CmoCh10G003180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G003180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich RNA-binding protein 3, mitochondrial-like
LocationCmo_Chr10: 1425271 .. 1428351 (+)
RNA-Seq ExpressionCmoCh10G003180
SyntenyCmoCh10G003180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAATTCTTTTTTTCACTTCTCATATTCGTTAAAAACCCCAGCTGTTCGCAAGTCATCCTAGGGTTTTAGCATCGCAACGAGAGAGAAGAAGAACAAGGTTCGTTCTCTAATTACCCGATCTTCTCTGTCTGCGATTTTCCATTACATGTTCTTTTGCCTTCTATATGTGCTTTGATGTTTGAATTACTTCCGAAATCGTTGAAAATGTTCGTATCAAGTGTGTTGGACTTTTGATTGATGATCTCTTACTATCCTCCGAGTTATTTTTCCGGTGTATTAGATTTAGGAACTGGAAGAAATGATAGCCGCAAATAAGCGATGAGTCTTGTCTCTTTCTCGTGTTACGTATTCGAGCTTTTCATCACGGCCTCTTTTTCGTTCGCGTCTTGTTTTGGTTACTGGCTTTGATTTTATATCTCAACATGTTATGGTATACGAACGAGTGTTGGTGGTAAGGATCATATTGTTGAGTTTGAAATGTTCTTATCAACCACCAAAATCGAGCTTATGCTCGTTGGCGCTTAAAGGGATACTTATGAACGTTATTACGTACACAAGTGCCGCATTTCACTCCTTGCGAGTGTTCTATTTTTTACCCTCTCCTGTTCTATTTTTTACCCTCTCCTGTTCAGTTGTTTTGTAGTATGTTCTGGTGATGAGTTTGTGAAGTGTGTTGCGACAGTGCTCTGTGTACTCTAATTTGTCGAAAATCAAAGTGGAACATAATTTTAGGCTAACGGAAAAGCTTTCATTGCTGCCTCTGATGTTGAATCTTCGCCACTAATCTCTTTCAGGGTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTTCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTATCGGAGGTTCTATGTGATTTTTTTTTTTTTTTCTCTTTTAAGAACATGTTGACGCCAATTTCTTTTTCTTTATCTCGTATTCATATGCATGTTTATGATGACAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATACGGGGAAGTTATTGAAGGTATATCGCCATTCAACTGACTCATTTACAAGTTAAGTGTTGAAAACTATCTTAGAAGTATGTTCCCAATTACTATCATACCTTTACGCAACAAAAATGATATATTTAATAAACGCACTTTTGGAACCCGCATGGTCGGATCTGCCTGAGGAATTCTGTCCCTTTCAAATATTTTCTGAAATTATGGCCGAGCAGGTGGCCTTGGGGAGGGGTGGAGCTAGTGGATAGTGTCAAATCTGAAGTTTAGTAAAAATGTTGGTTTCCTTGTTTACCCTTCTTTTCTTTGCCCCCGTGACAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGCGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGTAATGATTCTGCTGTCAGCTTATTGTGATTAAAAAGGATAAAACATCATGTTATATTCATATGCCAAAGTATTCCATTGAGTTAATGCATCTCCGCATATAAAATGCTTCATGTCATTTGTCTGCTTTATTTCCTGTTTGACGATCGTGTCACTGTGTCAGTTGCATGAACATTGTATCTTATGAATGCATTATGAGAGCTTGAAATTGCGGAGATATTAAAGCTAATAGCAGAGGCCATTCTCTATAATATTCTCAACAATTAAATTGTGTACTAATGTGAAGTGTTCTAGGAGCTGTCACGTTGATTGGTTATTTATTCTCAAGTACATATATATGTATATGTATATTTCTGAATGTTGTGTGATTAAGGCGAGTTGTATATTGGAAACTTGTCCCAATTTCTGTTATAATGCTGGCAGTCACTACTCGTTCATGTTTTGGCACAGCTGTTCCTCTTTTATATTATCAAGGAAGCTGGCATCTTATGGTACAAAGTTAATTAAAAAATTTTAGGCAAAAAAATAAAAAAAGAGGAAAAAATAACGTTTCAAAGAAAGATGAGTGATTATGTTGATTGTAATTTGGAGGCTTGTTCCATCTCCAAATCTATGAGAATGAATCAAATTTGAAATTAACTGGCTAATTAATGGCTTAGTTTATTATTGTTGATTGATTAATGGCTTAGTTTATTATTGTTCACTTTTTCCCTTTCAAACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGCGGTGGCGGTGGTGGCTATGGTGGTGGCGGCTATGGTGGCGGTGGTGGTGGCTACGGTGGCGGTGGCGGTGGCTATGGTGGTGGCAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGCAGCTATGGCGGTGGTGGCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGGATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGGTTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAATTTGGCAGCAACGAAGCTAACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGCAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCCTAATAAATCATATGCATTATCCACAGTAGCTTCATCGTATTTTTGGTTATTGCCATGTAGATTTTCGCTACATTCTCCTGTGTTGAACACATCTACTTTGTTTGTATGTTGGACTTGCCTCAATGATCTCTGAATTTCTCTATGCACTTTCAATTTAGTTTCTCAATGATAAATAAGTTTTGTCCGAGTACGATTAGGTACCATCCTCC

mRNA sequence

ATAAATTCTTTTTTTCACTTCTCATATTCGTTAAAAACCCCAGCTGTTCGCAAGTCATCCTAGGGTTTTAGCATCGCAACGAGAGAGAAGAAGAACAAGGGTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTTCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATACGGGGAAGTTATTGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGCGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGCGGTGGCGGTGGTGGCTATGGTGGTGGCGGCTATGGTGGCGGTGGTGGTGGCTACGGTGGCGGTGGCGGTGGCTATGGTGGTGGCAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGCAGCTATGGCGGTGGTGGCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGGATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGGTTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAATTTGGCAGCAACGAAGCTAACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGCAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCCTAATAAATCATATGCATTATCCACAGTAGCTTCATCGTATTTTTGGTTATTGCCATGTAGATTTTCGCTACATTCTCCTGTGTTGAACACATCTACTTTGTTTGTATGTTGGACTTGCCTCAATGATCTCTGAATTTCTCTATGCACTTTCAATTTAGTTTCTCAATGATAAATAAGTTTTGTCCGAGTACGATTAGGTACCATCCTCC

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTTCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATACGGGGAAGTTATTGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGCGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGCGGTGGCGGTGGTGGCTATGGTGGTGGCGGCTATGGTGGCGGTGGTGGTGGCTACGGTGGCGGTGGCGGTGGCTATGGTGGTGGCAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGCAGCTATGGCGGTGGTGGCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGGATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGGTTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAATTTGGCAGCAACGAAGCTAACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGCAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCCTAA

Protein sequence

MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEGNDRDEDDNADDFAKRA
Homology
[Close]
BLAST of CmoCh10G003180 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.6e-41
Identity = 185/335 (55.22%), Postives = 215/335 (64.18%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK GNIL+Q  NK+        S S+FQA+R MS   SSK+FIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRSR--GMGGGGYGGGGGGYGG-GGYGGGGGGYGGGGG-GYGGGSYGG-GGGSYGGGSYG 180
           DR+   G GGGGYGGGGGGYGG GGYGGG GGYGG GG G G G YGG  GG YGG + G
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

Query: 181 G-GGSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGN-DAGS----NAA 240
           G GGSG GGYGG++ G  G    AG  Y SS G GS  SG  YG G +  AG+    N +
Sbjct: 181 GYGGSGAGGYGGDATGHGG----AGGGYGSSGGFGS--SGNTYGEGSSASAGAVGDYNGS 240

Query: 241 SNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGG----YTGGDQFGSNEANT 300
           S + S NT+GS ++ GF       G   F  S    SS FGG    +T G QFG      
Sbjct: 241 SGYGSANTYGS-SNGGF------AGDSQFGGSPVGNSSQFGGDNTQFTAGGQFG------ 300

Query: 301 LNASGDQGLGEQLEGNDRDED----DNADDFAKRA 317
               G+   G   +   + ED       +D AKRA
Sbjct: 301 ----GEDQFGSMEKSETKMEDGPIGGEFEDVAKRA 309

[Close]
BLAST of CmoCh10G003180 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-29
Identity = 157/323 (48.61%), Postives = 192/323 (59.44%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVG +  Q ++  T       S S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTA------SSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 DRSRGMGGGGYGGGGGGYGG--GGYGGGGGGYGGGGGGYGG-----GSYGGGGGSYGGGS 180
           +R  G GG G+GG GGGYG   GGYG   GGYGGG GGYGG     G+ GGGGG  G  S
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSS 180

Query: 181 YGGGGSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFA 240
           YGG   G GG    SG   G G   G N+         G GG YG  G   GS    NFA
Sbjct: 181 YGGNAGGYGGNPPYSGNAVGGGGGYGSNF---------GGGGGYGVAGGVGGS---ENFA 240

Query: 241 SGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQG 300
            G++  +G    F++N   G      ++     SG G   G +QFG ++    N  GD  
Sbjct: 241 QGSSTNAGFDDKFESNQPLGN-----DTDHQTESGLG---GDEQFGGSD----NQFGDAE 289

Query: 301 LGEQLEGNDRDEDDNADDFAKRA 317
            G    G    +  +  D AKRA
Sbjct: 301 NGNTENGPVGFDQTDDGDVAKRA 289

[Close]
BLAST of CmoCh10G003180 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-22
Identity = 93/157 (59.24%), Postives = 119/157 (75.80%), Query Frame = 0 

Query: 44  KVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG++++T++++L +AF  +G+VI+++VI DRETGRSRGFGFVT++S +    AI+ 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 104 LDGQDLHGRRVRVNYANDRSRGMGGGGYGGGGGGYG---GGGYGGGGGGYGG---GGGGY 163
           ++G++L GR + VN A  R  G GGGGYGGGGGGYG   GGGYGGGGGGYGG   GGGGY
Sbjct: 69  MNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGGRREGGGGY 128

Query: 164 GGGSYGGGGGSYGGGSYGGGGSGGGGYGGESGGGFGS 195
           GGG YGGGGG YGG   GGG  GGGGYGG  G   G+
Sbjct: 129 GGGGYGGGGGGYGGREGGGGYGGGGGYGGNRGDSGGN 165

[Close]
BLAST of CmoCh10G003180 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-22
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 0 

Query: 44  KVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG+ ++TDDQSL+ AF+KYG+VI++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 104 LDGQDLHGRRVRVNYANDRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYG 163
           ++GQDL GR + VN A  R R  GGGG+GGGGGGYGG    GGGGGYGGGGGGYGGG  G
Sbjct: 67  MNGQDLDGRNITVNEAQSR-RSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSG 126

Query: 164 GGGG----SYGGGSYGGGGSGGGGYGGESGGG 192
           GGGG      GGG YGGGG G GG  G SGGG
Sbjct: 127 GGGGYGSRDGGGGGYGGGGGGYGGSRGGSGGG 157

[Close]
BLAST of CmoCh10G003180 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.7e-19
Identity = 93/162 (57.41%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 44  KVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG++++TD++SL  AF+++GE++++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGG---GGGY--G 163
           ++GQDL GR + VN A  R  G GGGG GGGGG  GGGGYGGGGGGYGGG   GGGY  G
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRREGGGYSGG 128

Query: 164 GGSYGGGGGSYGGGSYGGGG-SGGGGYGGESGGGFGSGFSAG 200
           GG Y   GG  GGG YGGGG   GGGYGG  GGG+G G   G
Sbjct: 129 GGGYSSRGG--GGGGYGGGGRRDGGGYGGGEGGGYGGGGGGG 168

[Close]
BLAST of CmoCh10G003180 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.9e-142
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180
           DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240
           GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

Query: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG 300
           GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG
Sbjct: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG 300

Query: 301 NDRDEDDNADDFAKRA 317
           NDRDEDDNADDFAKRA
Sbjct: 301 NDRDEDDNADDFAKRA 316

[Close]
BLAST of CmoCh10G003180 vs. ExPASy TrEMBL
Match: A0A6J1JKW7 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.8e-126
Identity = 298/320 (93.12%), Postives = 301/320 (94.06%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLN QAPSLSI QAVRWMSSMQSSKVF+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG---GGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGG 180
           DRSRGMG   GGGYGGGGGGYGGGGY  GGGGYGGGG G G G YGGGGGSY GG+YGGG
Sbjct: 121 DRSRGMGGGYGGGYGGGGGGYGGGGY--GGGGYGGGGYGGGSGGYGGGGGSYSGGAYGGG 180

Query: 181 GSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNT 240
           GSGGGGYGGESGGGFGSGFS GDNYSSSFG GSQGSGGNYGTGGNDAGSN+ASNFASGN 
Sbjct: 181 GSGGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQGSGGNYGTGGNDAGSNSASNFASGN- 240

Query: 241 FGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSN-EANTLNASGDQGLGE 300
             SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSN EANTLNASGDQGLGE
Sbjct: 241 --SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNDEANTLNASGDQGLGE 300

Query: 301 QLEGNDRDEDDNADDFAKRA 317
           QLEGNDRDEDDNADDFAKRA
Sbjct: 301 QLEGNDRDEDDNADDFAKRA 315

[Close]
BLAST of CmoCh10G003180 vs. ExPASy TrEMBL
Match: A0A6J1JIA1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.8e-121
Identity = 273/317 (86.12%), Postives = 276/317 (87.07%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLN QAPSLSI QAVRWMSSMQSSKVF+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180
           DRSRGMGGGG                               YGGGGGSY GG+YGGGGSG
Sbjct: 121 DRSRGMGGGG-------------------------------YGGGGGSYSGGAYGGGGSG 180

Query: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240
           GGGYGGESGGGFGSGFS GDNYSSSFG GSQGSGGNYGTGGNDAGSN+ASNFASGN   S
Sbjct: 181 GGGYGGESGGGFGSGFSTGDNYSSSFGGGSQGSGGNYGTGGNDAGSNSASNFASGN---S 240

Query: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSN-EANTLNASGDQGLGEQLE 300
           GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSN EANTLNASGDQGLGEQLE
Sbjct: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNDEANTLNASGDQGLGEQLE 283

Query: 301 GNDRDEDDNADDFAKRA 317
           GNDRDEDDNADDFAKRA
Sbjct: 301 GNDRDEDDNADDFAKRA 283

[Close]
BLAST of CmoCh10G003180 vs. ExPASy TrEMBL
Match: A0A6J1EZK6 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440991 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.8e-90
Identity = 245/332 (73.80%), Postives = 265/332 (79.82%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKR G + QAPSLSI QAVRWMSSMQSSK+F+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180
           DRSRG+GGGGY GGGGGYGGGGYGGGGG   GGGGGYG G         G G YGGGGS 
Sbjct: 121 DRSRGVGGGGY-GGGGGYGGGGYGGGGG--YGGGGGYGDG---------GAGGYGGGGS- 180

Query: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGT----------------GGNDA 240
            GGYG  SGG   +G+S+G NYS++FG GSQGSGGNYG                 GGNDA
Sbjct: 181 -GGYGDGSGGFSTTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDA 240

Query: 241 GSNAASNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEAN 300
           G N ASNF+ G+   SG     + NVS GGGDYF+N GS+ SSGFGGYTGGDQF S E +
Sbjct: 241 GYN-ASNFSGGD---SG-----NYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETD 300

Query: 301 TLNASGDQGLGEQLEGNDRDEDDNADDFAKRA 317
           T+NA G  GLGEQLEGNDRDEDD+ADDFAKRA
Sbjct: 301 TMNAPG-SGLGEQLEGNDRDEDDDADDFAKRA 308

[Close]
BLAST of CmoCh10G003180 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 3.2e-88
Identity = 242/332 (72.89%), Postives = 267/332 (80.42%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANK+ G + QA SLSI QAVRWMSSMQSSK+F+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180
           DRSRG+GGGGYGGGGG  GGGGYGGGG   G GGGGYGGG YGGG    G G YGGGGS 
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGG---GYGGGGYGGGGYGGG----GPGGYGGGGS- 180

Query: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGT----------------GGNDA 240
            GGYG  SGG   +G+S+G NY+++FG GSQG+GGNYG                 GGNDA
Sbjct: 181 -GGYGDGSGGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDA 240

Query: 241 GSNAASNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEAN 300
           G N ASNF+ G+   SG     + NVS GGGDYF+N GS+ SSGFGGYTGGDQF S E +
Sbjct: 241 GYN-ASNFSGGD---SG-----NYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETD 300

Query: 301 TLNASGDQGLGEQLEGNDRDEDDNADDFAKRA 317
           ++NA G  GLGEQLEGNDRDEDD+A+DFAKRA
Sbjct: 301 SMNAPG-SGLGEQLEGNDRDEDDDANDFAKRA 313

[Close]
BLAST of CmoCh10G003180 vs. NCBI nr
Match: XP_022921902.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 514.6 bits (1324), Expect = 6.0e-142
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180
           DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240
           GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

Query: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG 300
           GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG
Sbjct: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG 300

Query: 301 NDRDEDDNADDFAKRA 317
           NDRDEDDNADDFAKRA
Sbjct: 301 NDRDEDDNADDFAKRA 316

[Close]
BLAST of CmoCh10G003180 vs. NCBI nr
Match: KAG6589603.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492.3 bits (1266), Expect = 3.2e-135
Identity = 311/321 (96.88%), Postives = 312/321 (97.20%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLN QAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR
Sbjct: 15  MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 74

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 75  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 134

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYG----GGGGGY-GGGSYGGGGGSYGGGSYG 180
           DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYG    GGGGGY GGGSYGGGGGSYGGG+YG
Sbjct: 135 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGGGGYGGGGSYGGGGGSYGGGAYG 194

Query: 181 GGGSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASG 240
           GG SGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASG
Sbjct: 195 GGVSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASG 254

Query: 241 NTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLG 300
           NTFGSGTSA FDTNVSNGGGDYFANSGSDASSGFGGYTGGDQ GSNEANTLNASGDQGLG
Sbjct: 255 NTFGSGTSADFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQLGSNEANTLNASGDQGLG 314

Query: 301 EQLEGNDRDEDDNADDFAKRA 317
           EQLEGNDRDEDDNADDFAKRA
Sbjct: 315 EQLEGNDRDEDDNADDFAKRA 335

[Close]
BLAST of CmoCh10G003180 vs. NCBI nr
Match: KAG7023294.1 (Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 489.6 bits (1259), Expect = 2.1e-134
Identity = 308/316 (97.47%), Postives = 309/316 (97.78%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLN QAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180
           DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGG G G GSYGGGGGSYGGG+YGGG SG
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYG-GSGSYGGGGGSYGGGAYGGGVSG 180

Query: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240
           GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

Query: 241 GTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLEG 300
           GTSA FDTNVSNGGGDYFANSGSDASSGFGGYTGGDQ GSNEANTLNASGDQGLGEQLEG
Sbjct: 241 GTSADFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQLGSNEANTLNASGDQGLGEQLEG 300

Query: 301 NDRDEDDNADDFAKRA 317
           NDRDEDDNADDFAKRA
Sbjct: 301 NDRDEDDNADDFAKRA 315

[Close]
BLAST of CmoCh10G003180 vs. NCBI nr
Match: XP_023516049.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475.3 bits (1222), Expect = 4.0e-130
Identity = 301/317 (94.95%), Postives = 306/317 (96.53%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLN QAPSLSIFQAVRWMSSMQSSKVF+GGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSY-GGGSYGGGGS 180
           DRSRGMGGGGYGGGGGGYGGGG G GGG YGGGGG YGGG    GGG+Y GGG+YGGGGS
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGGGSYGGGAYGGGGAYGGGGS 180

Query: 181 GGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFG 240
           GGGGYGGESGGGFGS FSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFG
Sbjct: 181 GGGGYGGESGGGFGSVFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFG 240

Query: 241 SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQLE 300
           SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEA+TLNASGDQGLGEQLE
Sbjct: 241 SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEADTLNASGDQGLGEQLE 300

Query: 301 GNDRDEDDNADDFAKRA 317
           GNDRDEDDNADDFAKRA
Sbjct: 301 GNDRDEDDNADDFAKRA 317

[Close]
BLAST of CmoCh10G003180 vs. NCBI nr
Match: XP_022987968.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022987969.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 461.1 bits (1185), Expect = 7.9e-126
Identity = 298/320 (93.12%), Postives = 301/320 (94.06%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLN QAPSLSI QAVRWMSSMQSSKVF+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG---GGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGG 180
           DRSRGMG   GGGYGGGGGGYGGGGY  GGGGYGGGG G G G YGGGGGSY GG+YGGG
Sbjct: 121 DRSRGMGGGYGGGYGGGGGGYGGGGY--GGGGYGGGGYGGGSGGYGGGGGSYSGGAYGGG 180

Query: 181 GSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNT 240
           GSGGGGYGGESGGGFGSGFS GDNYSSSFG GSQGSGGNYGTGGNDAGSN+ASNFASGN 
Sbjct: 181 GSGGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQGSGGNYGTGGNDAGSNSASNFASGN- 240

Query: 241 FGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSN-EANTLNASGDQGLGE 300
             SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSN EANTLNASGDQGLGE
Sbjct: 241 --SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNDEANTLNASGDQGLGE 300

Query: 301 QLEGNDRDEDDNADDFAKRA 317
           QLEGNDRDEDDNADDFAKRA
Sbjct: 301 QLEGNDRDEDDNADDFAKRA 315

[Close]
BLAST of CmoCh10G003180 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-42
Identity = 185/335 (55.22%), Postives = 215/335 (64.18%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK GNIL+Q  NK+        S S+FQA+R MS   SSK+FIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRSR--GMGGGGYGGGGGGYGG-GGYGGGGGGYGGGGG-GYGGGSYGG-GGGSYGGGSYG 180
           DR+   G GGGGYGGGGGGYGG GGYGGG GGYGG GG G G G YGG  GG YGG + G
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

Query: 181 G-GGSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGN-DAGS----NAA 240
           G GGSG GGYGG++ G  G    AG  Y SS G GS  SG  YG G +  AG+    N +
Sbjct: 181 GYGGSGAGGYGGDATGHGG----AGGGYGSSGGFGS--SGNTYGEGSSASAGAVGDYNGS 240

Query: 241 SNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGG----YTGGDQFGSNEANT 300
           S + S NT+GS ++ GF       G   F  S    SS FGG    +T G QFG      
Sbjct: 241 SGYGSANTYGS-SNGGF------AGDSQFGGSPVGNSSQFGGDNTQFTAGGQFG------ 300

Query: 301 LNASGDQGLGEQLEGNDRDED----DNADDFAKRA 317
               G+   G   +   + ED       +D AKRA
Sbjct: 301 ----GEDQFGSMEKSETKMEDGPIGGEFEDVAKRA 309

[Close]
BLAST of CmoCh10G003180 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-30
Identity = 157/323 (48.61%), Postives = 192/323 (59.44%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVG +  Q ++  T       S S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTA------SSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 DRSRGMGGGGYGGGGGGYGG--GGYGGGGGGYGGGGGGYGG-----GSYGGGGGSYGGGS 180
           +R  G GG G+GG GGGYG   GGYG   GGYGGG GGYGG     G+ GGGGG  G  S
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSS 180

Query: 181 YGGGGSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFA 240
           YGG   G GG    SG   G G   G N+         G GG YG  G   GS    NFA
Sbjct: 181 YGGNAGGYGGNPPYSGNAVGGGGGYGSNF---------GGGGGYGVAGGVGGS---ENFA 240

Query: 241 SGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQG 300
            G++  +G    F++N   G      ++     SG G   G +QFG ++    N  GD  
Sbjct: 241 QGSSTNAGFDDKFESNQPLGN-----DTDHQTESGLG---GDEQFGGSD----NQFGDAE 289

Query: 301 LGEQLEGNDRDEDDNADDFAKRA 317
            G    G    +  +  D AKRA
Sbjct: 301 NGNTENGPVGFDQTDDGDVAKRA 289

[Close]
BLAST of CmoCh10G003180 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-26
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+G +LRQ  +     N   P  S+  ++R M    S+K+FIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISS----NGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGG 167
           DR       G GGGG   GGGGYGGGGGGYGGGGGGYGGG  GGGG
Sbjct: 121 DRPSAPRAYG-GGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGGG 157

[Close]
BLAST of CmoCh10G003180 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-25
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+G +LRQ  +     N   P  S+  ++R M    S+K+FIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISS----NGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGG 167
           DR        YGGG    GG  YGGGGGGYGGGGGGYGGG  GGGG
Sbjct: 121 DRP--SAPRAYGGG----GGYSYGGGGGGYGGGGGGYGGGGDGGGG 152

[Close]
BLAST of CmoCh10G003180 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 95.9 bits (237), Expect = 6.2e-20
Identity = 95/166 (57.23%), Postives = 116/166 (69.88%), Query Frame = 0 

Query: 44  KVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG++++TDD++L  AF +YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRSRGMGGGGYGGGGGGY---GGGGYGGGGGGYGGGGG-GYGG 163
           ++GQDL GR + VN A  R  G GGG  GGGGGGY   GGGGY GGGG YGGGGG   GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGGGRREGG 128

Query: 164 GSYGGGGGSY-----GGGSYGGG-GSGGGGYGGESGGGFGSGFSAG 200
           G Y GGGG Y     GGGSYGGG   GGGGYGG  GGG+G     G
Sbjct: 129 GGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGG 174

The following BLAST results are available for this feature:
BLAST of CmoCh10G003180 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNR13.6e-4155.22Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9C9091.4e-2948.61Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q990701.3e-2259.24Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1[more]
Q434721.7e-2263.82Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=... [more]
P493118.7e-1957.41Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1[more]
BLAST of CmoCh10G003180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1P22.9e-142100.00glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1JKW73.8e-12693.13glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m... [more]
A0A6J1JIA14.8e-12186.12glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m... [more]
A0A6J1EZK69.8e-9073.80glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1I7Z23.2e-8872.89glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m... [more]
BLAST of CmoCh10G003180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921902.16.0e-142100.00glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata][more]
KAG6589603.13.2e-13596.88Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper... [more]
KAG7023294.12.1e-13497.47Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp.... [more]
XP_023516049.14.0e-13094.95glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
XP_022987968.17.9e-12693.13glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita max... [more]
BLAST of CmoCh10G003180 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G61030.12.6e-4255.22glycine-rich RNA-binding protein 3 [more]
AT1G74230.11.0e-3048.61glycine-rich RNA-binding protein 5 [more]
AT4G13850.11.5e-2656.02glycine-rich RNA-binding protein 2 [more]
AT4G13850.22.2e-2554.22glycine-rich RNA-binding protein 2 [more]
AT2G21660.16.2e-2057.23cold, circadian rhythm, and rna binding 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 214..232
score: 34.21
coord: 133..148
score: 60.16
coord: 39..55
score: 25.0
coord: 162..172
score: 43.18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..316
NoneNo IPR availablePANTHERPTHR48027HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 1..160
NoneNo IPR availablePANTHERPTHR48027:SF9GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIALcoord: 1..160
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 44..117
e-value: 6.3E-30
score: 115.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 45..115
e-value: 1.6E-22
score: 79.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 43..121
score: 22.298967
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 24..139
e-value: 1.5E-33
score: 117.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 40..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G003180.1CmoCh10G003180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding