CmoCh10G001870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G001870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g74750-like
LocationCmo_Chr10: 853163 .. 855287 (-)
RNA-Seq ExpressionCmoCh10G001870
SyntenyCmoCh10G001870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTAGGAAAAAAGCTGGACAGGCTGAGGTGAAAAAAATGCGGAGATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGTTCCTCTCTCTCTCTCTCTCTTAGCGCTCTCTTCTTCTGCAGAACGAGCTTGTTTGCTTTCTATTTTTGGTTCGTTAATGGCTGCTCAGTACTCTTTTAGGTCGTCTTTGGTCCCATTTTTGGAATTGGTTATATTGGTTTGATTATGCTTTTTTAATTTGTGGTGGAAGGGTTGGTTCATGTTTCAGTTTGTTCGTATTTGTTTTCGATGAAATTGAATTACGTCTGTTGAATTTTTATCGTCAATTAGTGGTTTTCTGAAGAATTCGTGACAGATCGTCAAGTAGTGATTATGTTGCAAGCAAAGCAGATTGACAGTTTCAAACCGGGACAGATCATTTTTTTTCTGTGGTGTTACACAAAATGGGGCGATCTGTTGAACTCGCTTGATCAATTCAATTTAATCCATATGTTTAGGTTTGAGTTATCAATTAACTTAGGTTGGGATAGGTTCAAATAAAAAACTCAATGTAACTCAACGTAGGGTACTCTATAGTTGGGTTGAGCGGAACTAATTCAAATTTATTTAATTTCATAATTATTTTTTTCTCTATTTGGAAGGTAGTTCTTCAAAATATATATTGAAATTAAATGGTAAGTCTTGACTCAATATTTGGAAATAAATAATGACCCTAACAACTCAAACTAATCCAATCTAAATGTTTTCTAGTTAATTTAGGTATGATTTATTATTTAATAAGGTTGCTTAGGTTGAAAATTTTGTTTGGAAATAAATAATGAACTTAACAAAAGTAATTATGTCTCATGAAACTGACGATGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAACTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGTGAGCTTCTTCTCTGACTTTGTGAATTTTAAAGTCCCCTTATCTGACTATGAAAGAACATTTAGCTCATTTAAAATTTGCATGGTTGATCTTGCCCGGTCCATTTCTTCTGTGAAACCTTAAAAAATCAAACATCTAAGAAGAGAGAACATTCCTATAGATTTCAAGCCTCAAAGTAGTAGTAACCATCATGGTCCAAATTGCAAGGCTGAGCAATTCAATAATTATGTTAAAGGCTCAAAGTAAGTTCCAGAGGCTAGGATGCGAAAGTCAGTGGTATTTCATAATATTTCCTCAGAAAATTGTGATAAATTAAAGGACTATACCAAAGAGAACAAGAGTTTATTCAAACAGCTTTGGCCATAGGTTCATAGTTCACAAAGTCTTCCAAGAATTTGAAAAAACTTGCCGATAATTTTAAAAGCTCAATAGGATGAAACCAATCGCTCCCTGTTTTTTAATGCCCCATATGTTATGGAAAGTGTTTTTTGCGTATTGCAACAACTTAAATGGGCCCTGTTTCTGAAGAGGCTCTTGGAAAATTGAACAATTCAATAGATGCATACCAGGCCAACCAAATTCTGAAGTGGGTAGATTACCACTCTGTTGCTCTTCTTGTTGTTGTTGTTGTTTTTTTTTTTTTTTTTTTAATTGATTAAAGCGCATGGCTAGGTTTAGACATGATGGACACACTTGTACTAGTATGATTGGCCTCCTTAGTCGTGCCAAACAGTTTGGTGCAATAAATAGACTGCTTTATCAAATGATCAAGGATGGGTATCAGCCCAATGTCGTAACATGTAATTGTATAATTCATTGTTATGGTTGTGCAAACTACTTGCAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG

mRNA sequence

TCGTAGGAAAAAAGCTGGACAGGCTGAGGTGAAAAAAATGCGGAGATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG

Coding sequence (CDS)

ATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG

Protein sequence

MGEGSAASLSLRSTALIHGYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
Homology
BLAST of CmoCh10G001870 vs. ExPASy Swiss-Prot
Match: Q9SSF9 (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-07
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG EPD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Sbjct: 419 QMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGK 476

BLAST of CmoCh10G001870 vs. ExPASy Swiss-Prot
Match: Q8GYP6 (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX=3702 GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-06
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Sbjct: 424 QMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGK 481

BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A6J1E552 (pentatricopeptide repeat-containing protein At1g74750-like OS=Cucurbita moschata OX=3662 GN=LOC111430033 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 25 QEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIR 84
          +EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIR
Sbjct: 28 KEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIR 87

Query: 85 SCI 88
          SCI
Sbjct: 88 SCI 90

BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A5N6RSC0 (Smr domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019013 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV-LTINCLGK 81
           + QEAG EPD VTYCTLIDIH+KS  LD+   CM    + A L     T  + INCLGK
Sbjct: 446 QMQEAGCEPDRVTYCTLIDIHAKSGFLDVAM-CMYERMQEAGLSPDTFTYSVIINCLGK 503

BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A6P5EZZ7 (pentatricopeptide repeat-containing protein At1g18900-like isoform X1 OS=Ananas comosus OX=4615 GN=LOC109709040 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG EPD VTYCTLIDIH+K+  LDI  +  R  + +          + +NCLGK
Sbjct: 381 EMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYRRMQEMGLSPDTFTYSVMVNCLGK 438

BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A2G5D9L3 (Smr domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02500129v1 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 22  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           +K QE G EPD VTYCTLIDIH+K+  LD   +  R  +            + INCLGK
Sbjct: 424 YKMQEVGCEPDRVTYCTLIDIHAKAGFLDFAMDIYRKMQEAGLTPDTFTYSVMINCLGK 482

BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A7J6WRU8 (Pentatricopeptide repeat-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_011571 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 22  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           +K QE G EPD VTYCTLIDIH+K+  LD   +  R  +            + INCLGK
Sbjct: 425 YKMQEVGCEPDRVTYCTLIDIHAKAGFLDFAMDIYRKMQEAGLTPDTFTYSVMINCLGK 483

BLAST of CmoCh10G001870 vs. NCBI nr
Match: XP_022921918.1 (pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 25 QEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIR 84
          +EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIR
Sbjct: 28 KEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIR 87

Query: 85 SCI 88
          SCI
Sbjct: 88 SCI 90

BLAST of CmoCh10G001870 vs. NCBI nr
Match: KAG7023176.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 26  EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRS 85
           EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRS
Sbjct: 62  EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRS 121

Query: 86  CI 88
           CI
Sbjct: 122 CI 123

BLAST of CmoCh10G001870 vs. NCBI nr
Match: XP_042512246.1 (pentatricopeptide repeat-containing protein At1g18900-like isoform X2 [Macadamia integrifolia])

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 19  GYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCL 78
           G  ++ QEAG EPD VTYCTLIDIH+K+  LD+  +  R  + +          + INCL
Sbjct: 436 GVLYQMQEAGCEPDRVTYCTLIDIHAKAGFLDVALDMYRRMQEVGLSPDTFTYSVIINCL 495

Query: 79  GK 81
           GK
Sbjct: 496 GK 497

BLAST of CmoCh10G001870 vs. NCBI nr
Match: XP_042512243.1 (pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia] >XP_042512244.1 pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia] >XP_042512245.1 pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia])

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 19  GYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCL 78
           G  ++ QEAG EPD VTYCTLIDIH+K+  LD+  +  R  + +          + INCL
Sbjct: 436 GVLYQMQEAGCEPDRVTYCTLIDIHAKAGFLDVALDMYRRMQEVGLSPDTFTYSVIINCL 495

Query: 79  GK 81
           GK
Sbjct: 496 GK 497

BLAST of CmoCh10G001870 vs. NCBI nr
Match: KAF9606274.1 (hypothetical protein IFM89_024183 [Coptis chinensis])

HSP 1 Score: 57.4 bits (137), Expect = 7.2e-05
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 22  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV---LTINCL 81
           +K QEAG EPD VTYCTLIDIH+K+  LD+    M   KR+   R+   T    + INCL
Sbjct: 435 YKMQEAGCEPDRVTYCTLIDIHAKAGFLDV---AMDMYKRMQEARLSPDTFTYSVMINCL 493

BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-08
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG EPD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Sbjct: 419 QMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGK 476

BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G18900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Sbjct: 424 QMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGK 481

BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G18900.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Sbjct: 424 QMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGK 481

BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G18900.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 23  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK 81
           + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Sbjct: 424 QMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGK 481

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SSF96.1e-0746.55Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX... [more]
Q8GYP65.2e-0644.83Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1E5521.9e-2798.41pentatricopeptide repeat-containing protein At1g74750-like OS=Cucurbita moschata... [more]
A0A5N6RSC06.0e-0554.24Smr domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019013 PE=... [more]
A0A6P5EZZ77.8e-0546.55pentatricopeptide repeat-containing protein At1g18900-like isoform X1 OS=Ananas ... [more]
A0A2G5D9L37.8e-0545.76Smr domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02500129v... [more]
A0A7J6WRU87.8e-0545.76Pentatricopeptide repeat-containing protein OS=Thalictrum thalictroides OX=46969... [more]
Match NameE-valueIdentityDescription
XP_022921918.13.9e-2798.41pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata][more]
KAG7023176.15.1e-27100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_042512246.14.2e-0545.16pentatricopeptide repeat-containing protein At1g18900-like isoform X2 [Macadamia... [more]
XP_042512243.14.2e-0545.16pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia... [more]
KAF9606274.17.2e-0551.61hypothetical protein IFM89_024183 [Coptis chinensis][more]
Match NameE-valueIdentityDescription
AT1G74750.14.4e-0846.55Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18900.13.7e-0744.83Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18900.23.7e-0744.83Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18900.33.7e-0744.83Pentatricopeptide repeat (PPR) superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G001870.1CmoCh10G001870.1mRNA