Homology
BLAST of CmoCh10G001440 vs. ExPASy Swiss-Prot
Match:
O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)
HSP 1 Score: 1387.9 bits (3591), Expect = 0.0e+00
Identity = 691/1121 (61.64%), Postives = 864/1121 (77.07%), Query Frame = 0
Query: 6 RSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKS 65
RST+++SNVP++ VA++LL FL+ LG D+VFA+EI T R NWK R RVQFTTLE KS
Sbjct: 9 RSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKS 68
Query: 66 KAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGF-MLKEDHMSVLES 125
+AQ LS Q+ L+F THNLR SE DDII RP+ R R ++ VL VGF E LE
Sbjct: 69 RAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEK 128
Query: 126 WEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCL-GD-EKLNALLLKLKYA 185
W+GV+ WI+ E+RRVEFW+W +CYK+EV FE+I+ET C+ GD +++A LLKLKY
Sbjct: 129 WDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYG 188
Query: 186 PRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQA 245
P+++K+++ ++A KF S RYR CKE+ D++WIRTT+FS +SIG ST FC EV
Sbjct: 189 PKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 248
Query: 246 SDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVS-NLAYEVQYQLNSLVHMQK 305
D+FS P YRE +T DG F S ++ VPL+ + ++ YE+ +QLN+LVH QK
Sbjct: 249 LDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQK 308
Query: 306 ISLAAASN-DLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 365
ISL AAS+ +LI L + +TAL IL++LHQ ICYDP+ F+KTQ+ + + K P+
Sbjct: 309 ISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPA 368
Query: 366 LSQKRLS-NNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSK 425
+ KRL+ N+M+C R VTPS+IY LGPELET+NYVVKNFA + SDFMRVTFVEEDWSK
Sbjct: 369 SAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSK 428
Query: 426 LPAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMF 485
LPA A++ + + G KP RT IY+R++SIL GI +G KRFEFLAFSASQLR NSVWMF
Sbjct: 429 LPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMF 488
Query: 486 ASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSD 545
AS+ +KAE+IR+WMGCF KIRSISKCAARMGQLFS+S QTL+V QDVE IPDIEV +D
Sbjct: 489 ASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD 548
Query: 546 GIDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDS 605
G DYCFSDGIGKISL+FA+QVA KCGL+H+PSAFQIRYGGYKGVIAVDR+SFRKLSLRDS
Sbjct: 549 GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 608
Query: 606 MLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDK 665
MLKF+S N+MLNVT+ ++SMPC+LNREI+ LLSTLG++D FEA+Q L +L ML D+
Sbjct: 609 MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 668
Query: 666 VAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPK 725
AALNVL+ L+G +S N+LV+ML GY P+ EPYLSMML+ H+ + S+L+SRCRI VPK
Sbjct: 669 DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 728
Query: 726 GRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCL 785
GRIL+GC+DE GIL YGQVY +TLTK+EL+ R+Q+YF KIDE S+++GKVVVTKNPCL
Sbjct: 729 GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 788
Query: 786 HPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPP 845
HPGD+RVL+AI+ V EEKG +DC+IFPQKGERPH NECSGGDLDGD +F+SWDE +IP
Sbjct: 789 HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 848
Query: 846 KTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSK 905
+ + PMDY G RPR+MDHDVTLEEI KFFVDYMI+DTLG ISTAHLVHADR+P+KA S K
Sbjct: 849 EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 908
Query: 906 CLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKT 965
CLELA LHS AVD+AKTGAPAEMP LKPREFPDF+ERF+KP Y S +V GKLYRA +
Sbjct: 909 CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSS 968
Query: 966 MEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDE 1025
+ Q + E T YD LE GFE+F+ETA++ + MY EK++ LM YYGA E+E
Sbjct: 969 LAQRKPE---AESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEE 1028
Query: 1026 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEH-KMMASAWY 1085
IL G L+++ YL RDNR+YGDMKDRI LSVK + KEA WFE SC + K +ASAWY
Sbjct: 1029 ILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWY 1088
Query: 1086 HVTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEK 1120
+VTY+P++ + + + SFPWIV DVLL+IKA N++R+ E+
Sbjct: 1089 YVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVEE 1125
BLAST of CmoCh10G001440 vs. ExPASy Swiss-Prot
Match:
Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)
HSP 1 Score: 1104.0 bits (2854), Expect = 0.0e+00
Identity = 578/1121 (51.56%), Postives = 772/1121 (68.87%), Query Frame = 0
Query: 7 STLRVSNVPESAVAEDLLTFLKSKLG-PDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKS 66
++LRVSN+P SAVA +LL F S + FA EI + W SRG G VQF + A +
Sbjct: 10 ASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAA 69
Query: 67 KAQSLSVQNNLV-FSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMSVLES 126
A L+ L F L S + D++ R R L VG + E ++
Sbjct: 70 AAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADA 129
Query: 127 WEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPR 186
W+GV+A ++P +RRV+ ++ + + YKLEV+FE++ + G L + + A+LL+L YAPR
Sbjct: 130 WDGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTL--DGMGAILLQLNYAPR 189
Query: 187 IYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQASD 246
I+ ISG + +F R+ CKE+ + W+R +F+ S G+ ++ ++ + SD
Sbjct: 190 IHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSD 249
Query: 247 MFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQKISL 306
+ S P + ++T+ G++S VPL+ ++ YEV ++LNSL+HM KI
Sbjct: 250 ILKSLP-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVA 309
Query: 307 AAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS-LSQ 366
+ DL L L D + I +++H+L+ CY PL F++ + + +KR+ VL S +
Sbjct: 310 KHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGE 369
Query: 367 KRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAG 426
+M CYRV +TPS+I+C GPE E +NYVVK+ ++YASDF+RVTFV+EDWSKL +
Sbjct: 370 GEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSN 429
Query: 427 AVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSN 486
A++ I++G SKP++T +Y+RI+SIL+ G IG K FEFLAFSASQLR NSVWMFAS+
Sbjct: 430 AISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNA 489
Query: 487 NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDY 546
+L A IR+WMG FE IRS+SKCAARMGQLFSSS QT V DVE+IPDIE+ +DG Y
Sbjct: 490 SLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKY 549
Query: 547 CFSDGIGKISLSFARQVADKCGL--THIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSML 606
FSDGIGKISL FA++VA GL T++PSAFQIRYGGYKGVIA+D S LSLR SM
Sbjct: 550 IFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMK 609
Query: 607 KFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVA 666
KFES+++MLN+T S S PCY+NREI++LLSTLG++DE F A+QQ+++ MLT+K
Sbjct: 610 KFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEV 669
Query: 667 ALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGR 726
AL+VL L G+++ V+ML GYEP+ EPYLSM+L+AH N +D+R+RC+I VPKGR
Sbjct: 670 ALSVLGKLGGSETKT-AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGR 729
Query: 727 ILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLHP 786
+L+GCLDETG+L YGQVY IT E +D NQ+YF+ D + ++GKV +TKNPCLHP
Sbjct: 730 VLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHP 789
Query: 787 GDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPKT 846
GD+RVLEAI+ +L G+VDCL+FPQ+GERPH NECSGGDLDGDLYFI+WD+ LIP K
Sbjct: 790 GDIRVLEAIYDPDL--VGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKV 849
Query: 847 EAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCL 906
+ PMDYT RPRIMDH VTLEEIQK FVDYMIND+LGAISTAHL+HADR P KA S +CL
Sbjct: 850 DTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECL 909
Query: 907 ELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTME 966
+LA LHSMAVD+AKTGAPAEMPR L+PRE+PDFMER++KPMY SN VLGKLYR+A+ ME
Sbjct: 910 QLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHME 969
Query: 967 Q--ERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDE 1026
+ + L + + YD DLEV G + FL+ AE + +Y EK++ LMNYY AE EDE
Sbjct: 970 KSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDE 1029
Query: 1027 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYH 1086
IL G++R++ YL+RDN++Y +MKDRI+ +V + +EA+ W +S + MASAWY
Sbjct: 1030 ILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYR 1089
Query: 1087 VTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKN 1121
VTYHP + F+ SFPWI D LL IKA + RR +K+
Sbjct: 1090 VTYHPDRRRGKRFW-SFPWIACDNLLAIKASSQLRRRRQKD 1123
BLAST of CmoCh10G001440 vs. ExPASy Swiss-Prot
Match:
Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 757.7 bits (1955), Expect = 1.9e-217
Identity = 457/1131 (40.41%), Postives = 657/1131 (58.09%), Query Frame = 0
Query: 8 TLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKSKA 67
T++V P AE++ FL+ G +V+AI++ + K R VQFT+ E ++
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKV-RQPKKGGPRVYAIVQFTS-ERHTRL 63
Query: 68 QSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMSVLESWEG 127
+ L + L+ E DI+ +P + + G + L S +
Sbjct: 64 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 123
Query: 128 VKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPRIYK 187
V R++ F + Y+LE+ +E I + + L++++ AP+I++
Sbjct: 124 VCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFE 183
Query: 188 KISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQASDMFS 247
K + + D WIRTT+F+S IGQST+FC E+ L D
Sbjct: 184 K---EDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 243
Query: 248 SFPLYRE-TPKDITLEDGGEFGSTSEA-VPLIKSGLVSNLAYEVQYQLNSLVHMQKISLA 307
+F Y E +E G + S + VP++ +L +E+ ++LN+LV +S
Sbjct: 244 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 303
Query: 308 AASNDLIDFLSTLGTDTAL--NILQRLHQLKFICYDPLSFLKTQLH--VLKRNCKVLPSL 367
A D L+ D AL + L++L L CY+P +L+ + + K + P++
Sbjct: 304 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 363
Query: 368 SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLP 427
S L + ++ YRV VTP+R+Y GPE+ SN V+++++ Y ++F+RV+FV+ED K+
Sbjct: 364 S---LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 423
Query: 428 AGAVT--TSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMF 487
+ ++ +S QR RT++Y RI S+LR+GIVIG K+FEFLAFS+SQLR NS WMF
Sbjct: 424 SMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMF 483
Query: 488 ASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSD 547
A + + A IR WMG F+ IR+++K AAR+GQ FSSS +TL V + ++E+IPD+E+ S
Sbjct: 484 APIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISL 543
Query: 548 GIDYCFSDGIGKISLSFARQVADKCGLTHI-PSAFQIRYGGYKGVIAVDRNSFRKLSLRD 607
G Y FSDGIGKIS FAR+VA KCGLT PSAFQIRYGGYKGV+AVD NS +KLSLR
Sbjct: 544 GTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 603
Query: 608 SMLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTD 667
SM KFES+N L+V S PCY+NR+++TLLSTLGV D FE Q+E + L +LT
Sbjct: 604 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTH 663
Query: 668 KVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVP 727
+ A L + ++ NIL ++ GY+P+ EP+LSMMLQ + +LR++ RIF+
Sbjct: 664 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 723
Query: 728 KGRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPC 787
GR ++GCLDET L YGQV + +R + I+ G VVV KNPC
Sbjct: 724 GGRSMMGCLDETRTLEYGQV---VVQYSDPMRPGR----------RFIITGPVVVAKNPC 783
Query: 788 LHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIP 847
LHPGDVRVL+A+ L +VDC++FPQKG RPH NECSG DLDGD+YF+ WD+ L+P
Sbjct: 784 LHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVP 843
Query: 848 PKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSS 907
P+T PMDYT +I+DHDVT+EE++++F +Y++ND+LG I+ AH AD+EP KA S
Sbjct: 844 PRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 903
Query: 908 KCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVK 967
C+ELA S AVD+ KTG A +P+ L +E+PDFME+ DKP Y+S NV+GKL+R +
Sbjct: 904 PCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKE 963
Query: 968 TMEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYED 1027
S +T + A+ YD D+EVDGFE +++ A K Y K+ LM+YYG + E
Sbjct: 964 RAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEA 1023
Query: 1028 EILMGD-LRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAW 1087
EIL G +R S+ +R + + I +V+ +RKE F S ASAW
Sbjct: 1024 EILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLSLFNASEEEENESAKASAW 1083
Query: 1088 YHVTYHPSYF-------KQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
YHVTYH SY+ +D F SF W V+D L+ IK N RR+ ++ L
Sbjct: 1084 YHVTYHSSYWGLYNEGLNRDHF-LSFAWCVYDKLVRIKKTNLGRRQRQETL 1097
BLAST of CmoCh10G001440 vs. ExPASy Swiss-Prot
Match:
Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)
HSP 1 Score: 634.8 bits (1636), Expect = 1.8e-180
Identity = 347/754 (46.02%), Postives = 478/754 (63.40%), Query Frame = 0
Query: 381 SRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAGAVTTSIQRGLLSKPYRT 440
S +Y GPE+ SN VV+NF+S +F+R++FV+ED KL A ++ G RT
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRT 66
Query: 441 EIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSNNLKAEEIRQWMGCFEKI 500
+Y R++S+L +GI IG K FEFLAFS+SQLR NS WMFAS L A +IR WMG F I
Sbjct: 67 ALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNI 126
Query: 501 RSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQV 560
R+++K AAR+GQ FSSST+TL V +VE I DI+ +G + FSDGIGKIS +FA +V
Sbjct: 127 RNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEV 186
Query: 561 ADKCGLTHI-PSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCSDSM 620
A KC L PSAFQIRYGGYKGV+AVD S KLSLR SMLKF+S N ++V S
Sbjct: 187 AMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQ 246
Query: 621 PCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVAALNVLENLNGADSNNILV 680
P +LNR+++TLLSTLGV+D FE Q+E ++ L +M+TD AA+ +E + + N +
Sbjct: 247 PGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVK 306
Query: 681 QMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVY 740
++L GY+P+ EPYLSM+LQ + +L+++ RI +PKGR ++GCLDET L YGQV+
Sbjct: 307 ELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVF 366
Query: 741 ACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKG 800
T + D + + GKVV+ KNPCLHPGD+R+L A+ L
Sbjct: 367 IRATSGVN-------------DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHH-- 426
Query: 801 LVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDV 860
+ +C++FPQ+G RPH NECSG DLDGD+YF+SWD +LIPP+ PMDYT +DHDV
Sbjct: 427 MFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDV 486
Query: 861 TLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHSMAVDYAKTGAP 920
T+EE++++F +Y++N++LG I+ AH+V AD+E KA SS C+ELA L S+AVD+ KTG P
Sbjct: 487 TIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVP 546
Query: 921 AEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTMEQERSRLVWTEETATAIYD 980
A +P L +E+PDFME+ DK Y+S V+GKLYR K + +T E A YD
Sbjct: 547 ALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYD 606
Query: 981 HDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKY 1040
D+ VDG+E ++ A + K Y K+ LM++YG + E EI+ G + A ++ K
Sbjct: 607 TDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMA----KNFTKK 666
Query: 1041 GDMKDRILLSVKCVRKEAKEWF------ENSCAPHEHKMMASAWYHVTYHPSYF------ 1100
D D I L+V+ +RKEA+ F +N + ASAWYHVTYHP ++
Sbjct: 667 SD-ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEG 726
Query: 1101 KQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
+ + SFPW +++ LL IK R+ + L
Sbjct: 727 YERPHFISFPWCIYEKLLRIKQRRKFVRKMQPEL 732
BLAST of CmoCh10G001440 vs. ExPASy Swiss-Prot
Match:
Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)
HSP 1 Score: 547.4 bits (1409), Expect = 3.9e-154
Identity = 386/1122 (34.40%), Postives = 579/1122 (51.60%), Query Frame = 0
Query: 56 VQFTTLEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRT------ENGVLH 115
V F E+ +A + Q NL+ L+ S + ++ R RT L
Sbjct: 81 VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKN--PYSLNQRRRTTVPYKLAGITLE 140
Query: 116 VGFMLKEDHMSVLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMF---EEILETTGYC 175
+G ++ D V EGV + P +F C++ F + ++ C
Sbjct: 141 IGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKF-------CFRKSTAFSFKDAVMHAVINC 200
Query: 176 LGDEKLNALLLKLKYAPRIYKKISGSNMAYKFSSSR---YRLCKE-----------EHDY 235
D KL L+ ++ R YK + G + + +SS YR + + D
Sbjct: 201 --DYKLELLVRDIQ-TVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDD 260
Query: 236 LWIRTTEFSSLRSIGQSTSF----CWEVEEDLQ-ASDMFSSFPLYRET---PKDITLED- 295
WIRTT+F+ + +IG+ S+ E L+ A D F + E P I E
Sbjct: 261 PWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPC 320
Query: 296 GGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQKISLAAASNDLIDFLSTLGTDTA 355
GE S K G +++E+ + +NS++H + + D L D
Sbjct: 321 FGEPVSDHFFCIHHKEG----ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVN 380
Query: 356 LNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPSLSQKRLSNNVMNCYRVLVTPSRI 415
+ L+ L K +D LK +++N K+L S Q S ++ R+++TP+R
Sbjct: 381 IASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQ---SEDISEIRRLVITPTRA 440
Query: 416 YCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAGAVT---TSIQRGLLSKPY-- 475
YCL PE+E SN V++ + + A F+RVTF++E + + ++ I + L S +
Sbjct: 441 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 500
Query: 476 RTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSNNLKAEEIRQWMGCFE 535
+T ++ R+ SIL +G + +++ FLAFSA+QLR S W FA + +I+ WMG F
Sbjct: 501 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF- 560
Query: 536 KIRSISKCAARMGQLFSSSTQTLVVPTQDVEI-IPDIEVNSDGIDYCFSDGIGKISLSFA 595
K ++++KCAARMG FSS+ T+ V +V+ +PDIE N Y FSDGIG I+ A
Sbjct: 561 KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLA 620
Query: 596 RQVADKCGLT--HIPSAFQIRYGGYKGVIA--VDRNSFRKLSLRDSMLKFESKNKMLNVT 655
+V +K L + P A+QIRY G+KGV+A ++ +L+LRDSM KF SK+ +L +
Sbjct: 621 DEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEIC 680
Query: 656 KCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVAALNVLENLNGAD 715
+ P +LNR+I+TLLS LGV DE F +Q+ L+ L R+L D A VL + A+
Sbjct: 681 SWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL-TASCAE 740
Query: 716 SNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGIL 775
N ML+ G++P EP+L ML + LR + RIFV GR L+GCLDE GIL
Sbjct: 741 QGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGIL 800
Query: 776 NYGQVYACITLTKSELRDRNQNYFHKIDETKS---ILLGKVVVTKNPCLHPGDVRVLEAI 835
+GQ + I ++K + + + + ETK+ ++ G V + KNPCLHPGDVR+LEA+
Sbjct: 801 EHGQCF--IQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAV 860
Query: 836 FHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPP--KTEAPMDYT 895
+L + DCLIFPQKG+RPHTNE SG DLDGDLYF++WD+ LIPP K+ M Y
Sbjct: 861 DVPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYD 920
Query: 896 GRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHS 955
+ + V ++I FF + N+ LG I AH+VHADR A+ +CL LA L +
Sbjct: 921 AAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAA 980
Query: 956 MAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTMEQERSRLV 1015
AVD+ KTG MP LKP+ +PDFM + D YKSN +LG+LYR + +++
Sbjct: 981 TAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASS 1040
Query: 1016 WTEETATAI-YDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEILMGDLRS 1075
+AI YD LE+ GFE + A K +Y ++ L+ Y + E+EI+ G + S
Sbjct: 1041 EESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWS 1100
Query: 1076 RASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHE----------HKMMASAW 1109
Y ++K G++K+R+ S ++KE ++ FE + HE ++ ASAW
Sbjct: 1101 MPKY---TSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAW 1160
BLAST of CmoCh10G001440 vs. ExPASy TrEMBL
Match:
A0A6J1E171 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111429858 PE=3 SV=1)
HSP 1 Score: 2254.2 bits (5840), Expect = 0.0e+00
Identity = 1121/1121 (100.00%), Postives = 1121/1121 (100.00%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS
Sbjct: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ
Sbjct: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS
Sbjct: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV
Sbjct: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM
Sbjct: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL
Sbjct: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
BLAST of CmoCh10G001440 vs. ExPASy TrEMBL
Match:
A0A6J1JJ96 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111485606 PE=3 SV=1)
HSP 1 Score: 2224.9 bits (5764), Expect = 0.0e+00
Identity = 1104/1121 (98.48%), Postives = 1116/1121 (99.55%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
M QPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MAQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
L AKSKAQSLSVQNNLVF+THNLRFSETNDDIIVRPIH RNRTENGVLHVGFMLKEDHMS
Sbjct: 61 LGAKSKAQSLSVQNNLVFNTHNLRFSETNDDIIVRPIHARNRTENGVLHVGFMLKEDHMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMA KFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMASKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASD+FSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ
Sbjct: 241 QASDIFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAA+NDLI+FLSTLGTDTALNILQRLHQLK ICYDPLSFLKTQLHVLKRNCKVLPS
Sbjct: 301 KISLAAANNDLIEFLSTLGTDTALNILQRLHQLKLICYDPLSFLKTQLHVLKRNCKVLPS 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKF+SKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESF+ALQQEQLHLLRRMLTDKV
Sbjct: 601 LKFKSKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFKALQQEQLHLLRRMLTDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGIL+YGQVYACITL+KSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILDYGQVYACITLSKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENL+PPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLVPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM
Sbjct: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVKC+RKEAKEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCIRKEAKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
TYHPSYFK+DMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL
Sbjct: 1081 TYHPSYFKRDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
BLAST of CmoCh10G001440 vs. ExPASy TrEMBL
Match:
A0A1S3BVE2 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493922 PE=3 SV=1)
HSP 1 Score: 2070.8 bits (5364), Expect = 0.0e+00
Identity = 1019/1117 (91.23%), Postives = 1064/1117 (95.26%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
M QPERSTLRVSNVPESA+A+DLL FL SKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAK+KA +LSVQNNLVF T NLRFS NDDI+VRP+H NRTENGVLHVGFMLKE+ MS
Sbjct: 61 LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRR+EFWIW E ECYKLEVMFEEILETTGYCLG+EKLNALL KLK
Sbjct: 121 VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMA KFSS+RYRLC E++DYLW+RTTEFS +RS+GQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASD+FS FP Y+ET KDI LEDG EF STSE VPLIKSGL SNLAYEV+YQLNSLVHMQ
Sbjct: 241 QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAA+ DLIDFL TL DTALN+LQRLHQLKFICYDPLSFLKTQLHV KRNCK LP
Sbjct: 301 KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNF+SYASDFMRVTFVEEDWSKL
Sbjct: 361 SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRG+LSKPYRT IYHRIV+ILR+GIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCG+ HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTKC DSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLL+RMLTDK
Sbjct: 601 LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
ALNVLENL+GADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSEL++RNQNYFH IDETKSIL+GKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALS+KC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVD+AKTGAPAEMPRVLKPREFPDFMERFDKPMY S+NVLGKLYRAA+K++
Sbjct: 901 LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVW+EE A AIYDHDLEVDGFEAFLE AE++K MYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVK +RKE KEWFENSC PH+ +MMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREA 1118
TYHPSYFK+DMFYFSFPW V DVLLNIKA NSKR +A
Sbjct: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1117
BLAST of CmoCh10G001440 vs. ExPASy TrEMBL
Match:
E9NWK9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G005580 PE=2 SV=1)
HSP 1 Score: 2053.1 bits (5318), Expect = 0.0e+00
Identity = 1011/1117 (90.51%), Postives = 1061/1117 (94.99%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
M QPERSTLRVSNVPESA+A+DLL FL SKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAK+KA SLSVQN+LVF T NLRFS NDDI+VRP+H NRTENGVLHVGFMLKE+ MS
Sbjct: 61 LEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRR+EFWIW E ECYKLEVMFEEILETTG+CLG+EKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMA +FSS+RYRLC E++DYLW+RTTEFS +RS+GQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASD+FS FP Y+ET KDI LEDG EF STSE VPLIKSGL SNLAYEV+YQLNSLVHMQ
Sbjct: 241 QASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISL+AA+ DLIDFL TL DTALN+LQRLHQLKF+CYDPLSFLKTQLHV KRNCK LP
Sbjct: 301 KISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPP 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNF+SYASDFMRVTFVEEDWSKL
Sbjct: 361 SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRG+LSKPYRTEIYHRI+++LR+GIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT+DVEIIPDIEVN+DG
Sbjct: 481 SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCG+ HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTKC DSMPCYLNREI TLLSTLGVKDESFEALQQEQLHLL+RMLTDK
Sbjct: 601 LKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKD 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
ALNVLEN +GADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 VALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSEL+ RNQNYFH IDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDV LEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALS+KC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVD+AKTGAPAEMPRVLKPREFPDFMERFDKPMY S+NVLGKLYRAAVK++
Sbjct: 901 LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSI 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVW+EE A AIYD+DLEVDGFEAFLE AE++K MYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVK +RKE KEWFENSC P +MMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREA 1118
TYHPSYFK+DMFYFSFPW V DVLLNIKAMNSKR +A
Sbjct: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKAMNSKRHQA 1117
BLAST of CmoCh10G001440 vs. ExPASy TrEMBL
Match:
A0A5D3BHS8 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001880 PE=3 SV=1)
HSP 1 Score: 2035.8 bits (5273), Expect = 0.0e+00
Identity = 1011/1132 (89.31%), Postives = 1056/1132 (93.29%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
M QPERSTLRVSNVPESA+A+DLL FL SKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAK+KA +LSVQNNLVF T NLRFS NDDI+VRP+H NRTENGVLHVGFMLKE+ MS
Sbjct: 61 LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYC---------LGDEK 180
VLESWEGVKAWIMPERRR+EFWIW E ECYKLEVMFEEILETTGY G +
Sbjct: 121 VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYSGMVPCFTSGFGSKD 180
Query: 181 ------LNALLLKLKYAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRS 240
L L LKYAPRIYKKISGSNMA KFSS+RYRLC E++DYLW+RTTEFS +RS
Sbjct: 181 FFVTLYLVGNLSPLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240
Query: 241 IGQSTSFCWEVEEDLQASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNL 300
+GQSTSFCWEVEEDLQASD+FS FP Y+ET KDI LEDG EF STSE VPLIKSGL SNL
Sbjct: 241 VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300
Query: 301 AYEVQYQLNSLVHMQKISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLK 360
AYEV+YQLNSLVHMQKISLAAA+ DLIDFL TL DTALN+LQRLHQLKFICYDPLSFLK
Sbjct: 301 AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360
Query: 361 TQLHVLKRNCKVLPSLSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYAS 420
TQLHV KRNCK LP SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNF+SYAS
Sbjct: 361 TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420
Query: 421 DFMRVTFVEEDWSKLPAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLA 480
DFMRVTFVEEDWSKLPAGAVTTSIQRG+LSKPYRT IYHRIV+ILR+GIVIGAKRFEFLA
Sbjct: 421 DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480
Query: 481 FSASQLRSNSVWMFASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540
FSASQLRSNSVWMFASS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT
Sbjct: 481 FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540
Query: 541 QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIA 600
QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCG+ HIPSAFQIRYGGYKGVIA
Sbjct: 541 QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600
Query: 601 VDRNSFRKLSLRDSMLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQ 660
VDRNSFRKLSLRDSMLKFESKNKMLNVTKC DSMPCYLNREIVTLLSTLGVKDESFEALQ
Sbjct: 601 VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660
Query: 661 QEQLHLLRRMLTDKVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720
QEQLHLL+RMLTDK ALNVLENL+GADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL
Sbjct: 661 QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720
Query: 721 FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKS 780
FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSEL++RNQNYFH IDETKS
Sbjct: 721 FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780
Query: 781 ILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDG 840
IL+GKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDG
Sbjct: 781 ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840
Query: 841 DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900
DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL
Sbjct: 841 DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900
Query: 901 VHADREPKKALSSKCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKS 960
VHADREPKKALS+KCLELAALHSMAVD+AKTGAPAEMPRVLKPREFPDFMERFDKPMY S
Sbjct: 901 VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960
Query: 961 NNVLGKLYRAAVKTMEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKM 1020
+NVLGKLYRAA+K++EQERSRLVW+EE A AIYDHDLEVDGFEAFLE AE++K MYIEKM
Sbjct: 961 SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020
Query: 1021 SILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSC 1080
SILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVK +RKE KEWFENSC
Sbjct: 1021 SILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080
Query: 1081 APHEHKMMASAWYHVTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREA 1118
PH+ +MMASAWYHVTYHPSYFK+DMFYFSFPW V DVLLNIKA NSKR +A
Sbjct: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1132
BLAST of CmoCh10G001440 vs. NCBI nr
Match:
XP_022921679.1 (RNA-dependent RNA polymerase 2 [Cucurbita moschata])
HSP 1 Score: 2254.2 bits (5840), Expect = 0.0e+00
Identity = 1121/1121 (100.00%), Postives = 1121/1121 (100.00%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS
Sbjct: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ
Sbjct: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS
Sbjct: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV
Sbjct: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM
Sbjct: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL
Sbjct: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
BLAST of CmoCh10G001440 vs. NCBI nr
Match:
KAG6589458.1 (RNA-dependent RNA polymerase 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023142.1 RNA-dependent RNA polymerase 2 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 2241.1 bits (5806), Expect = 0.0e+00
Identity = 1115/1121 (99.46%), Postives = 1118/1121 (99.73%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIH RNRTENGVLHVGFMLKEDHMS
Sbjct: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHARNRTENGVLHVGFMLKEDHMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMA KFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMASKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASD+FSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ
Sbjct: 241 QASDIFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAASNDLI+FLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS
Sbjct: 301 KISLAAASNDLIEFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRML DKV
Sbjct: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLMDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM
Sbjct: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL
Sbjct: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
BLAST of CmoCh10G001440 vs. NCBI nr
Match:
XP_023516327.1 (RNA-dependent RNA polymerase 2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 2232.6 bits (5784), Expect = 0.0e+00
Identity = 1109/1121 (98.93%), Postives = 1117/1121 (99.64%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
MGQP+RSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MGQPKRSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LEAKSKAQSLSVQNNLVF+THNLRFSETNDDIIVRPIH RNRTENGVLHVGFMLKEDHMS
Sbjct: 61 LEAKSKAQSLSVQNNLVFNTHNLRFSETNDDIIVRPIHARNRTENGVLHVGFMLKEDHMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRRVEFWIW EDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRVEFWIWHEDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYK+ISGSNMA KFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKRISGSNMASKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASD+FSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYE+QYQLNSLVHMQ
Sbjct: 241 QASDIFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYELQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAASNDLI+FLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS
Sbjct: 301 KISLAAASNDLIEFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV
Sbjct: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM
Sbjct: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVWTEETA AIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAE+EDEI
Sbjct: 961 EQERSRLVWTEETARAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEFEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL
Sbjct: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
BLAST of CmoCh10G001440 vs. NCBI nr
Match:
XP_022988330.1 (RNA-dependent RNA polymerase 2 [Cucurbita maxima])
HSP 1 Score: 2224.9 bits (5764), Expect = 0.0e+00
Identity = 1104/1121 (98.48%), Postives = 1116/1121 (99.55%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
M QPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MAQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
L AKSKAQSLSVQNNLVF+THNLRFSETNDDIIVRPIH RNRTENGVLHVGFMLKEDHMS
Sbjct: 61 LGAKSKAQSLSVQNNLVFNTHNLRFSETNDDIIVRPIHARNRTENGVLHVGFMLKEDHMS 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK
Sbjct: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMA KFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMASKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
QASD+FSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ
Sbjct: 241 QASDIFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAA+NDLI+FLSTLGTDTALNILQRLHQLK ICYDPLSFLKTQLHVLKRNCKVLPS
Sbjct: 301 KISLAAANNDLIEFLSTLGTDTALNILQRLHQLKLICYDPLSFLKTQLHVLKRNCKVLPS 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKF+SKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESF+ALQQEQLHLLRRMLTDKV
Sbjct: 601 LKFKSKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFKALQQEQLHLLRRMLTDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGIL+YGQVYACITL+KSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILDYGQVYACITLSKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENL+PPK
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLVPPK 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM
Sbjct: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLSVKC+RKEAKEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCIRKEAKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
TYHPSYFK+DMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL
Sbjct: 1081 TYHPSYFKRDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
BLAST of CmoCh10G001440 vs. NCBI nr
Match:
XP_038878920.1 (RNA-dependent RNA polymerase 2 [Benincasa hispida])
HSP 1 Score: 2082.8 bits (5395), Expect = 0.0e+00
Identity = 1025/1117 (91.76%), Postives = 1073/1117 (96.06%), Query Frame = 0
Query: 1 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
M QPERSTL+VSNVPESA+A+DL TFL SKLGPDS+FAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1 MAQPERSTLKVSNVPESAIAQDLWTFLSSKLGPDSIFAIEIFTERKNWKSRGSGRVQFTT 60
Query: 61 LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120
LE KSKAQSLSVQNNLVF++HNLRFSE NDDI+VRP+H RNR ENGVLHVGFMLKED M
Sbjct: 61 LETKSKAQSLSVQNNLVFNSHNLRFSEINDDIVVRPVHARNRAENGVLHVGFMLKEDRMC 120
Query: 121 VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180
VLESW+GVKAWIMPERRRVEFWIW E ECYKLEVMFEEILETTG+CLG EKLNALLLKLK
Sbjct: 121 VLESWDGVKAWIMPERRRVEFWIWHEKECYKLEVMFEEILETTGFCLGHEKLNALLLKLK 180
Query: 181 YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240
YAPRIYKKISGSNMA +FSS+RYRLC+E++DYLW+RTTEFS++RS+GQSTSFCWEVEEDL
Sbjct: 181 YAPRIYKKISGSNMASRFSSTRYRLCREDYDYLWVRTTEFSAMRSVGQSTSFCWEVEEDL 240
Query: 241 QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300
AS++F SFP YRET KDI LEDG EFG++SE VPLIK GL SNL YEVQYQLNSLVHMQ
Sbjct: 241 LASNIFLSFPFYRETQKDIVLEDGEEFGTSSEIVPLIKFGLGSNLVYEVQYQLNSLVHMQ 300
Query: 301 KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360
KISLAAA++DLI+FLSTL DTALN+LQRLHQLKFICYDPLSFLKTQLHVLKRNCK L
Sbjct: 301 KISLAAANDDLINFLSTLDVDTALNVLQRLHQLKFICYDPLSFLKTQLHVLKRNCKNLSL 360
Query: 361 LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL
Sbjct: 361 SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420
Query: 421 PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
PAGAVTTSIQRG+LSKPYRTEIYHRI++ILR+GIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421 PAGAVTTSIQRGILSKPYRTEIYHRIMNILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
Query: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481 SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
Query: 541 IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
IDYCFSDGIGKISLSFARQVADKCG+ HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541 IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
Query: 601 LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660
LKFESKNKMLNVTK SDSMPCYLNREIVTLLSTLGV+DESFEALQQEQLHLL RMLTDKV
Sbjct: 601 LKFESKNKMLNVTKWSDSMPCYLNREIVTLLSTLGVQDESFEALQQEQLHLLGRMLTDKV 660
Query: 661 AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
ALNVLENL+GADSNNILVQMLNHGYEPNIEPYLSMM+QAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661 VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMIQAHYWNLFSDLRSRCRIFVPKG 720
Query: 721 RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780
RILLGCLDETGILNYGQVYACITLTKSEL+DRNQ YFHKIDETKSILLGKVVVTKNPCLH
Sbjct: 721 RILLGCLDETGILNYGQVYACITLTKSELQDRNQKYFHKIDETKSILLGKVVVTKNPCLH 780
Query: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840
PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPP+
Sbjct: 781 PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPR 840
Query: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC
Sbjct: 841 TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900
Query: 901 LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960
LELAALHSMAVD+AKTGAPAEMPRVLKPREFPDFMERFDKPMY SNNVLGKLYRAAVK++
Sbjct: 901 LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISNNVLGKLYRAAVKSI 960
Query: 961 EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020
EQERSRLVW+EE A A+YDHDLEVDGFEAFLE AES+K +YIEKMSILMNYYGAEYEDEI
Sbjct: 961 EQERSRLVWSEEAARAVYDHDLEVDGFEAFLEMAESYKDLYIEKMSILMNYYGAEYEDEI 1020
Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080
LMGDLRSRASYLQRDNRKYGDMKDRILLS+K +RKE KEWFENSCAPHEHKMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSMKNLRKEVKEWFENSCAPHEHKMMASAWYHV 1080
Query: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREA 1118
TYHPSYFK+DMFYFSFPW V DVLLNIKAMNSKR +A
Sbjct: 1081 TYHPSYFKEDMFYFSFPWTVSDVLLNIKAMNSKRHQA 1117
BLAST of CmoCh10G001440 vs. TAIR 10
Match:
AT4G11130.1 (RNA-dependent RNA polymerase 2 )
HSP 1 Score: 1387.9 bits (3591), Expect = 0.0e+00
Identity = 691/1121 (61.64%), Postives = 864/1121 (77.07%), Query Frame = 0
Query: 6 RSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKS 65
RST+++SNVP++ VA++LL FL+ LG D+VFA+EI T R NWK R RVQFTTLE KS
Sbjct: 9 RSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKS 68
Query: 66 KAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGF-MLKEDHMSVLES 125
+AQ LS Q+ L+F THNLR SE DDII RP+ R R ++ VL VGF E LE
Sbjct: 69 RAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEK 128
Query: 126 WEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCL-GD-EKLNALLLKLKYA 185
W+GV+ WI+ E+RRVEFW+W +CYK+EV FE+I+ET C+ GD +++A LLKLKY
Sbjct: 129 WDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYG 188
Query: 186 PRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQA 245
P+++K+++ ++A KF S RYR CKE+ D++WIRTT+FS +SIG ST FC EV
Sbjct: 189 PKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 248
Query: 246 SDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVS-NLAYEVQYQLNSLVHMQK 305
D+FS P YRE +T DG F S ++ VPL+ + ++ YE+ +QLN+LVH QK
Sbjct: 249 LDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQK 308
Query: 306 ISLAAASN-DLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 365
ISL AAS+ +LI L + +TAL IL++LHQ ICYDP+ F+KTQ+ + + K P+
Sbjct: 309 ISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPA 368
Query: 366 LSQKRLS-NNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSK 425
+ KRL+ N+M+C R VTPS+IY LGPELET+NYVVKNFA + SDFMRVTFVEEDWSK
Sbjct: 369 SAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSK 428
Query: 426 LPAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMF 485
LPA A++ + + G KP RT IY+R++SIL GI +G KRFEFLAFSASQLR NSVWMF
Sbjct: 429 LPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMF 488
Query: 486 ASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSD 545
AS+ +KAE+IR+WMGCF KIRSISKCAARMGQLFS+S QTL+V QDVE IPDIEV +D
Sbjct: 489 ASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD 548
Query: 546 GIDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDS 605
G DYCFSDGIGKISL+FA+QVA KCGL+H+PSAFQIRYGGYKGVIAVDR+SFRKLSLRDS
Sbjct: 549 GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 608
Query: 606 MLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDK 665
MLKF+S N+MLNVT+ ++SMPC+LNREI+ LLSTLG++D FEA+Q L +L ML D+
Sbjct: 609 MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 668
Query: 666 VAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPK 725
AALNVL+ L+G +S N+LV+ML GY P+ EPYLSMML+ H+ + S+L+SRCRI VPK
Sbjct: 669 DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 728
Query: 726 GRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCL 785
GRIL+GC+DE GIL YGQVY +TLTK+EL+ R+Q+YF KIDE S+++GKVVVTKNPCL
Sbjct: 729 GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 788
Query: 786 HPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPP 845
HPGD+RVL+AI+ V EEKG +DC+IFPQKGERPH NECSGGDLDGD +F+SWDE +IP
Sbjct: 789 HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 848
Query: 846 KTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSK 905
+ + PMDY G RPR+MDHDVTLEEI KFFVDYMI+DTLG ISTAHLVHADR+P+KA S K
Sbjct: 849 EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 908
Query: 906 CLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKT 965
CLELA LHS AVD+AKTGAPAEMP LKPREFPDF+ERF+KP Y S +V GKLYRA +
Sbjct: 909 CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSS 968
Query: 966 MEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDE 1025
+ Q + E T YD LE GFE+F+ETA++ + MY EK++ LM YYGA E+E
Sbjct: 969 LAQRKPE---AESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEE 1028
Query: 1026 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEH-KMMASAWY 1085
IL G L+++ YL RDNR+YGDMKDRI LSVK + KEA WFE SC + K +ASAWY
Sbjct: 1029 ILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWY 1088
Query: 1086 HVTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEK 1120
+VTY+P++ + + + SFPWIV DVLL+IKA N++R+ E+
Sbjct: 1089 YVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVEE 1125
BLAST of CmoCh10G001440 vs. TAIR 10
Match:
AT1G14790.1 (RNA-dependent RNA polymerase 1 )
HSP 1 Score: 757.7 bits (1955), Expect = 1.3e-218
Identity = 457/1131 (40.41%), Postives = 657/1131 (58.09%), Query Frame = 0
Query: 8 TLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKSKA 67
T++V P AE++ FL+ G +V+AI++ + K R VQFT+ E ++
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKV-RQPKKGGPRVYAIVQFTS-ERHTRL 63
Query: 68 QSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMSVLESWEG 127
+ L + L+ E DI+ +P + + G + L S +
Sbjct: 64 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 123
Query: 128 VKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPRIYK 187
V R++ F + Y+LE+ +E I + + L++++ AP+I++
Sbjct: 124 VCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFE 183
Query: 188 KISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQASDMFS 247
K + + D WIRTT+F+S IGQST+FC E+ L D
Sbjct: 184 K---EDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 243
Query: 248 SFPLYRE-TPKDITLEDGGEFGSTSEA-VPLIKSGLVSNLAYEVQYQLNSLVHMQKISLA 307
+F Y E +E G + S + VP++ +L +E+ ++LN+LV +S
Sbjct: 244 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 303
Query: 308 AASNDLIDFLSTLGTDTAL--NILQRLHQLKFICYDPLSFLKTQLH--VLKRNCKVLPSL 367
A D L+ D AL + L++L L CY+P +L+ + + K + P++
Sbjct: 304 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 363
Query: 368 SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLP 427
S L + ++ YRV VTP+R+Y GPE+ SN V+++++ Y ++F+RV+FV+ED K+
Sbjct: 364 S---LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 423
Query: 428 AGAVT--TSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMF 487
+ ++ +S QR RT++Y RI S+LR+GIVIG K+FEFLAFS+SQLR NS WMF
Sbjct: 424 SMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMF 483
Query: 488 ASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSD 547
A + + A IR WMG F+ IR+++K AAR+GQ FSSS +TL V + ++E+IPD+E+ S
Sbjct: 484 APIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISL 543
Query: 548 GIDYCFSDGIGKISLSFARQVADKCGLTHI-PSAFQIRYGGYKGVIAVDRNSFRKLSLRD 607
G Y FSDGIGKIS FAR+VA KCGLT PSAFQIRYGGYKGV+AVD NS +KLSLR
Sbjct: 544 GTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 603
Query: 608 SMLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTD 667
SM KFES+N L+V S PCY+NR+++TLLSTLGV D FE Q+E + L +LT
Sbjct: 604 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTH 663
Query: 668 KVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVP 727
+ A L + ++ NIL ++ GY+P+ EP+LSMMLQ + +LR++ RIF+
Sbjct: 664 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 723
Query: 728 KGRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPC 787
GR ++GCLDET L YGQV + +R + I+ G VVV KNPC
Sbjct: 724 GGRSMMGCLDETRTLEYGQV---VVQYSDPMRPGR----------RFIITGPVVVAKNPC 783
Query: 788 LHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIP 847
LHPGDVRVL+A+ L +VDC++FPQKG RPH NECSG DLDGD+YF+ WD+ L+P
Sbjct: 784 LHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVP 843
Query: 848 PKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSS 907
P+T PMDYT +I+DHDVT+EE++++F +Y++ND+LG I+ AH AD+EP KA S
Sbjct: 844 PRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 903
Query: 908 KCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVK 967
C+ELA S AVD+ KTG A +P+ L +E+PDFME+ DKP Y+S NV+GKL+R +
Sbjct: 904 PCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKE 963
Query: 968 TMEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYED 1027
S +T + A+ YD D+EVDGFE +++ A K Y K+ LM+YYG + E
Sbjct: 964 RAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEA 1023
Query: 1028 EILMGD-LRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAW 1087
EIL G +R S+ +R + + I +V+ +RKE F S ASAW
Sbjct: 1024 EILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLSLFNASEEEENESAKASAW 1083
Query: 1088 YHVTYHPSYF-------KQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1122
YHVTYH SY+ +D F SF W V+D L+ IK N RR+ ++ L
Sbjct: 1084 YHVTYHSSYWGLYNEGLNRDHF-LSFAWCVYDKLVRIKKTNLGRRQRQETL 1097
BLAST of CmoCh10G001440 vs. TAIR 10
Match:
AT3G49500.1 (RNA-dependent RNA polymerase 6 )
HSP 1 Score: 547.4 bits (1409), Expect = 2.8e-155
Identity = 386/1122 (34.40%), Postives = 579/1122 (51.60%), Query Frame = 0
Query: 56 VQFTTLEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRT------ENGVLH 115
V F E+ +A + Q NL+ L+ S + ++ R RT L
Sbjct: 81 VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKN--PYSLNQRRRTTVPYKLAGITLE 140
Query: 116 VGFMLKEDHMSVLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMF---EEILETTGYC 175
+G ++ D V EGV + P +F C++ F + ++ C
Sbjct: 141 IGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKF-------CFRKSTAFSFKDAVMHAVINC 200
Query: 176 LGDEKLNALLLKLKYAPRIYKKISGSNMAYKFSSSR---YRLCKE-----------EHDY 235
D KL L+ ++ R YK + G + + +SS YR + + D
Sbjct: 201 --DYKLELLVRDIQ-TVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDD 260
Query: 236 LWIRTTEFSSLRSIGQSTSF----CWEVEEDLQ-ASDMFSSFPLYRET---PKDITLED- 295
WIRTT+F+ + +IG+ S+ E L+ A D F + E P I E
Sbjct: 261 PWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPC 320
Query: 296 GGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQKISLAAASNDLIDFLSTLGTDTA 355
GE S K G +++E+ + +NS++H + + D L D
Sbjct: 321 FGEPVSDHFFCIHHKEG----ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVN 380
Query: 356 LNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPSLSQKRLSNNVMNCYRVLVTPSRI 415
+ L+ L K +D LK +++N K+L S Q S ++ R+++TP+R
Sbjct: 381 IASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQ---SEDISEIRRLVITPTRA 440
Query: 416 YCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAGAVT---TSIQRGLLSKPY-- 475
YCL PE+E SN V++ + + A F+RVTF++E + + ++ I + L S +
Sbjct: 441 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 500
Query: 476 RTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSNNLKAEEIRQWMGCFE 535
+T ++ R+ SIL +G + +++ FLAFSA+QLR S W FA + +I+ WMG F
Sbjct: 501 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF- 560
Query: 536 KIRSISKCAARMGQLFSSSTQTLVVPTQDVEI-IPDIEVNSDGIDYCFSDGIGKISLSFA 595
K ++++KCAARMG FSS+ T+ V +V+ +PDIE N Y FSDGIG I+ A
Sbjct: 561 KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLA 620
Query: 596 RQVADKCGLT--HIPSAFQIRYGGYKGVIA--VDRNSFRKLSLRDSMLKFESKNKMLNVT 655
+V +K L + P A+QIRY G+KGV+A ++ +L+LRDSM KF SK+ +L +
Sbjct: 621 DEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEIC 680
Query: 656 KCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVAALNVLENLNGAD 715
+ P +LNR+I+TLLS LGV DE F +Q+ L+ L R+L D A VL + A+
Sbjct: 681 SWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL-TASCAE 740
Query: 716 SNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGIL 775
N ML+ G++P EP+L ML + LR + RIFV GR L+GCLDE GIL
Sbjct: 741 QGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGIL 800
Query: 776 NYGQVYACITLTKSELRDRNQNYFHKIDETKS---ILLGKVVVTKNPCLHPGDVRVLEAI 835
+GQ + I ++K + + + + ETK+ ++ G V + KNPCLHPGDVR+LEA+
Sbjct: 801 EHGQCF--IQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAV 860
Query: 836 FHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPP--KTEAPMDYT 895
+L + DCLIFPQKG+RPHTNE SG DLDGDLYF++WD+ LIPP K+ M Y
Sbjct: 861 DVPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYD 920
Query: 896 GRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHS 955
+ + V ++I FF + N+ LG I AH+VHADR A+ +CL LA L +
Sbjct: 921 AAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAA 980
Query: 956 MAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTMEQERSRLV 1015
AVD+ KTG MP LKP+ +PDFM + D YKSN +LG+LYR + +++
Sbjct: 981 TAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASS 1040
Query: 1016 WTEETATAI-YDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEILMGDLRS 1075
+AI YD LE+ GFE + A K +Y ++ L+ Y + E+EI+ G + S
Sbjct: 1041 EESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWS 1100
Query: 1076 RASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHE----------HKMMASAW 1109
Y ++K G++K+R+ S ++KE ++ FE + HE ++ ASAW
Sbjct: 1101 MPKY---TSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAW 1160
BLAST of CmoCh10G001440 vs. TAIR 10
Match:
AT2G19930.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 133.7 bits (335), Expect = 9.5e-31
Identity = 121/418 (28.95%), Postives = 195/418 (46.65%), Query Frame = 0
Query: 573 FQIRYGGY--KGVIAVD----------RNSFRKLSLRDSMLKFESKNKMLNVTKCSDSMP 632
F++ Y GY KG ++ R S K+S S+ F + N + VT +
Sbjct: 442 FRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKR 501
Query: 633 CYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVAALNVLENLNGADSNNILVQ 692
L++ +V LLS G+ +E F + L + + +K AALN N D N Q
Sbjct: 502 TKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQN-AAQ 561
Query: 693 MLNHGY---EPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQ 752
M+ G EP+++ YLS++L+ +DL++ ++ V + L+G +D TG L +
Sbjct: 562 MILVGIPLDEPHLKNYLSILLKTEK----NDLKAG-KLPVTESYYLMGTVDPTGALKEDE 621
Query: 753 VYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEE 812
V C+ L ++ G+V+V +NP LH GD+ +L+A + LEE
Sbjct: 622 V--CVILESGQIS------------------GEVLVYRNPGLHFGDIHILKATYVKALEE 681
Query: 813 --KGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWD----ENLIPPK-----TEAPMD 872
+ FPQKG R +E +GGD DGD+YFIS + EN P + T
Sbjct: 682 YVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKS 741
Query: 873 YTGRRPRIMDHDVTLEEIQKFFV--DYMINDTLGAISTAHLVHADR---------EPKKA 932
+GR P + + EE+ + F+ + ++ +G + + L DR E K
Sbjct: 742 NSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAE 801
Query: 933 LSSKCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLY 954
+ K LEL ++ A+D K G +P LKP FP +MER K ++S ++LG ++
Sbjct: 802 MKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 831
BLAST of CmoCh10G001440 vs. TAIR 10
Match:
AT2G19910.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 120.9 bits (302), Expect = 6.4e-27
Identity = 150/624 (24.04%), Postives = 247/624 (39.58%), Query Frame = 0
Query: 425 VTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAF------------------ 484
+T + L + Y ++Y I +NGI++G +R+ F F
Sbjct: 250 LTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVK 309
Query: 485 -------SASQLRSNSVWMFASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQ 544
S + + + ++FA + E R + S+ +R L S T+
Sbjct: 310 CYFIRTDSTASIDMQNPYIFAGKS---MHEARMHFMHVNTLSSLPNYMSRF-SLILSKTK 369
Query: 545 TLVVPTQDV--EIIPDIE---------VNSDGIDYCFSDGIGKISLSFAR---------- 604
TL V + E I DI ++ +G SDG G IS AR
Sbjct: 370 TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGK 429
Query: 605 --------------QVADKCGL-THIPSAFQIRYGGY--KGVIAVDRN-SFRKLSLRDSM 664
+ CG + F+I Y GY KG ++ R + +R SM
Sbjct: 430 SMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSM 489
Query: 665 LK-FESK--------NKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHL 724
+K +E + N + VT + L+R +V LLS GV ++ F + + L
Sbjct: 490 IKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEE 549
Query: 725 LRRMLTDKVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRS 784
+ + + AA N + M+ G P EPYL L ++ +
Sbjct: 550 SKTIFYSERAAFKAAINYG---DDQYTADMILVGI-PLDEPYLKDRL-SYLLKTERNALK 609
Query: 785 RCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKV 844
R + + ++G +D TG L ++ C+ L ++ G V
Sbjct: 610 AGRFPIDESYYIMGTVDPTGELKENEI--CVILHSGQIS------------------GDV 669
Query: 845 VVTKNPCLHPGDVRVLEAIFHVELEE--KGLVDCLIFPQKGERPHTNECSGGDLDGDLYF 904
+V +NP LH GD+ VL+A + LE+ + FPQKG R +E +GGD DGD+YF
Sbjct: 670 LVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYF 729
Query: 905 ISWDENLIP---------PKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVD--YMINDTLG 954
IS + L+ ++ Y GR+P + + EE+ K F+ + D +G
Sbjct: 730 ISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIG 789
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| O82504 | 0.0e+00 | 61.64 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | [more] |
| Q7XM31 | 0.0e+00 | 51.56 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| Q9LQV2 | 1.9e-217 | 40.41 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | [more] |
| Q0DXS3 | 1.8e-180 | 46.02 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| Q9SG02 | 3.9e-154 | 34.40 | RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E171 | 0.0e+00 | 100.00 | RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111429858 PE=3 ... | [more] |
| A0A6J1JJ96 | 0.0e+00 | 98.48 | RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111485606 PE=3 SV... | [more] |
| A0A1S3BVE2 | 0.0e+00 | 91.23 | RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493922 PE=3 SV=1 | [more] |
| E9NWK9 | 0.0e+00 | 90.51 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G005580 PE=2 SV=... | [more] |
| A0A5D3BHS8 | 0.0e+00 | 89.31 | RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022921679.1 | 0.0e+00 | 100.00 | RNA-dependent RNA polymerase 2 [Cucurbita moschata] | [more] |
| KAG6589458.1 | 0.0e+00 | 99.46 | RNA-dependent RNA polymerase 2, partial [Cucurbita argyrosperma subsp. sororia] ... | [more] |
| XP_023516327.1 | 0.0e+00 | 98.93 | RNA-dependent RNA polymerase 2 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022988330.1 | 0.0e+00 | 98.48 | RNA-dependent RNA polymerase 2 [Cucurbita maxima] | [more] |
| XP_038878920.1 | 0.0e+00 | 91.76 | RNA-dependent RNA polymerase 2 [Benincasa hispida] | [more] |
