CmoCh10G001520 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGGGGATGGGATTTTTAATTTACCTATAAAACTTATTCTGAACTTGCTTTGTAGGTCAGTTTTTCTTTTTCATGTGGCTGAAATCGTTTGAAGAGAAGATGATGATTAACCCTGAAAATTTCGCAATCCATCTGTATTTATTTTGAAATTTATCCAAAGGTTTATTTATTTATTTTGAAATTATAGAATCTATAATATTTCATGCACAAAGTAGAGCAATGAACGTGGTAACGTAATTAATATGGGTCCATAGTAACACAACACCCACATGAAGGAAACTAAAAAAATAAATTGGAAATACAAGTAAGATTGGCTGGTGTATATTATTGACACGATTTGAAGTATAAATAATGCTTTTATTTATTTGTAGGTATCATTATTTAAACGCATGCATATACCAAGTGGATTAGGTGGTTTTCTTTTATATTTTTTTAGTGGGGGGTTGATTTTCTTTTTTATAATATTCATTATAAAACATTTAAAGAGAAAAAGAAAGGGAATAATTCGAATTTATTGTAGCCTTATTTATATTGGTGAGAACAACAAGGATGGTGGGTGGGACAGATCAATTCAATCGCTCTTCCAAGTCGGCGCCTAAAAAGGAGAATGAGAAAAGATGTAAAGCTAAATTGAAAAGAAAAAAAGGAACCAACAAAACAATCACAGCATTGAAATTGTTCCATTTCCACTTCAAATGTTGTGTGAAGAACAAAAAAAACAGTATAGGATGTAATCGTAAATGATTGAATAAAGGCTCGATCGCCAAACGTTTGATTTGTAAAGCAAAATATATCCTAATGTAAAAAAAAAAAGAAATCATTCGGGATCGAATTTTCCCCTAAAGAAAAAGAGCTCGAGAATAGATATTGAATTTGACACAATAATTAGTTCGAAGACTTAGTGATACATCAAATCATGAATTCATACAAATTAAAATGTGTATAGTATTTCTTGTATATGCATTTCTTATCTGTCACACATTTGCTGATGCAAAGACATTGAATTTTTTTTTTTTAATTGAAAAAGTCTTCATCTTTCATCATTACTCTGCTTGATCTAACTATATTCTATATTTCATTCTACAGATCATCTTTCAGCTTTGTAACTGAGCCGACCATTTCCCATTAAAATAAACTTGGTTCTGTTACTTCCATGGCTGTGCTGAAACATAACGTATATGGTCATAAAATTGCATTAAAACACAACATTAATCCACTTCTTGGGACATTATTTTCGCTTTATGTGATCAAATAAGGAGATGACACGTGGAAAATGAAGTAGTTAATGGGTGTCTAAATGGGGAATTATGTTGGTCAAATTTTCAAATTGCTCATTACTGGAAATTTGTCAGCTTGTTTGAATGTGTCTGAGCTGTAATCGCTGACTCTAAGAGAGAAATTTGCCGGATACTTAGACGACATAAAAAGGGCGACGGAAAGATCTTCTGCCTCCTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGGTAACCCTTTTCAATCTTACACATATATTTCTTTCTTATATGGATCTTCCTTCAGCTGAGAGCCTTGTTGTGAATGGAATAGATGCATGCTGCTCAAGATATGCCTAATTCCAGATCCTATCCATCATATTCAGTATCTCAAACTGATATAAAATGATCCTATTTCCAATTCTATCTGCACTTTTGGCTAAAATTTTCATGTTGTAATAGTTGAATGATTCCATATCTCATAAGTATCTGATTCCACTCCAGTTTGTCTTTATATATCTCCAGGTTGAAACTTATTCGACAATGAATTTTGCTACCTCAGATGTTGTGTTTGTTAAGATTCTGTTTGTTACTATACAAGGATCATGGTTTGTCTTTAAGAAAATAACTTTCAACCTTTGGATCGAAGAGATATTCCTTAACAAGTAGAGCTATGTTTAGGTTAGCTTGGTTCCCACAGTTCGAACATTATCACCGGTACTGATTCTGTTTTTATGTCTCTGCAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTAATTGGTTGTTGTTGAGTCTTTTTCCGCCTTCAATGACTTCTGCTTGTTTAGTCTATTATCTTCTTCTTTCTTCTCTTTAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTTTTTCTTTTCTTTAATTCATTTTTTGGAAGCTTATCTGCTAAAATCAACACTTATGCTCTGATTCCTAACTACTAGTTGTTGTTATTAACATTTGAAAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTAAATGGCCATTATACAGTTTAAAAGCCTCTAGTTTTTTACTTTCTTCCTGTGGCTATTCTATGAACCATTCACTCAAGTTGTCATCACATTTACAACCTAAACATTCAAATGCTAAAAGGGTACAAAACCTTCCTAATCACCTGTTTTTCTCGAGAGAGAATCAACTATATCATGCAAAAGGAAGAGCTACAGTTCAAGAAATTTCCTTATAATACAACTCGAAATGGTATCACATTAGGAAGTTACAAACTAGGATAGTTGAATGTTGTCCTAAACTAGCTTTCTTTTCATCCCTTCGTGTTGCGTCGATTCAGACTCGAACCTAACCACCCCACTTTTGGAGATGACGGTCTCCTTGATCTAAGGCAATGGAATCTTTGAAGAACTTCTGAACCTTTTAATGGAGGATATAATGTGCTAACCAATCGAGTGATACTCAAATTGCGATAAAACTAGTTGGCTATATTAAGAAAGGCTGTTTTTTTTTTTTTTTTTGCTTCCATCAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACATGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGAGAACACACCAGTTGAGAAGAACTTGATGTTGGATGCAACTGTTATATTGTGCATGAGGAAAAGATAAAGTTACGTTTTTCGTCAATACTTGCGGGTTCGGGTTTGCTATTCTATAGAGTGTACTATAAGAAAAATTTGAGTTTCAATAAATTTTTTGAGTGTGAGCTGAAAACCTTCCATAAGCACTGCAGAAATATGAGATGTACTGTTCTTCTTCTATTCAATTGAGACTATAAGCTATTTTCATTTTTCCATCAACAAGTTTGTTTGTTTGTTGTTGTATGTGAAGTGAATGCTTTGTTTCAGATGATCATAACTTTAAATCACATTTAAACATGCAGAAAGAGGTACAAATTCTTGTATCAGCACTTCCATGAAAGAAAGCTCCTTTCTGATCTTGGGGG ATGGTGGGGGATGGGATTTTTAATTTACCTATAAAACTTATTCTGAACTTGCTTTGTAGAGAGAAATTTGCCGGATACTTAGACGACATAAAAAGGGCGACGGAAAGATCTTCTGCCTCCTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACATGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGAGAACACACCAGTTGAGAAGAACTTGATGTTGGATGCAACTGTTATATTGTGCATGAGGAAAAGATAAAGTTACGTTTTTCGTCAATACTTGCGGGTTCGGGTTTGCTATTCTATAGAGTGTACTATAAGAAAAATTTGAGTTTCAATAAATTTTTTGAGTGTGAGCTGAAAACCTTCCATAAGCACTGCAGAAATATGAGATGTACTGTTCTTCTTCTATTCAATTGAGACTATAAGCTATTTTCATTTTTCCATCAACAAGTTTGTTTGTTTGTTGTTGTATGTGAAGTGAATGCTTTGTTTCAGATGATCATAACTTTAAATCACATTTAAACATGCAGAAAGAGGTACAAATTCTTGTATCAGCACTTCCATGAAAGAAAGCTCCTTTCTGATCTTGGGGG ATGGTGGGGGATGGGATTTTTAATTTACCTATAAAACTTATTCTGAACTTGCTTTGTAGAGAGAAATTTGCCGGATACTTAGACGACATAAAAAGGGCGACGGAAAGATCTTCTGCCTCCTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACATGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGA MVGDGIFNLPIKLILNLLCREKFAGYLDDIKRATERSSASSSSLPFPSLPFFSAWQFSLVLFCFCSYSSLNPKDFLKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD Homology
BLAST of CmoCh10G001520 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 2.5e-72 Identity = 126/185 (68.11%), Postives = 151/185 (81.62%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 1.7e-68 Identity = 116/179 (64.80%), Postives = 144/179 (80.45%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 1.4e-59 Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.9e-59 Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.2e-53 Identity = 95/174 (54.60%), Postives = 127/174 (72.99%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy TrEMBL
Match: A0A6J1JLG7 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111485663 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 2.0e-104 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy TrEMBL
Match: A0A6J1E4K3 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111429864 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 2.0e-104 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy TrEMBL
Match: A0A0A0LNY7 (Pollen-specific protein SF3 OS=Cucumis sativus OX=3659 GN=Csa_1G005660 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 4.9e-103 Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy TrEMBL
Match: A0A1S3BVF2 (LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC103493931 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 1.1e-102 Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of CmoCh10G001520 vs. ExPASy TrEMBL
Match: A0A6J1BZ78 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111006836 PE=4 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 8.6e-100 Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 0
BLAST of CmoCh10G001520 vs. NCBI nr
Match: KAG7023149.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 471.1 bits (1211), Expect = 6.3e-129 Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
BLAST of CmoCh10G001520 vs. NCBI nr
Match: XP_022921693.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_022988414.1 LIM domain-containing protein WLIM1-like [Cucurbita maxima] >XP_023516337.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 388.7 bits (997), Expect = 4.1e-104 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
BLAST of CmoCh10G001520 vs. NCBI nr
Match: XP_038878600.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida]) HSP 1 Score: 388.3 bits (996), Expect = 5.3e-104 Identity = 182/186 (97.85%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of CmoCh10G001520 vs. NCBI nr
Match: XP_004138126.1 (LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN63605.1 hypothetical protein Csa_013738 [Cucumis sativus]) HSP 1 Score: 384.0 bits (985), Expect = 1.0e-102 Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of CmoCh10G001520 vs. NCBI nr
Match: XP_008453121.1 (PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis melo]) HSP 1 Score: 382.9 bits (982), Expect = 2.2e-102 Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of CmoCh10G001520 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 273.5 bits (698), Expect = 1.8e-73 Identity = 126/185 (68.11%), Postives = 151/185 (81.62%), Query Frame = 0
BLAST of CmoCh10G001520 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 231.1 bits (588), Expect = 1.0e-60 Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0
BLAST of CmoCh10G001520 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 231.1 bits (588), Expect = 1.0e-60 Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0
BLAST of CmoCh10G001520 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 231.1 bits (588), Expect = 1.0e-60 Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0
BLAST of CmoCh10G001520 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 231.1 bits (588), Expect = 1.0e-60 Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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