CmoCh10G001780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G001780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Dynein light chain, type 1/2
Location	Cmo_Chr10: 805926 .. 806984 (-)
RNA-Seq Expression	CmoCh10G001780
Synteny	CmoCh10G001780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTATGGAATTCCATTGGTTTGGTTTTTTTTTTTTTTTGAAATTTAAAAACTAAAATAGAACAATAAATTCAGTGGTCAATTTCGATAAGGGACTGTGTCTGCAGAAGCAGTTAAGTTAGATTGACCATCAACAGCCCCATATCTCACCCACACGACTACCCACCACCCTCTGCATTCCCAAGCTCTCAATCTCACAAATCCATGGCTTCTCACGAAACTTCCTCATCCATCGACCCCAACCGTAGAAACCATCCCGCCGCCGCCGCCGCCGCCTCCGTCGTCACTCTCGCCGCTGTCTCTCCCAACCCAACATCATCAAAACTAGATCCCATAACCCCTTTGTCGGACTCAGACAAGTTGTCAAAATCACACCCACCTTCCCCCAAAATGGTCGGCCCCAGAACAGTGCAAATGGTAGCCAAAAAACCCAACGAAGCCCCTCTGGAACGCTCTACCACAGAGAAATTCAACGACTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACAGCCAAAGAAAGGGAAATGAAGCAGCTCCTAAAGGAACATGAACATCTCACTCGCAGGCTCTCTGTTTCTCTTTCTTCATCACGGAGTGGAAGAAGAAGAAGATCAATCTGTGGCTCACAGATTGAATTAGCAGACGTGTTTGCTAACAACGGTGTCAAAGTGGTTTCGGCCGACATGCCGCCGTTTATGCAGATCCACGCTGTCGATTGCGCTAGAAAAGCCCACGATAGTATGGAAAAGTTCACTTCCAAATCCCTTGCATTGACTCTCAAGAAGGTACACACGAATCGATTACCCAACTTTTTTTTTTTTTAGAAAAAAGGGTCATTTTGTTCAGAATGTTGATTTGGGTTGGCTGAATTTGGCAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCCTTTGTGACACACTCAGTGGGTGGATTTCTGTACTTCTCCATGGCTCAAAAGCTTTACATCCTGCTCTTCAAAACCACTGTACAAAGAGCCAATTAGAAACACTCAATCGCTGA

mRNA sequence

TTTTTTTATGGAATTCCATTGGTTTGGTTTTTTTTTTTTTTTGAAATTTAAAAACTAAAATAGAACAATAAATTCAGTGGTCAATTTCGATAAGGGACTGTGTCTGCAGAAGCAGTTAAGTTAGATTGACCATCAACAGCCCCATATCTCACCCACACGACTACCCACCACCCTCTGCATTCCCAAGCTCTCAATCTCACAAATCCATGGCTTCTCACGAAACTTCCTCATCCATCGACCCCAACCGTAGAAACCATCCCGCCGCCGCCGCCGCCGCCTCCGTCGTCACTCTCGCCGCTGTCTCTCCCAACCCAACATCATCAAAACTAGATCCCATAACCCCTTTGTCGGACTCAGACAAGTTGTCAAAATCACACCCACCTTCCCCCAAAATGGTCGGCCCCAGAACAGTGCAAATGGTAGCCAAAAAACCCAACGAAGCCCCTCTGGAACGCTCTACCACAGAGAAATTCAACGACTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACAGCCAAAGAAAGGGAAATGAAGCAGCTCCTAAAGGAACATGAACATCTCACTCGCAGGCTCTCTGTTTCTCTTTCTTCATCACGGAGTGGAAGAAGAAGAAGATCAATCTGTGGCTCACAGATTGAATTAGCAGACGTGTTTGCTAACAACGGTGTCAAAGTGGTTTCGGCCGACATGCCGCCGTTTATGCAGATCCACGCTGTCGATTGCGCTAGAAAAGCCCACGATAGTATGGAAAAGTTCACTTCCAAATCCCTTGCATTGACTCTCAAGAAGGGTCATTTTGTTCAGAATGTTGATTTGGGTTGGCTGAATTTGGCAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCCTTTGTGACACACTCAGTGGGTGGATTTCTGTACTTCTCCATGGCTCAAAAGCTTTACATCCTGCTCTTCAAAACCACTGTACAAAGAGCCAATTAGAAACACTCAATCGCTGA

Coding sequence (CDS)

ATGGCTTCTCACGAAACTTCCTCATCCATCGACCCCAACCGTAGAAACCATCCCGCCGCCGCCGCCGCCGCCTCCGTCGTCACTCTCGCCGCTGTCTCTCCCAACCCAACATCATCAAAACTAGATCCCATAACCCCTTTGTCGGACTCAGACAAGTTGTCAAAATCACACCCACCTTCCCCCAAAATGGTCGGCCCCAGAACAGTGCAAATGGTAGCCAAAAAACCCAACGAAGCCCCTCTGGAACGCTCTACCACAGAGAAATTCAACGACTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACAGCCAAAGAAAGGGAAATGAAGCAGCTCCTAAAGGAACATGAACATCTCACTCGCAGGCTCTCTGTTTCTCTTTCTTCATCACGGAGTGGAAGAAGAAGAAGATCAATCTGTGGCTCACAGATTGAATTAGCAGACGTGTTTGCTAACAACGGTGTCAAAGTGGTTTCGGCCGACATGCCGCCGTTTATGCAGATCCACGCTGTCGATTGCGCTAGAAAAGCCCACGATAGTATGGAAAAGTTCACTTCCAAATCCCTTGCATTGACTCTCAAGAAGGGTCATTTTGTTCAGAATGTTGATTTGGGTTGGCTGAATTTGGCAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCCTTTGTGACACACTCAGTGGGTGGATTTCTGTACTTCTCCATGGCTCAAAAGCTTTACATCCTGCTCTTCAAAACCACTGTACAAAGAGCCAATTAGAAACACTCAATCGCTGA

Protein sequence

MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWGLRAGMALYCGEEFWVLCDTLSGWISVLLHGSKALHPALQNHCTKSQLETLNR

Homology

[Close]

BLAST of CmoCh10G001780 vs. ExPASy TrEMBL
Match: A0A6J1E0M2 (uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC111429742 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.7e-98
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60
           MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS
Sbjct: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60

Query: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120
           PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL
Sbjct: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180
           TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD
Sbjct: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180

Query: 181 SMEKFTSKSLALTLKK 197
           SMEKFTSKSLALTLKK
Sbjct: 181 SMEKFTSKSLALTLKK 196

[Close]

BLAST of CmoCh10G001780 vs. ExPASy TrEMBL
Match: A0A5A7UPX5 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002210 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70
Identity = 158/199 (79.40%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSH 60
           MA+H T+S   S+DP+ RN P  AA A VVT A VSP+PTS KLDP TPLSDSD LSKSH
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVA-VVTPAVVSPHPTSPKLDPPTPLSDSDNLSKSH 60

Query: 61  PPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEH 120
           PPSP  VGPRT Q VAKK NE P E +TTEKFN SEE+FE MINCITAKEREMKQLLKEH
Sbjct: 61  PPSP--VGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMINCITAKEREMKQLLKEH 120

Query: 121 EHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARK 180
           EH+TRRLS+SLSSSRSG RRRS  GSQI+L DVFA NG KVVSADMPPFMQIHAVDCARK
Sbjct: 121 EHVTRRLSISLSSSRSG-RRRSFYGSQIQLGDVFAKNGAKVVSADMPPFMQIHAVDCARK 180

Query: 181 AHDSMEKFTSKSLALTLKK 197
           AHDSMEKFTSKSLALTLKK
Sbjct: 181 AHDSMEKFTSKSLALTLKK 195

[Close]

BLAST of CmoCh10G001780 vs. ExPASy TrEMBL
Match: A0A0A0LPA2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008410 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70
Identity = 160/199 (80.40%), Postives = 167/199 (83.92%), Query Frame = 0


Query: 1   MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSH 60
           MA+H T+S   S+DP+ RN P  AA A VVT A VSP+PTS KLD  TPLSDSD LSKS 
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVA-VVTPAVVSPHPTSPKLDSPTPLSDSDNLSKSR 60

Query: 61  PPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEH 120
           PPSP  VGPRT Q VAK PNE P E STTEKFN SEE+FE MINCITAKEREMKQLLKEH
Sbjct: 61  PPSP--VGPRTEQKVAKNPNETPQEHSTTEKFNGSEERFEHMINCITAKEREMKQLLKEH 120

Query: 121 EHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARK 180
           EHLTRRLSVSLSSSRSG RRRS  GSQI+L DVFA NGVKVVSADMPPFMQIHAVDCARK
Sbjct: 121 EHLTRRLSVSLSSSRSG-RRRSFYGSQIQLGDVFAKNGVKVVSADMPPFMQIHAVDCARK 180

Query: 181 AHDSMEKFTSKSLALTLKK 197
           AHDSMEKFTSKSLALTLKK
Sbjct: 181 AHDSMEKFTSKSLALTLKK 195

[Close]

BLAST of CmoCh10G001780 vs. ExPASy TrEMBL
Match: A0A1S3BVI8 (uncharacterized protein LOC103493957 OS=Cucumis melo OX=3656 GN=LOC103493957 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70
Identity = 158/199 (79.40%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSH 60
           MA+H T+S   S+DP+ RN P  AA A VVT A VSP+PTS KLDP TPLSDSD LSKSH
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVA-VVTPAVVSPHPTSPKLDPPTPLSDSDNLSKSH 60

Query: 61  PPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEH 120
           PPSP  VGPRT Q VAKK NE P E +TTEKFN SEE+FE MINCITAKEREMKQLLKEH
Sbjct: 61  PPSP--VGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMINCITAKEREMKQLLKEH 120

Query: 121 EHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARK 180
           EH+TRRLS+SLSSSRSG RRRS  GSQI+L DVFA NG KVVSADMPPFMQIHAVDCARK
Sbjct: 121 EHVTRRLSISLSSSRSG-RRRSFYGSQIQLGDVFAKNGAKVVSADMPPFMQIHAVDCARK 180

Query: 181 AHDSMEKFTSKSLALTLKK 197
           AHDSMEKFTSKSLALTLKK
Sbjct: 181 AHDSMEKFTSKSLALTLKK 195

[Close]

BLAST of CmoCh10G001780 vs. ExPASy TrEMBL
Match: A0A6J1EZR5 (uncharacterized protein LOC111440848 OS=Cucurbita moschata OX=3662 GN=LOC111440848 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.3e-70
Identity = 160/235 (68.09%), Postives = 179/235 (76.17%), Query Frame = 0


Query: 1   MASHETS--------SSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDK 60
           MASH+TS        S +D +RR  P   AAA+     AVSP+PTS KLDP TPLSDSD 
Sbjct: 15  MASHQTSLQRLLSPPSKMDLHRRTQPTTPAAAT-----AVSPHPTSPKLDPTTPLSDSDN 74

Query: 61  LSKSHPPS-----------PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMIN 120
           LSKSHPPS           PKMVGPRTV  +AKKPNE P + STTEKFNDSEEKFERMIN
Sbjct: 75  LSKSHPPSPKVVPVSLHSNPKMVGPRTVHKLAKKPNETPRQHSTTEKFNDSEEKFERMIN 134

Query: 121 CITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSA 180
           CIT KEREMKQLL +H+HLTRRLSVSLSSSRSG RR+SICGSQI+LA++FANNGVKVVSA
Sbjct: 135 CITTKEREMKQLLVDHQHLTRRLSVSLSSSRSG-RRKSICGSQIQLAELFANNGVKVVSA 194

Query: 181 DMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWG 217
           DMPPFMQIHAVDCARKAHDSM+ FTSKSLAL+LK+  F  +    W  + G  +G
Sbjct: 195 DMPPFMQIHAVDCARKAHDSMQNFTSKSLALSLKQ-EFDGSYGPAWHCIVGKSFG 242

[Close]

BLAST of CmoCh10G001780 vs. NCBI nr
Match: XP_022921489.1 (uncharacterized protein LOC111429742 [Cucurbita moschata])

HSP 1 Score: 369.0 bits (946), Expect = 3.4e-98
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60
           MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS
Sbjct: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60

Query: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120
           PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL
Sbjct: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180
           TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD
Sbjct: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180

Query: 181 SMEKFTSKSLALTLKK 197
           SMEKFTSKSLALTLKK
Sbjct: 181 SMEKFTSKSLALTLKK 196

[Close]

BLAST of CmoCh10G001780 vs. NCBI nr
Match: KAG7023168.1 (Dynein light chain, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356.7 bits (914), Expect = 1.8e-94
Identity = 191/196 (97.45%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60
           MASHETSSSIDPNRRNHP    AASVVTLAAVSPNPTS KLDPITPLSDSDKLSKSHPPS
Sbjct: 1   MASHETSSSIDPNRRNHP----AASVVTLAAVSPNPTSPKLDPITPLSDSDKLSKSHPPS 60

Query: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120
           PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL
Sbjct: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180
           TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD
Sbjct: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180

Query: 181 SMEKFTSKSLALTLKK 197
           SMEKFTSKSLALTLKK
Sbjct: 181 SMEKFTSKSLALTLKK 192

[Close]

BLAST of CmoCh10G001780 vs. NCBI nr
Match: XP_023516401.1 (uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 3.9e-94
Identity = 191/196 (97.45%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60
           MASHETSSSIDPNRRNHP  AAAASVVTLAAVSPNPTS KLDPITPLSDSDKLSKSHPPS
Sbjct: 1   MASHETSSSIDPNRRNHP--AAAASVVTLAAVSPNPTSPKLDPITPLSDSDKLSKSHPPS 60

Query: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120
           PKMVGPRTVQMVAKKPNEAP E STTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL
Sbjct: 61  PKMVGPRTVQMVAKKPNEAPQEHSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180
           TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD
Sbjct: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180

Query: 181 SMEKFTSKSLALTLKK 197
           SMEKFTSKSLALTLKK
Sbjct: 181 SMEKFTSKSLALTLKK 194

[Close]

BLAST of CmoCh10G001780 vs. NCBI nr
Match: KAG6589483.1 (Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.4 bits (895), Expect = 2.8e-92
Identity = 187/196 (95.41%), Postives = 189/196 (96.43%), Query Frame = 0


Query: 1   MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS 60
           MASHETSSSIDPNRRNHP    AASVVTLAAVSPNPTS KLDPITPLSDSDKLSKSHPPS
Sbjct: 1   MASHETSSSIDPNRRNHP----AASVVTLAAVSPNPTSPKLDPITPLSDSDKLSKSHPPS 60

Query: 61  PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHL 120
           PKMVGPRTVQMVAKKPNEAP E STTEKFN+SEE+FERMINCITAKEREMKQLLKEHEHL
Sbjct: 61  PKMVGPRTVQMVAKKPNEAPQEHSTTEKFNNSEERFERMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180
           TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD
Sbjct: 121 TRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHD 180

Query: 181 SMEKFTSKSLALTLKK 197
           SMEKFTSKSLALTLKK
Sbjct: 181 SMEKFTSKSLALTLKK 192

[Close]

BLAST of CmoCh10G001780 vs. NCBI nr
Match: XP_038879954.1 (uncharacterized protein LOC120071657 [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 3.7e-76
Identity = 170/210 (80.95%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 1   MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSH 60
           MASH TSS   S+DP+RRN P AAAA  VVT A VSP+PTS KLDP TPLSDSD LSKS+
Sbjct: 1   MASHNTSSSSKSMDPHRRNQPPAAAA--VVTPAVVSPHPTSPKLDPTTPLSDSDNLSKSN 60

Query: 61  PPS-----------PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAK 120
           PPS           PKMVGP TVQ VAKKPNE P E STTEKFNDSEE++ERMINCITAK
Sbjct: 61  PPSPKVDSISLHSHPKMVGPITVQKVAKKPNETPQEHSTTEKFNDSEERYERMINCITAK 120

Query: 121 EREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPF 180
           EREMKQLLKEHEHLTRRLSVSLSSSRSG RR+SIC SQI+LADVFANNGVKVVSADMPPF
Sbjct: 121 EREMKQLLKEHEHLTRRLSVSLSSSRSG-RRKSICVSQIQLADVFANNGVKVVSADMPPF 180

Query: 181 MQIHAVDCARKAHDSMEKFTSKSLALTLKK 197
           MQIHAVDCARK HDSMEKFTSKSLALTLKK
Sbjct: 181 MQIHAVDCARKTHDSMEKFTSKSLALTLKK 207

[Close]

BLAST of CmoCh10G001780 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-07
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 156 VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRW 215
           V++++ADMP FMQ HA  CAR   DS+EKF+SK +A  LKK  F +     W  + G  +
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKK-EFDKGYGPAWHCIVGSSF 176

Query: 216 G 217
           G
Sbjct: 177 G 176

The following BLAST results are available for this feature:

BLAST of CmoCh10G001780 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G001780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0M2	1.7e-98	100.00	uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A5A7UPX5	1.5e-70	79.40	Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0LPA2	1.5e-70	80.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008410 PE=4 SV=1	[more]
A0A1S3BVI8	1.5e-70	79.40	uncharacterized protein LOC103493957 OS=Cucumis melo OX=3656 GN=LOC103493957 PE=...	[more]
A0A6J1EZR5	3.3e-70	68.09	uncharacterized protein LOC111440848 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]

BLAST of CmoCh10G001780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921489.1	3.4e-98	100.00	uncharacterized protein LOC111429742 [Cucurbita moschata]	[more]
KAG7023168.1	1.8e-94	97.45	Dynein light chain, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023516401.1	3.9e-94	97.45	uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo]	[more]
KAG6589483.1	2.8e-92	95.41	Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038879954.1	3.7e-76	80.95	uncharacterized protein LOC120071657 [Benincasa hispida]	[more]

BLAST of CmoCh10G001780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	1.3e-07	45.90	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 43..196
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 43..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G001780.1	CmoCh10G001780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding