CmoCh10G001870 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGTAGGAAAAAAGCTGGACAGGCTGAGGTGAAAAAAATGCGGAGATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGTTCCTCTCTCTCTCTCTCTCTTAGCGCTCTCTTCTTCTGCAGAACGAGCTTGTTTGCTTTCTATTTTTGGTTCGTTAATGGCTGCTCAGTACTCTTTTAGGTCGTCTTTGGTCCCATTTTTGGAATTGGTTATATTGGTTTGATTATGCTTTTTTAATTTGTGGTGGAAGGGTTGGTTCATGTTTCAGTTTGTTCGTATTTGTTTTCGATGAAATTGAATTACGTCTGTTGAATTTTTATCGTCAATTAGTGGTTTTCTGAAGAATTCGTGACAGATCGTCAAGTAGTGATTATGTTGCAAGCAAAGCAGATTGACAGTTTCAAACCGGGACAGATCATTTTTTTTCTGTGGTGTTACACAAAATGGGGCGATCTGTTGAACTCGCTTGATCAATTCAATTTAATCCATATGTTTAGGTTTGAGTTATCAATTAACTTAGGTTGGGATAGGTTCAAATAAAAAACTCAATGTAACTCAACGTAGGGTACTCTATAGTTGGGTTGAGCGGAACTAATTCAAATTTATTTAATTTCATAATTATTTTTTTCTCTATTTGGAAGGTAGTTCTTCAAAATATATATTGAAATTAAATGGTAAGTCTTGACTCAATATTTGGAAATAAATAATGACCCTAACAACTCAAACTAATCCAATCTAAATGTTTTCTAGTTAATTTAGGTATGATTTATTATTTAATAAGGTTGCTTAGGTTGAAAATTTTGTTTGGAAATAAATAATGAACTTAACAAAAGTAATTATGTCTCATGAAACTGACGATGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAACTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGTGAGCTTCTTCTCTGACTTTGTGAATTTTAAAGTCCCCTTATCTGACTATGAAAGAACATTTAGCTCATTTAAAATTTGCATGGTTGATCTTGCCCGGTCCATTTCTTCTGTGAAACCTTAAAAAATCAAACATCTAAGAAGAGAGAACATTCCTATAGATTTCAAGCCTCAAAGTAGTAGTAACCATCATGGTCCAAATTGCAAGGCTGAGCAATTCAATAATTATGTTAAAGGCTCAAAGTAAGTTCCAGAGGCTAGGATGCGAAAGTCAGTGGTATTTCATAATATTTCCTCAGAAAATTGTGATAAATTAAAGGACTATACCAAAGAGAACAAGAGTTTATTCAAACAGCTTTGGCCATAGGTTCATAGTTCACAAAGTCTTCCAAGAATTTGAAAAAACTTGCCGATAATTTTAAAAGCTCAATAGGATGAAACCAATCGCTCCCTGTTTTTTAATGCCCCATATGTTATGGAAAGTGTTTTTTGCGTATTGCAACAACTTAAATGGGCCCTGTTTCTGAAGAGGCTCTTGGAAAATTGAACAATTCAATAGATGCATACCAGGCCAACCAAATTCTGAAGTGGGTAGATTACCACTCTGTTGCTCTTCTTGTTGTTGTTGTTGTTTTTTTTTTTTTTTTTTTAATTGATTAAAGCGCATGGCTAGGTTTAGACATGATGGACACACTTGTACTAGTATGATTGGCCTCCTTAGTCGTGCCAAACAGTTTGGTGCAATAAATAGACTGCTTTATCAAATGATCAAGGATGGGTATCAGCCCAATGTCGTAACATGTAATTGTATAATTCATTGTTATGGTTGTGCAAACTACTTGCAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG TCGTAGGAAAAAAGCTGGACAGGCTGAGGTGAAAAAAATGCGGAGATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG ATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG MGEGSAASLSLRSTALIHGYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI Homology
BLAST of CmoCh10G001870 vs. ExPASy Swiss-Prot
Match: Q9SSF9 (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 6.1e-07 Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of CmoCh10G001870 vs. ExPASy Swiss-Prot
Match: Q8GYP6 (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX=3702 GN=At1g18900 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 5.2e-06 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A6J1E552 (pentatricopeptide repeat-containing protein At1g74750-like OS=Cucurbita moschata OX=3662 GN=LOC111430033 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27 Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A5N6RSC0 (Smr domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019013 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05 Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0
BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A6P5EZZ7 (pentatricopeptide repeat-containing protein At1g18900-like isoform X1 OS=Ananas comosus OX=4615 GN=LOC109709040 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05 Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0
BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A2G5D9L3 (Smr domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02500129v1 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05 Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0
BLAST of CmoCh10G001870 vs. ExPASy TrEMBL
Match: A0A7J6WRU8 (Pentatricopeptide repeat-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_011571 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05 Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0
BLAST of CmoCh10G001870 vs. NCBI nr
Match: XP_022921918.1 (pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata]) HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27 Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of CmoCh10G001870 vs. NCBI nr
Match: KAG7023176.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of CmoCh10G001870 vs. NCBI nr
Match: XP_042512246.1 (pentatricopeptide repeat-containing protein At1g18900-like isoform X2 [Macadamia integrifolia]) HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05 Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0
BLAST of CmoCh10G001870 vs. NCBI nr
Match: XP_042512243.1 (pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia] >XP_042512244.1 pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia] >XP_042512245.1 pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia]) HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05 Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0
BLAST of CmoCh10G001870 vs. NCBI nr
Match: KAF9606274.1 (hypothetical protein IFM89_024183 [Coptis chinensis]) HSP 1 Score: 57.4 bits (137), Expect = 7.2e-05 Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 54.7 bits (130), Expect = 4.4e-08 Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G18900.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G18900.2 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of CmoCh10G001870 vs. TAIR 10
Match: AT1G18900.3 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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