CmoCh10G002130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G002130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cmo_Chr10: 948889 .. 950839 (-)
RNA-Seq Expression	CmoCh10G002130
Synteny	CmoCh10G002130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCACGAAGGTGCAGGGTAACATGGGTGCATTTGTTCATTTTTTTACTTAAAGGTGTATGACATCTCAAGGCCACAAATGCATTTAGGTTTTATTAATCAACTCAAGCCACTCCAAGTTTGGTACAAAAAAGTGACACCTTTAGGAAATAAGCATATTACCAAAGTGGTCAATTTGAGGCCCAACTATGTTTCTACCCAATTTGAGGCCCAACTTTTAACCAAGCCCACTGGACCTCGCAGAGGCCCAGGTCAATTTAAGCGCATTTTTTAAAAATTGTTTAAAGTGGAGATTTCTTCTGATTGGAGGGCCACTTGTCATAGTCCAATTGGCAAGTCAAGATTCCACGTGGATATATTCCTCAATCGTAACTCTGGCAGGAGACCCGCCCACGTAGGAAAGGTGTGGCCCCACATTATCATTTATCAACCAATGGAAGCATAGAAACAGATTGAAGATATTACTCAAAGGATAAAGCGATAAGGCCCCGTCGTCCCCTTCGGGCAGTCCAGAACTCCCGACCAATTTCCAGCCGTTAGATCGTGAAAATCTCGTGAATGAACCCTCAGATCTGAAGAGCGAACAAGAACCACAAACTTAGCATGGAAGTGATGTTACAAAGGCCTCCAAATTACTCCCCCATTTCTTCCTCAATCTCCCCCACACAAAAGTAGATCGTTCAGGAGAGATGGCCACCGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCGAGATTCCTTACTGGTTCTTCCGGCAAACTCCACCGTATGCTGTCGGTTAAACCAGTCACTGCTTCGTCTTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCATACTTAAATGGCAGGTAAAACCATACACTAGAAATCTACTCTTAACTTGCGTTACGAACTAGAAGTGATTGGAAAAATTGGGTTTTCTCCTAAGCCAATGATTAAACGAAATGCAGTCTTCCAGGGGACAATGGATTTGACCCACTGTCTCTAGCCGAGGACCCAGAGAACTTGAAGTGGTTCGTGCAAGCGGAGCTGGTGAACGGCCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTCTTCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATCCTTTTCCATTACGTGGAAATCCGAAGGTGGCAGGACATCAAGAACCCCGGCAGCGTGAACCAAGACCCCATCTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGTTACCCCGGTGGGATTTTCAACCCCCTCAATTTCGCTCCCACTCAGGAAGCCAAAGAGAAGGAACTAGCCAATGGTAAGCTCTTACAACTAAACCTCTAGATATAAACTCCAGATTTGTCTTATGATATGAATTGGTGTTTATTTCTTGTACAGGGAGGCTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAACGTGACAGGGAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTGCAGACGTTCAGTGGCAACTAAATTTGGTTTGTAGGAAGAGAAGGTTGGTGTGTTAAAAGTAAATGGTTGAGATTGTTTTGAGAGCTTGTTTTTGGAATGTGATATGAAACAACATAGTGGATCTCAGTGTACAGTGGTGGGAGGCTTCCCATGTAGCTTGGATGTTGTTTAAATGACACGATCCTTCCACTTATTACACATTCCATGAACATGAATTGCCTTTTGCAGCTTCATTCATATTCAAACTCTAAATTATCAAAACTTTCTTATAATTCTAACGAGAGAGTCTTAACAAGTCAAGATATTATAAACATCTTACCAAAAACCGAAGAACGCCACGCCCC

mRNA sequence

GTCACGAAGGTGCAGGGTAACATGGGTGCATTTGTTCATTTTTTTACTTAAAGGTGTATGACATCTCAAGGCCACAAATGCATTTAGGTTTTATTAATCAACTCAAGCCACTCCAAGTTTGGTACAAAAAAGTGACACCTTTAGGAAATAAGCATATTACCAAAGTGGTCAATTTGAGGCCCAACTATGTTTCTACCCAATTTGAGGCCCAACTTTTAACCAAGCCCACTGGACCTCGCAGAGGCCCAGGTCAATTTAAGCGCATTTTTTAAAAATTGTTTAAAGTGGAGATTTCTTCTGATTGGAGGGCCACTTGTCATAGTCCAATTGGCAAGTCAAGATTCCACGTGGATATATTCCTCAATCGTAACTCTGGCAGGAGACCCGCCCACGTAGGAAAGGTGTGGCCCCACATTATCATTTATCAACCAATGGAAGCATAGAAACAGATTGAAGATATTACTCAAAGGATAAAGCGATAAGGCCCCGTCGTCCCCTTCGGGCAGTCCAGAACTCCCGACCAATTTCCAGCCGTTAGATCGTGAAAATCTCGTGAATGAACCCTCAGATCTGAAGAGCGAACAAGAACCACAAACTTAGCATGGAAGTGATGTTACAAAGGCCTCCAAATTACTCCCCCATTTCTTCCTCAATCTCCCCCACACAAAAGTAGATCGTTCAGGAGAGATGGCCACCGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCGAGATTCCTTACTGGTTCTTCCGGCAAACTCCACCGTATGCTGTCGGTTAAACCAGTCACTGCTTCGTCTTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCATACTTAAATGGCAGTCTTCCAGGGGACAATGGATTTGACCCACTGTCTCTAGCCGAGGACCCAGAGAACTTGAAGTGGTTCGTGCAAGCGGAGCTGGTGAACGGCCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTCTTCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATCCTTTTCCATTACGTGGAAATCCGAAGGTGGCAGGACATCAAGAACCCCGGCAGCGTGAACCAAGACCCCATCTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGTTACCCCGGTGGGATTTTCAACCCCCTCAATTTCGCTCCCACTCAGGAAGCCAAAGAGAAGGAACTAGCCAATGGGAGGCTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAACGTGACAGGGAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTGCAGACGTTCAGTGGCAACTAAATTTGGTTTGTAGGAAGAGAAGGTTGGTGTGTTAAAAGTAAATGGTTGAGATTGTTTTGAGAGCTTGTTTTTGGAATGTGATATGAAACAACATAGTGGATCTCAGTGTACAGTGGTGGGAGGCTTCCCATGTAGCTTGGATGTTGTTTAAATGACACGATCCTTCCACTTATTACACATTCCATGAACATGAATTGCCTTTTGCAGCTTCATTCATATTCAAACTCTAAATTATCAAAACTTTCTTATAATTCTAACGAGAGAGTCTTAACAAGTCAAGATATTATAAACATCTTACCAAAAACCGAAGAACGCCACGCCCC

Coding sequence (CDS)

ATGGCCACCGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCGAGATTCCTTACTGGTTCTTCCGGCAAACTCCACCGTATGCTGTCGGTTAAACCAGTCACTGCTTCGTCTTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCATACTTAAATGGCAGTCTTCCAGGGGACAATGGATTTGACCCACTGTCTCTAGCCGAGGACCCAGAGAACTTGAAGTGGTTCGTGCAAGCGGAGCTGGTGAACGGCCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTCTTCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATCCTTTTCCATTACGTGGAAATCCGAAGGTGGCAGGACATCAAGAACCCCGGCAGCGTGAACCAAGACCCCATCTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGTTACCCCGGTGGGATTTTCAACCCCCTCAATTTCGCTCCCACTCAGGAAGCCAAAGAGAAGGAACTAGCCAATGGGAGGCTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAACGTGACAGGGAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTGCAGACGTTCAGTGGCAACTAA

Protein sequence

MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFSGN

Homology

[Close]

BLAST of CmoCh10G002130 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 3.5e-127
Identity = 218/251 (86.85%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASS-SSSFKVEAKKGEWLPG 60
           MATVTT ASA++FRPC ++ RFLTGSSG+L+R LS   + +S+ +SSFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
           L SP YL GSL GDNGFDPL LAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISD 240
            EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIVQTFS 251
           PWHNTIVQTF+
Sbjct: 241 PWHNTIVQTFN 251

[Close]

BLAST of CmoCh10G002130 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 5.9e-127
Identity = 217/252 (86.11%), Postives = 229/252 (90.87%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAA+F PC  +SRFL GSSGKL+R ++ +PV  S S+SFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
            SP YL GSLPGDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFT IGI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           EVGYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFI+QHNVTGKGPF+NLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQT  GN
Sbjct: 241 WHNTIVQTLGGN 252

[Close]

BLAST of CmoCh10G002130 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-88
Identity = 154/200 (77.00%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 53  KGEWLPGLPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLP 112
           KG WLPGL SPAYL+GSL GDNGFDPL+LAEDPE+L+WFVQA++VNGRWAMLGVAGML+P
Sbjct: 33  KGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIP 92

Query: 113 EVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 172
           EV TK G++NAP+W    GK  YFASSST   +  +   YVEIRRWQDIKNPGSVNQDPI
Sbjct: 93  EVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPI 152

Query: 173 FKQYSLPPNEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFE 232
           FK YSLPP+E GYPG +FNPLNFAP  E KEKELANGRLAMLAFLGF+VQHNV GKGPFE
Sbjct: 153 FKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFE 212

Query: 233 NLLQHISDPWHNTIVQTFSG 252
           NL QH++DPWHNTI+QT SG
Sbjct: 213 NLQQHLADPWHNTIIQTISG 230

[Close]

BLAST of CmoCh10G002130 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.9e-62
Identity = 124/253 (49.01%), Postives = 158/253 (62.45%), Query Frame = 0


Query: 6   TQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGE--WLPGLPSP 65
           + A AA+  P      FL G   +L + L+V  V+   +S   V A      W PG   P
Sbjct: 8   SSAIAAISSP-----SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPP 67

Query: 66  AYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINA 125
            +L+GSLPGD GFDPL L+ DP++LKW VQAE+V+ RWAMLG AG+ +PE  TKIGI+N 
Sbjct: 68  EWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNT 127

Query: 126 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 185
           P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   +VG
Sbjct: 128 PSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVG 187

Query: 186 YPGGI-FNPLNF-----APTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHI 245
           YPGG+ F+PL +     A  +E + KE+ NGRLAMLA +G   QH  TG GP +NL  H+
Sbjct: 188 YPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 247

Query: 246 SDPWHNTIVQTFS 251
           +DP H TI   F+
Sbjct: 248 ADPGHATIFAAFT 255

[Close]

BLAST of CmoCh10G002130 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.7e-62
Identity = 116/240 (48.33%), Postives = 152/240 (63.33%), Query Frame = 0


Query: 17  AARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGF 76
           A ++ FL G   ++ + ++     + + S+   +  +  W PG   P +L+GSLPGD GF
Sbjct: 29  ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGF 88

Query: 77  DPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFA 136
           DPL L  DPE+LKW  QAELV+ RWAMLG AG+ +PE  TKIG++N P WY AG+ EYF 
Sbjct: 89  DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT 148

Query: 137 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF- 196
            ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL + 
Sbjct: 149 DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208

Query: 197 ----APTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFS 251
               A  +E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI   FS
Sbjct: 209 SGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CmoCh10G002130 vs. ExPASy TrEMBL
Match: A0A6J1E151 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111429846 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.2e-144
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTFSGN
Sbjct: 241 WHNTIVQTFSGN 252

[Close]

BLAST of CmoCh10G002130 vs. ExPASy TrEMBL
Match: A0A6J1JG60 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484821 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.2e-143
Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPV ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTFSGN
Sbjct: 241 WHNTIVQTFSGN 252

[Close]

BLAST of CmoCh10G002130 vs. ExPASy TrEMBL
Match: A0A5A7UWR2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002520 PE=3 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.1e-139
Identity = 242/252 (96.03%), Postives = 247/252 (98.02%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKLHR+LSVKPV+ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTF GN
Sbjct: 241 WHNTIVQTFGGN 252

[Close]

BLAST of CmoCh10G002130 vs. ExPASy TrEMBL
Match: A0A1S3BV45 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493999 PE=3 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.1e-139
Identity = 242/252 (96.03%), Postives = 247/252 (98.02%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKLHR+LSVKPV+ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTF GN
Sbjct: 241 WHNTIVQTFGGN 252

[Close]

BLAST of CmoCh10G002130 vs. ExPASy TrEMBL
Match: A0A0A0LSB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G009810 PE=3 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.8e-137
Identity = 238/252 (94.44%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKL R+LSVKPV+ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSP YLNGSLPGDNGFDPL LAEDPENL+W+VQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           E GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTF GN
Sbjct: 241 WHNTIVQTFGGN 252

[Close]

BLAST of CmoCh10G002130 vs. NCBI nr
Match: XP_022921659.1 (chlorophyll a-b binding protein 4, chloroplastic [Cucurbita moschata] >KAG6589513.1 Chlorophyll a-b binding protein 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023200.1 Chlorophyll a-b binding protein 4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 520.8 bits (1340), Expect = 6.7e-144
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTFSGN
Sbjct: 241 WHNTIVQTFSGN 252

[Close]

BLAST of CmoCh10G002130 vs. NCBI nr
Match: XP_022987200.1 (chlorophyll a-b binding protein 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 518.8 bits (1335), Expect = 2.5e-143
Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPV ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTFSGN
Sbjct: 241 WHNTIVQTFSGN 252

[Close]

BLAST of CmoCh10G002130 vs. NCBI nr
Match: XP_023516219.1 (chlorophyll a-b binding protein P4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 517.7 bits (1332), Expect = 5.6e-143
Identity = 250/252 (99.21%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPV ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPLSLAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTFSGN
Sbjct: 241 WHNTIVQTFSGN 252

[Close]

BLAST of CmoCh10G002130 vs. NCBI nr
Match: XP_008453211.1 (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA0057949.1 chlorophyll a-b binding protein P4 [Cucumis melo var. makuwa])

HSP 1 Score: 504.2 bits (1297), Expect = 6.5e-139
Identity = 242/252 (96.03%), Postives = 247/252 (98.02%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKLHR+LSVKPV+ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTF GN
Sbjct: 241 WHNTIVQTFGGN 252

[Close]

BLAST of CmoCh10G002130 vs. NCBI nr
Match: XP_038880569.1 (chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida])

HSP 1 Score: 502.3 bits (1292), Expect = 2.5e-138
Identity = 241/252 (95.63%), Postives = 246/252 (97.62%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGL 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKLHR LSVKPV+ASSSSSFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
           PSPAYLNGSLPGDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 240
           E GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTFSGN 253
           WHNTIVQTF GN
Sbjct: 241 WHNTIVQTFGGN 252

[Close]

BLAST of CmoCh10G002130 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 455.7 bits (1171), Expect = 2.5e-128
Identity = 218/251 (86.85%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASS-SSSFKVEAKKGEWLPG 60
           MATVTT ASA++FRPC ++ RFLTGSSG+L+R LS   + +S+ +SSFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
           L SP YL GSL GDNGFDPL LAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISD 240
            EVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIVQTFS 251
           PWHNTIVQTF+
Sbjct: 241 PWHNTIVQTFN 251

[Close]

BLAST of CmoCh10G002130 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-63
Identity = 124/253 (49.01%), Postives = 158/253 (62.45%), Query Frame = 0


Query: 6   TQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVTASSSSSFKVEAKKGE--WLPGLPSP 65
           + A AA+  P      FL G   +L + L+V  V+   +S   V A      W PG   P
Sbjct: 8   SSAIAAISSP-----SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPP 67

Query: 66  AYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINA 125
            +L+GSLPGD GFDPL L+ DP++LKW VQAE+V+ RWAMLG AG+ +PE  TKIGI+N 
Sbjct: 68  EWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNT 127

Query: 126 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 185
           P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   +VG
Sbjct: 128 PSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVG 187

Query: 186 YPGGI-FNPLNF-----APTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHI 245
           YPGG+ F+PL +     A  +E + KE+ NGRLAMLA +G   QH  TG GP +NL  H+
Sbjct: 188 YPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 247

Query: 246 SDPWHNTIVQTFS 251
           +DP H TI   F+
Sbjct: 248 ADPGHATIFAAFT 255

[Close]

BLAST of CmoCh10G002130 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 214.5 bits (545), Expect = 9.5e-56
Identity = 112/232 (48.28%), Postives = 151/232 (65.09%), Query Frame = 0


Query: 26  SSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLSLAEDP 85
           SS    R+ SVK      + +  VE  +  WLPGL  P YL+G+L GD GFDPL L EDP
Sbjct: 21  SSVITRRISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDP 80

Query: 86  ENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVI 145
           E+LKW+VQAELV+ R+AMLGVAG+L  ++    GI N P WY+AG  ++ FAS+ TL V+
Sbjct: 81  ESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVV 140

Query: 146 EFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYPGG-IFNPLNFAP---- 205
           +F+L  + E +R+ D  +PGS  ++  F    + +L   E GYPGG + NPL  A     
Sbjct: 141 QFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQN 200

Query: 206 TQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQT 249
             + K KE+ NGRLAM+A LGF VQ +VT  GP +NL++H+S+PWH TI+QT
Sbjct: 201 AHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

[Close]

BLAST of CmoCh10G002130 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 214.5 bits (545), Expect = 9.5e-56
Identity = 112/232 (48.28%), Postives = 151/232 (65.09%), Query Frame = 0


Query: 26  SSGKLHRMLSVKPVTASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLSLAEDP 85
           SS    R+ SVK      + +  VE  +  WLPGL  P YL+G+L GD GFDPL L EDP
Sbjct: 21  SSVITRRISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDP 80

Query: 86  ENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVI 145
           E+LKW+VQAELV+ R+AMLGVAG+L  ++    GI N P WY+AG  ++ FAS+ TL V+
Sbjct: 81  ESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVV 140

Query: 146 EFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYPGG-IFNPLNFAP---- 205
           +F+L  + E +R+ D  +PGS  ++  F    + +L   E GYPGG + NPL  A     
Sbjct: 141 QFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQN 200

Query: 206 TQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQT 249
             + K KE+ NGRLAM+A LGF VQ +VT  GP +NL++H+S+PWH TI+QT
Sbjct: 201 AHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

[Close]

BLAST of CmoCh10G002130 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-54
Identity = 108/262 (41.22%), Postives = 150/262 (57.25%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLTGSS--GKL--HRMLSVKPVTASSSSSFKVEAKKGEW 60
           + +  T +++ V  P   R    + SS  G+L   R++ V+     SS    +   +  W
Sbjct: 9   LTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW 68

Query: 61  LPGLPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFT 120
            PG   P +L+GSLPGD GFDPL L  DP+ LKWF QAEL++ RWAML V G+++PE   
Sbjct: 69  FPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLE 128

Query: 121 KIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 180
           ++G I    WYDAG  EYFA S+TLFV + +L  + E RRW D+  PGSV+ +P +    
Sbjct: 129 RLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKV 188

Query: 181 LPPNEVGYPGGIFNPLNF------APTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 240
            P  +VGYPGG++            P    + KE+ NGRLAMLAFLGF  Q   T + P 
Sbjct: 189 NPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPI 248

Query: 241 ENLLQHISDPWHNTIVQTFSGN 253
           ENL+ H++DP H  +   F+ +
Sbjct: 249 ENLMAHLADPGHCNVFSAFTSH 270

The following BLAST results are available for this feature:

BLAST of CmoCh10G002130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27521	3.5e-127	86.85	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SQL2	5.9e-127	86.11	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
Q36718	1.1e-88	77.00	Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga...	[more]
Q9SYW8	3.9e-62	49.01	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	8.7e-62	48.33	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of CmoCh10G002130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E151	3.2e-144	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JG60	1.2e-143	99.60	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7UWR2	3.1e-139	96.03	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BV45	3.1e-139	96.03	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LSB4	3.8e-137	94.44	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of CmoCh10G002130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921659.1	6.7e-144	100.00	chlorophyll a-b binding protein 4, chloroplastic [Cucurbita moschata] >KAG658951...	[more]
XP_022987200.1	2.5e-143	99.60	chlorophyll a-b binding protein 4, chloroplastic [Cucurbita maxima]	[more]
XP_023516219.1	5.6e-143	99.21	chlorophyll a-b binding protein P4, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_008453211.1	6.5e-139	96.03	PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA...	[more]
XP_038880569.1	2.5e-138	95.63	chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh10G002130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47470.1	2.5e-128	86.85	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	2.8e-63	49.01	photosystem I light harvesting complex gene 2	[more]
AT1G45474.1	9.5e-56	48.28	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	9.5e-56	48.28	photosystem I light harvesting complex gene 5	[more]
AT1G19150.1	3.1e-54	41.22	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..222 e-value: 9.0E-49 score: 166.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 63..242 e-value: 1.9E-67 score: 228.8
None	No IPR available	PANTHER	PTHR21649:SF109	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..252
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 53..249
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G002130.1	CmoCh10G002130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009409	response to cold
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009645	response to low light intensity stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding