Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCAGGGCTGTTTCCATTCTCGCTTTGCTACTTGCTCTGTCCGTCATTGTATCAGAAAGCCGCGTCGCCAGGATGGATTTGGGCCTCGACCTCGGCGGAGTTGGCGTCGGTATTGGCACCGGCGTGGGGTTGGGGTTAGGTGGCAGTGGCTCCGGATCTGGGTCTGGGTCTGGGTCTGGCTCCGGATCTGGGTCCAGTTCTGCTTCGTCATCGCACTCCTCAAGCTCCAGCTCTGGCTCTGACGCTGGGTCCGAAGCTGGTTCGTACGCCGGCTCTTACGCTGGGTCCGGATCGGGTAGAAACAGAAACGGGGGATCTGGATCTGGGTCGGGGTCGGGGTCTGGATATGGTGCGGGTTCTGGCAGGGGAAGCGGCTCTGGCGGCGGTGAAGGATATGGAGAAGGGCATGGTTATGGGAATGACGGCGAGAACTGA
mRNA sequence
ATGGCTTCCATCAGGGCTGTTTCCATTCTCGCTTTGCTACTTGCTCTGTCCGTCATTGTATCAGAAAGCCGCGTCGCCAGGATGGATTTGGGCCTCGACCTCGGCGGAGTTGGCGTCGGTATTGGCACCGGCGTGGGGTTGGGGTTAGGTGGCAGTGGCTCCGGATCTGGGTCTGGGTCTGGGTCTGGCTCCGGATCTGGGTCCAGTTCTGCTTCGTCATCGCACTCCTCAAGCTCCAGCTCTGGCTCTGACGCTGGGTCCGAAGCTGGTTCGTACGCCGGCTCTTACGCTGGGTCCGGATCGGGTAGAAACAGAAACGGGGGATCTGGATCTGGGTCGGGGTCGGGGTCTGGATATGGTGCGGGTTCTGGCAGGGGAAGCGGCTCTGGCGGCGGTGAAGGATATGGAGAAGGGCATGGTTATGGGAATGACGGCGAGAACTGA
Coding sequence (CDS)
ATGGCTTCCATCAGGGCTGTTTCCATTCTCGCTTTGCTACTTGCTCTGTCCGTCATTGTATCAGAAAGCCGCGTCGCCAGGATGGATTTGGGCCTCGACCTCGGCGGAGTTGGCGTCGGTATTGGCACCGGCGTGGGGTTGGGGTTAGGTGGCAGTGGCTCCGGATCTGGGTCTGGGTCTGGGTCTGGCTCCGGATCTGGGTCCAGTTCTGCTTCGTCATCGCACTCCTCAAGCTCCAGCTCTGGCTCTGACGCTGGGTCCGAAGCTGGTTCGTACGCCGGCTCTTACGCTGGGTCCGGATCGGGTAGAAACAGAAACGGGGGATCTGGATCTGGGTCGGGGTCGGGGTCTGGATATGGTGCGGGTTCTGGCAGGGGAAGCGGCTCTGGCGGCGGTGAAGGATATGGAGAAGGGCATGGTTATGGGAATGACGGCGAGAACTGA
Protein sequence
MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN
Homology
BLAST of CmoCh10G004680 vs. ExPASy TrEMBL
Match:
A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.3e-48
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
Query: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 148
AGSGRGSGSGGGEGYGEGHGYGNDGEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of CmoCh10G004680 vs. ExPASy TrEMBL
Match:
A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 114/144 (79.17%), Postives = 127/144 (88.19%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASI ++ ++ LL+ SVI+S++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSG 120
GSGSGSG SSS+SSS+SSSS SGS AGSEAGSYAGS AGSGSG NRNG GSGSGSG
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNG----GSGSGSG 120
Query: 121 YGAGSGRGSGSGGGEGYGEGHGYG 143
YG GSGRGSG+GGGEGYGEGHGYG
Sbjct: 121 YGGGSGRGSGNGGGEGYGEGHGYG 140
BLAST of CmoCh10G004680 vs. ExPASy TrEMBL
Match:
A0A6J1JHN1 (glycine-rich cell wall structural protein 2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485793 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 125/164 (76.22%), Postives = 129/164 (78.66%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGS-GSGSGSG 60
MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGS GSGSGSG
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGGSGSGSG 60
Query: 61 SGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGS---- 120
SGSGSGSGSSS+SSS+SSSSSSGS AGSEAGSYAGS AGSGSG +GS +GS
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSYAGS 120
Query: 121 -------------GSGYGAGSGRGSG----SGGGEGYGEGHGYG 143
GSGYG GSGRG G GGGEGYGEG GYG
Sbjct: 121 RGGSDSGRNYRNGGSGYGEGSGRGYGGGGSGGGGEGYGEGRGYG 164
BLAST of CmoCh10G004680 vs. ExPASy TrEMBL
Match:
A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 7.2e-27
Identity = 112/151 (74.17%), Postives = 121/151 (80.13%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASIR V+++ LL +SVIVSESRVAR DLGLDLGG+G+G+GTGVGLGL GSGS
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL------DGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----AGSGSGRNRNGGSGSGSGSG 120
G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSY AGSGSGRNRNGGSGSGSG+G
Sbjct: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
Query: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 148
+G G G G G GYGEGHGYGN GEN
Sbjct: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 138
BLAST of CmoCh10G004680 vs. ExPASy TrEMBL
Match:
A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 129.8 bits (325), Expect = 9.4e-27
Identity = 114/164 (69.51%), Postives = 126/164 (76.83%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASI ++ ++ LL+ SVI+S++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSS----------------------SGSDAGSEAGSYAGSYAG 120
GSGSGSGSSS+SSS S SSS SGS AGSEAGSYAGS AG
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAG 120
Query: 121 SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG 143
SGSG NRNG GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Sbjct: 121 SGSGPNRNG----GSGSGSGYGGGSGRGSGNGGGEGYGEGHGYG 160
BLAST of CmoCh10G004680 vs. NCBI nr
Match:
XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 200.7 bits (509), Expect = 8.9e-48
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
Query: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 148
AGSGRGSGSGGGEGYGEGHGYGNDGEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of CmoCh10G004680 vs. NCBI nr
Match:
XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])
HSP 1 Score: 164.9 bits (416), Expect = 5.4e-37
Identity = 134/153 (87.58%), Postives = 139/153 (90.85%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASIRAV+ILA LL +SVIVSE RVARM+LGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----AGSGSGRNRNGGSGSGSGSG 120
GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY AGSGSGRNRNG GSGSGSG
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNG--GSGSGSG 120
Query: 121 SGYGAGSGRGSGSGGGE--GYGEGHGYGNDGEN 148
SGYGAGSGRGSG G GE GYGEGHGYGN GEN
Sbjct: 121 SGYGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151
BLAST of CmoCh10G004680 vs. NCBI nr
Match:
XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 144.4 bits (363), Expect = 7.6e-31
Identity = 123/162 (75.93%), Postives = 127/162 (78.40%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASIRAVSILALLLALSVIVSESR+ARMDLGLDLGGVGVGIGTGVGLGLG GS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRIARMDLGLDLGGVGVGIGTGVGLGLG--------GS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGS--------- 120
GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGS +G G+GS
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGSGAGSEAGSYAGSR 120
Query: 121 -----------GSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG 143
GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Sbjct: 121 AGSASGRNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYG 154
BLAST of CmoCh10G004680 vs. NCBI nr
Match:
XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])
HSP 1 Score: 139.4 bits (350), Expect = 2.4e-29
Identity = 114/144 (79.17%), Postives = 127/144 (88.19%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASI ++ ++ LL+ SVI+S++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSG 120
GSGSGSG SSS+SSS+SSSS SGS AGSEAGSYAGS AGSGSG NRNG GSGSGSG
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNG----GSGSGSG 120
Query: 121 YGAGSGRGSGSGGGEGYGEGHGYG 143
YG GSGRGSG+GGGEGYGEGHGYG
Sbjct: 121 YGGGSGRGSGNGGGEGYGEGHGYG 140
BLAST of CmoCh10G004680 vs. NCBI nr
Match:
XP_023515819.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 139.4 bits (350), Expect = 2.4e-29
Identity = 114/144 (79.17%), Postives = 126/144 (87.50%), Query Frame = 0
Query: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
MASI ++ ++ LL+ S IVS++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSG 120
GSGSGSG SSS+SSS+SSSS SGS AGSEAGSYAGS AGS SGRNRNG GSGSGSG
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSASGRNRNG----GSGSGSG 120
Query: 121 YGAGSGRGSGSGGGEGYGEGHGYG 143
YG GSGRGSG+GGGEGYGEGHGYG
Sbjct: 121 YGGGSGRGSGNGGGEGYGEGHGYG 140
BLAST of CmoCh10G004680 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 100.9 bits (250), Expect = 8.9e-22
Identity = 94/140 (67.14%), Postives = 106/140 (75.71%), Query Frame = 0
Query: 9 ILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGS 68
++ L+LA SV+VSESRVAR DLGLDLGG+G GIG G+G+G GGSGSG+G+GSGSG G S
Sbjct: 12 LITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSS 71
Query: 69 SSASSSHSSSSSS---GSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYGAGSGR 128
SS+SSS SSSSSS G DAGSEAGSYAGS+AGSGSG G G GSG G G+G G G
Sbjct: 72 SSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGGG 131
Query: 129 GSGSGGGEGYGEGHGYGNDG 146
G G GGG G G G GYG G
Sbjct: 132 GGGRGGGGGSGNGEGYGEGG 151
BLAST of CmoCh10G004680 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0
Query: 1 MASIRAVSILALLLALS-VIVSESRVARMDLGLDLGGVGVGIGTGVGLGL-GGSGSGSGS 60
MA + +L L++ S V+++ESR+AR DLG+DLGG+G+G+G G+G+GL GGSGSG+G+
Sbjct: 1 MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60
Query: 61 GSGSGSGSGSSSASSSHSSSSSSGS--DAGSEAGSYAGSYAGSGSG 103
GSGSGSGS SSS+SSS SSSSSSGS AGS AGS+AGS AGSGSG
Sbjct: 61 GSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E1T0 | 4.3e-48 | 100.00 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A6J1E521 | 1.2e-29 | 79.17 | putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... | [more] |
A0A6J1JHN1 | 2.5e-27 | 76.22 | glycine-rich cell wall structural protein 2-like isoform X3 OS=Cucurbita maxima ... | [more] |
A0A1S3B8Y8 | 7.2e-27 | 74.17 | putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... | [more] |
A0A6J1E2L1 | 9.4e-27 | 69.51 | cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143... | [more] |
Match Name | E-value | Identity | Description | |
XP_022921884.1 | 8.9e-48 | 100.00 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... | [more] |
XP_038879815.1 | 5.4e-37 | 87.58 | putative per-hexamer repeat protein 5 [Benincasa hispida] | [more] |
XP_023515818.1 | 7.6e-31 | 75.93 | putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo ... | [more] |
XP_022921883.1 | 2.4e-29 | 79.17 | putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch... | [more] |
XP_023515819.1 | 2.4e-29 | 79.17 | putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo ... | [more] |