CmoCh10G004810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G004810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L35
LocationCmo_Chr10: 2147890 .. 2150240 (+)
RNA-Seq ExpressionCmoCh10G004810
SyntenyCmoCh10G004810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATTAAGAAATGATAAATGAAATAAAAGCTATTCACTTTATCCGCACGGCAGGCCGAGTTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCAAGCTTCAGGAGCCATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTACCCACTGTGCTCTCGCTCATCAGTTGGCGTCTCTCGTAGTTCCGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCACTGTCGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGTCTCTATTTCCCTCAATTCTCTGTGTATTTTTGGGATATTTTTGTATGGTTCAATTCTGGTTGGATTCTGATTAATTGAAGTTAATTTCAGTCTTCTAGATAGTCGGATATGTTTGTTTTTTGTTTTAATCGAATTTGTATTATGATTCGAGAATGGGATTGAATTTCAAGTACTCCTTACGGTACCCAATTCTAGACACTTACTGAAGGGGCTAATGTCATTATTATTTTTGTTGAGAATGGTGGGGAGATAGAGGTTGATTATGGATTTATAAATAACAAATAATCTCTATTGGTATTGAAGCATTATGGGGAAAGTCACGAAGAGTGGACAATATCATATCATTGTGGAGAGTCATGATTCTTAACATGTATCAGAGTTACGCCCTTAACTTAGCCATGTCAATAGAATCTTCAAATGTCGCACAAAGAAATTGTGAGCCTCAAACTTGTAGTCAAAAGTGGCTCAAGAGTCGAACAAAATGTGTATTTTGTTCGAGGACTCTAGAGAAGGAGTCGAGTCTCGATTAAGGAGAAGTTGTTCAAGAATTCCATACATCTTCGGAGAGGCTCTATAGAGTACATTGTTCGAGAGGAGGATTGTTGAGGATTGTTAGGGGAAAAGTCTCACATCGGATAATTAAGGGGTTGATCCTGAATTTATAAGTAGGAATACATCTCTACTGGTACGAGGCCTTTTAGAAAACTAAAAGTAAAGCTACGATAGCTTATGCTCAAAGTAGACAATATCACATATAATTGTGGATGGGATGGGAGTGACTCCTAACATTGTCTTCTCTTTCTGTATTGTACTGTAATTTTCTTTTTCCTTTTGATTTGATTGTTTGGTGTGACTGGATAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGGTATGCCATCTTTACTTGTTTTTATTTTTACGATTCTGTATCTGTAATGCGAAATTTCCAAACTTGTACCCTTGAGAGTTTTTCTGGGAGAGGGTTTATATAAATGGATCAAAACTTAGCCAATCCAGCCACCATTTTCAATCACTATGCGACAAGTTATTTGACAAGAAAATAGCTTTGGTTTTGAATTTTCAGAATGTAGTACACAGCCTAGTTGTTATTGATTCATTGGTTGCGTCTGAGAGCAACAAAGGCAGTTCCTTTAGCCTTTTGTTCAAATTTGATTCGATCTAGATTGTTACCAACTGGTCGAGTCCTCTGATTTCCCCTGTGGGCATATAGATCTTATGGTTAATGAACTATTTTACCAACAATATTCATGCCTATGATTTTGTTATATGAACAAAGTGCCTTTTATAATACCAAAAAAGTCTTGTTGTGCAAGGAAAATTGGCTAGTTCTCAGCATTTGTATATCTGGTTATGTTACCGAGTGTTTTCTTTGATTGGTTTCCGTCTTAACACAGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGTCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCATCAAATGGAAAAATTCGATTGCTTAAAGATCTTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAATTCCCTTCCTCTCTTTCTTTTTGCTAACTTGATAGGCTACAAAGATGGAGCTTTATTTCTTCTATAAATTATGAGGATCTGGGATGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAATCATATCTAATTTCTACTTATACAATAAACAAATTTGATTTCTTCTTTGATTTACTTCCTCAAAGAAGAATCAAAATCATCACTCCAAGAGAACAGGTG

mRNA sequence

CAAAATTAAGAAATGATAAATGAAATAAAAGCTATTCACTTTATCCGCACGGCAGGCCGAGTTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCAAGCTTCAGGAGCCATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTACCCACTGTGCTCTCGCTCATCAGTTGGCGTCTCTCGTAGTTCCGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCACTGTCGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGTCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCATCAAATGGAAAAATTCGATTGCTTAAAGATCTTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAATTCCCTTCCTCTCTTTCTTTTTGCTAACTTGATAGGCTACAAAGATGGAGCTTTATTTCTTCTATAAATTATGAGGATCTGGGATGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAATCATATCTAATTTCTACTTATACAATAAACAAATTTGATTTCTTCTTTGATTTACTTCCTCAAAGAAGAATCAAAATCATCACTCCAAGAGAACAGGTG

Coding sequence (CDS)

ATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTACCCACTGTGCTCTCGCTCATCAGTTGGCGTCTCTCGTAGTTCCGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCACTGTCGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAG

Protein sequence

MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Homology
[Close]
BLAST of CmoCh10G004810 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-33
Identity = 94/151 (62.25%), Postives = 105/151 (69.54%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           ++ AS   SF    +PL S S     RSSV   +S       LSSSH+IS     L  K 
Sbjct: 4   LSMASVNVSF---CHPLRSSSPKVSLRSSVHFATS-------LSSSHSISGLRAVLPLKI 63

Query: 61  FHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 64  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 123

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           KLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 124 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of CmoCh10G004810 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-31
Identity = 93/156 (59.62%), Postives = 102/156 (65.38%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAY--SLRLSSSHNISRFGV---A 60
           MASA+AT SF      L   S+   +   + L   NK    +L LSSS +IS   V    
Sbjct: 3   MASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQPIV 62

Query: 61  LLQKPFHIAPS--SRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLY 120
           L  K      S  S     FTV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL 
Sbjct: 63  LKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLA 122

Query: 121 KKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
           KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 KKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of CmoCh10G004810 vs. ExPASy Swiss-Prot
Match: Q8YRL9 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of CmoCh10G004810 vs. ExPASy Swiss-Prot
Match: Q3M7I2 (50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of CmoCh10G004810 vs. ExPASy Swiss-Prot
Match: B2J0D1 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of CmoCh10G004810 vs. ExPASy TrEMBL
Match: A0A6J1E327 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.6e-74
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. ExPASy TrEMBL
Match: A0A6J1JDG6 (50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.2e-70
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASA+ SFGLRF PLCSRSSV VSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.8e-61
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALLQK 60
           MASAS T SFGLRF PLCSR SV VS  SVRL SS NK  SLRL SS NIS FGVALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of CmoCh10G004810 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASAS   SFGLRF PLCSR S  VS +SV L S NK  SL+LSSSHNIS FG+  LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of CmoCh10G004810 vs. ExPASy TrEMBL
Match: A0A6J1EZN8 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57
Identity = 127/151 (84.11%), Postives = 131/151 (86.75%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASAS  A FGLRF PLCSR S  VS SS+RL S NKA SLRLSSSHNIS  GVALLQK 
Sbjct: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
             IAP  ++ TP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of CmoCh10G004810 vs. NCBI nr
Match: XP_022922051.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 7.4e-74
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. NCBI nr
Match: KAG7023426.1 (50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 7.0e-72
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGLRF PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. NCBI nr
Match: KAG6589755.1 (50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.5 bits (711), Expect = 3.5e-71
Identity = 148/151 (98.01%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGL F PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP
Sbjct: 1   MASASATASFGLMFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. NCBI nr
Match: XP_023516182.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 8.5e-70
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASATASFGLRF PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. NCBI nr
Match: XP_022988597.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           MASASA+ SFGLRF PLCSRSSV VSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of CmoCh10G004810 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-34
Identity = 94/151 (62.25%), Postives = 105/151 (69.54%), Query Frame = 0 

Query: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60
           ++ AS   SF    +PL S S     RSSV   +S       LSSSH+IS     L  K 
Sbjct: 4   LSMASVNVSF---CHPLRSSSPKVSLRSSVHFATS-------LSSSHSISGLRAVLPLKI 63

Query: 61  FHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 64  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 123

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           KLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 124 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

The following BLAST results are available for this feature:
BLAST of CmoCh10G004810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZ553.0e-3362.2550S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P233263.6e-3159.6250S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
Q8YRL94.6e-1058.7350S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
Q3M7I24.6e-1058.7350S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
B2J0D15.1e-0957.1450S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ... [more]
BLAST of CmoCh10G004810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E3273.6e-74100.0050S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=... [more]
A0A6J1JDG69.2e-7095.3650S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1[more]
A0A6J1C5507.8e-6187.5050S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV... [more]
A0A1S3B9R81.8e-5781.4650S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
A0A6J1EZN82.3e-5784.1150S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=... [more]
BLAST of CmoCh10G004810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922051.17.4e-74100.0050S ribosomal protein L35, chloroplastic-like [Cucurbita moschata][more]
KAG7023426.17.0e-7298.6850S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
KAG6589755.13.5e-7198.0150S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_023516182.18.5e-7096.6950S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022988597.11.9e-6995.3650S ribosomal protein L35, chloroplastic-like [Cucurbita maxima][more]
BLAST of CmoCh10G004810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24090.12.1e-3462.25Ribosomal protein L35 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 115..133
score: 37.84
coord: 100..114
score: 48.25
coord: 82..99
score: 61.11
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 81..143
e-value: 2.9E-23
score: 79.9
IPR001706Ribosomal protein L35, non-mitochondrialPANTHERPTHR3334354S RIBOSOMAL PROTEIN BL35Mcoord: 26..150
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15.647649
IPR037229Ribosomal protein L35 superfamilyGENE3D4.10.410.60coord: 82..144
e-value: 3.0E-20
score: 74.5
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 81..143
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
e-value: 4.0E-20
score: 72.0
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G004810.1CmoCh10G004810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome