAIEENGLERFP+DVGYEEKRLSLIRRIDFAWAIEKDD+KKKQ
Sbjct: 1   MDEDLKVSLDKLPIKRLEAIEENGLERFPTDVGYEEKRLSLIRRIDFAWAIEKDDEKKKQ 60

Query: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120
           KK+SKES+TPWQWQ+MIENLQLAHQELSVIIDLINTVEANDAVTV GMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAAAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAA AP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNLSCDPSSVFRPSSSTIRVDRDSSGMLAISLPPNSCHSLRFGFLSGCNM 240
           ANEGFTIDLFDN SCDPSSVFRPSSSTIRVD DSSGMLAI+LPPNSCHSLRFGFLSGCN+
Sbjct: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPPNSCHSLRFGFLSGCNV 240

Query: 241 ENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPLE  KN +TN SNQ+ ++ EKEFTND+EYIKETNSLLRQVHHAIF EQVFDLVN EA
Sbjct: 241 ENPLEHDKNDTTNPSNQTSVKREKEFTNDDEYIKETNSLLRQVHHAIFCEQVFDLVNHEA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFDSLD 360
           FNPS+GINVTGIRENYLQLSIDQGTSVFISLVP+GQS QTVE AN+ ILDN NLPFDSLD
Sbjct: 301 FNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQTVEGANSEILDNANLPFDSLD 360

Query: 361 GIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSNDGSG 420
           GIELPDRSDPLEKKLRNPN+ TFEIYLQQIFHELVFVKSND+PISSLSRQSGQ SNDGSG
Sbjct: 361 GIELPDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQVSNDGSG 420

Query: 421 LLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQSKLHP 480
           LLGHFCLSLAHR+FAN VLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVP+S LHP
Sbjct: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP 480

Query: 481 PSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSMNRYG 540
            SIQARTSDS+QM +VTK+QF TKVVVNDDCITIEGEGAP+VVGLF GNSKD+Y  NRY 
Sbjct: 481 NSIQARTSDSYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYLTNRYS 540

Query: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPVIILLQVASQIILWLHEEALTWGIK +RDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 AQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLCSGFGS 660
            QGCLSWWLVMDDGL EDRK NF+ SDVVPEYRKFLG+LSLEVL STLMDLVSLCSG G 
Sbjct: 601 PQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGNLSLEVLHSTLMDLVSLCSGVGG 660

Query: 661 SL 663
           SL
Sbjct: 661 SL 662

[Close]
BLAST of CmoCh10G006010 vs. TAIR 10
Match: AT5G20170.1 (RNA polymerase II transcription mediators )

HSP 1 Score: 742.3 bits (1915), Expect = 3.4e-214
Identity = 385/659 (58.42%), Postives = 503/659 (76.33%), Query Frame = 0 

Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD DM++SLD+LP+KRLE+IEENG ERFPSDV Y++KR+SLIRRIDFAWA+E++D+  KK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KQKKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEV 120
           KQKK+SK+S   W+W+ M+ENLQLAHQEL+VIIDLI+TV+ANDAVTV GMTRPKP+PNE+
Sbjct: 61  KQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEI 120

Query: 121 LSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAA 180
           LSDL VS ATKLQ +R+LG YFKQSAK LE+++ REARFYGALIRLQ+NWKVKRQR+ A+
Sbjct: 121 LSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRMLAS 180

Query: 181 APANEGFTIDLFDNLSCDPSSVFRPSS-STIRVDRDSSGMLAISLPPNSCHSLRFGFLSG 240
             +NEGFTIDL D+   DP+S FRPS+ STIRVD DS+GMLAI++P +S +SLRFG++  
Sbjct: 181 NASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYVGL 240

Query: 241 CNMENPLERGKNSSTNSSNQSPIESEKEFTNDNEYIKETNSLLRQVHHAIFSEQVFDLVN 300
             + N  E  ++  + + +  P  SEK   +D++Y+KET+SLLR+VH +IF+EQ+FD++N
Sbjct: 241 NPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDMLN 300

Query: 301 REAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPTGQSGQTVEDANTWILDNTNLPFD 360
           REAFN  +G N++G+REN++++SI QG S+F+SL P+G++    +       ++  L  +
Sbjct: 301 REAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ESATLLIE 360

Query: 361 SLDGIELPDRSDPLEKKLRNPNYTTFEIYLQQIFHELVFVKSNDKPISSLSRQSGQPSND 420
           S   +E  +  D   KKL  PN T++EIYLQQIFHE  F K+ D+  S   R S Q   D
Sbjct: 361 SSGRVEPAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQTEKD 420

Query: 421 -GSGLLGHFCLSLAHRIFANKVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPQS 480
             SGLL HFCLSL HRIF+N+VL+ LE+VV KVP+L LISHPTWNSR SSWT FM VP S
Sbjct: 421 SNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTVPPS 480

Query: 481 KLHPPSIQARTSDSHQMKSVTKSQFQTKVVVNDDCITIEGEGAPDVVGLFKGNSKDMYSM 540
            +     + ++ D    K   K+QF+TKVVV DDCI++E E  P+VVGL K +S +++S+
Sbjct: 481 IIPQGRSETQSPDG---KRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 540

Query: 541 NRYGCDLADLPVIILLQVASQIILWLHEEALTWGIKVSRDFLSLSFELEQGETLRLVAHV 600
           N+Y CD+ADLPV+IL QVASQI+ WL EEA T G K SR+FLSLS E+ +GE + LVAHV
Sbjct: 541 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 600

Query: 601 DPEDAQGCLSWWLVMDDGLTEDRKHNFDISDVVPEYRKFLGHLSLEVLQSTLMDLVSLC 656
           +PEDA+GC+SWWLVM++G TE+R       + V E RK LGHLSL+VL S LMDL++LC
Sbjct: 601 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLC 643

The following BLAST results are available for this feature:
BLAST of CmoCh10G006010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4K4604.9e-21358.42Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana O... [more]
Q5ZID11.5e-0419.68Mediator of RNA polymerase II transcription subunit 17 OS=Gallus gallus OX=9031 ... [more]
BLAST of CmoCh10G006010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H9950.0e+00100.00Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita moschata OX=... [more]
A0A6J1JAW70.0e+0097.73Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita maxima OX=36... [more]
A0A0A0KXX20.0e+0090.94Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis sativus OX=365... [more]
A0A1S4E2I20.0e+0090.03Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis melo OX=3656 G... [more]
A0A5D3BMZ90.0e+0090.03Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis melo var. maku... [more]
BLAST of CmoCh10G006010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G20170.13.4e-21458.42RNA polymerase II transcription mediators [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019313Mediator complex, subunit Med17PFAMPF10156Med17coord: 56..337
e-value: 1.8E-5
score: 23.7
IPR019313Mediator complex, subunit Med17PANTHERPTHR13114MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17coord: 1..653
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..268

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G006010.1CmoCh10G006010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0070847 core mediator complex
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity