CmoCh10G001430 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCACTAGCAGTAAGCGCTCGGGGAATTCATTCGTCACTTTGGAAATCAAATTCAGTGAGTTCCTTCTCTTCCTTTTTTTATGAATCGCGTCTGTGTTCTTGATTTCAGTTTGGTAGCGCATTCCAATACGAATTATTCTCCCTTAAAATCGTTTCCATGGTTTCTCGTTACGGAACATCTTCTTCTTCTCGCCGTTCATTTTGCGTATCTTTCGATGTGCCTTTTAGGGCTCATGTTTTCCATTTTCCCCCTTTTCCGAGAGAATAACAGAGCATGAACACGCATGAAATTTCGCACTTACCTGCCATTGATGAGCAACCAGATACCTTTTGGATCTGAGGTAGGATATATTAACCAAACTGAAGTATCGCATTGCTCGACTGTACTCGGAAGCTAGATCGATGAAAGCAATTCTGATAATTCTCTCCCTTTTTTTGGTTGAAAATCTGAATAGATGCAAAGCAATAATCTAGAAAGCATTCAAAAACACATAATTGTACTGAAATTATTTCTTCAAATGCATTATAATCCTTGTGTTGAATCAAGGATGAACATCCACCGCAGTTGCATCTGGAATCGACTCTTTTCCATCTGCACATGAAAATGAGCCGTTGATTCTGGAGATCAAAGAAGAGAAGTATCTTGGAAGATGAGAAAAATATTTTTGTATCATGAAAGTGGTTGGTGGAGTGGGATTCACAATCCTAACAGCCACCAAATTGTTTCATAGTTCAAGTTCATTGTTGGTCTTTGTGATTATTACTTAATAAGGTGTTTGAATTATTATAATAAGAATGCAATGATTTGCTTGTTGAAGGTGTATTCTCCTTGCTGATTGCTTCAACCCAACACAAAGGCTCCATGGCCTTGCCAGGTGTATTCTACGGTCACAAAGTTGGTGATGCTTTCAGTAAGTCTCTCACCTTTCTTTTCTTTTCTTTTTAACCTAATTTTATTCTTATTTTTTAATTATAAATTATAAATCTTTATTAATTTTAGGATTTGTTTGTATATAACAAGTAAGATTTTCCATTCCATTTTTTTTTCTAATAATATATTTGAATTCTTAGAAATTAAAATCATTTTCGAAAATAACTTATGCAAAATGTTTAAAACAAATATACAATGCATACAACAACAAAACGTCCTGTCGCTCGAAGTAGCTAATAAGCTACCCACCAGCTGGCAAGGACGATAAGTCAGTGCGAAATGGATGACGACATGTCGGATTAAAAAGTGGGACCCATCTTGATTTAGTGATTGGGTACAACGAAGCATCGGTCCCACGATAAGTCAGTGCGAAATGGATGACGACATGTCGGATTAAAAAGTGGGACCCATCTTGATTTAGTGATTGGGTACAACGAAGCATCGGTCCCACCTTTATCCTACTTTTGGAACACCGGATTAGAATCCCCGCTTCCCTCCAAACAACCGCTCCAACGTCAGTAGATAAACTCGAATGAATGGTTACTCCCGGTGGTATTTGGGTCGGTTAGTCGCTTAAAATCCGTTTTGGTGACCGGAAGTGGCCGGTCACACAGGTCTAAGCTGGTTTCAGTTTCATTTTGATTGTGGCGCATAAAACTGCTGACAGAACCCATCGGTACAGTCCGATAATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGTGGATAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGCTGTTTCCGGTTATCGTGCTTGGAATTTCGCCGTGCGGTAGCCGTCGGGCCATCATGGTGGGAGAGGATTAGGGCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTTAACCGGAATCGGAACGGTGGTGCTGGTGCTGGTAGGCCTGGGAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGATTGGGGAATTAGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGATATATCTACCGTCGCGTAA ATGATCACTAGCAGTAAGCGCTCGGGGAATTCATTCGTCACTTTGGAAATCAAATTCAGTGTATTCTCCTTGCTGATTGCTTCAACCCAACACAAAGGCTCCATGGCCTTGCCAGGTGTATTCTACGGTCACAAAGTTGGTGATGCTTTCAGTAAAACCCATCGGTACAGTCCGATAATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGTGGATAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGCTGTTTCCGGTTATCGTGCTTGGAATTTCGCCGTGCGGTAGCCGTCGGGCCATCATGGTGGGAGAGGATTAGGGCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTTAACCGGAATCGGAACGGTGGTGCTGGTGCTGGTAGGCCTGGGAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGATTGGGGAATTAGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGATATATCTACCGTCGCGTAA ATGATCACTAGCAGTAAGCGCTCGGGGAATTCATTCGTCACTTTGGAAATCAAATTCAGTGTATTCTCCTTGCTGATTGCTTCAACCCAACACAAAGGCTCCATGGCCTTGCCAGGTGTATTCTACGGTCACAAAGTTGGTGATGCTTTCAGTAAAACCCATCGGTACAGTCCGATAATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGTGGATAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGCTGTTTCCGGTTATCGTGCTTGGAATTTCGCCGTGCGGTAGCCGTCGGGCCATCATGGTGGGAGAGGATTAGGGCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTTAACCGGAATCGGAACGGTGGTGCTGGTGCTGGTAGGCCTGGGAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGATTGGGGAATTAGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGATATATCTACCGTCGCGTAA MITSSKRSGNSFVTLEIKFSVFSLLIASTQHKGSMALPGVFYGHKVGDAFSKTHRYSPIMAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA Homology
BLAST of CmoCh10G001430 vs. ExPASy TrEMBL
Match: A0A6J1E188 (uncharacterized protein LOC111429865 OS=Cucurbita moschata OX=3662 GN=LOC111429865 PE=4 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 3.6e-94 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of CmoCh10G001430 vs. ExPASy TrEMBL
Match: A0A6J1JH52 (uncharacterized protein LOC111485666 OS=Cucurbita maxima OX=3661 GN=LOC111485666 PE=4 SV=1) HSP 1 Score: 336.3 bits (861), Expect = 1.0e-88 Identity = 161/171 (94.15%), Postives = 161/171 (94.15%), Query Frame = 0
BLAST of CmoCh10G001430 vs. ExPASy TrEMBL
Match: A0A5D3BK38 (Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001870 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 4.1e-74 Identity = 139/169 (82.25%), Postives = 143/169 (84.62%), Query Frame = 0
BLAST of CmoCh10G001430 vs. ExPASy TrEMBL
Match: A0A1S3BVG0 (uncharacterized protein LOC103493921 OS=Cucumis melo OX=3656 GN=LOC103493921 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 4.1e-74 Identity = 139/169 (82.25%), Postives = 143/169 (84.62%), Query Frame = 0
BLAST of CmoCh10G001430 vs. ExPASy TrEMBL
Match: A0A5A7UWM1 (Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001790 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 7.0e-74 Identity = 139/171 (81.29%), Postives = 143/171 (83.63%), Query Frame = 0
BLAST of CmoCh10G001430 vs. NCBI nr
Match: XP_022921694.1 (uncharacterized protein LOC111429865 [Cucurbita moschata]) HSP 1 Score: 354.4 bits (908), Expect = 7.4e-94 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of CmoCh10G001430 vs. NCBI nr
Match: KAG6589457.1 (hypothetical protein SDJN03_14880, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 338.6 bits (867), Expect = 4.2e-89 Identity = 161/167 (96.41%), Postives = 161/167 (96.41%), Query Frame = 0
BLAST of CmoCh10G001430 vs. NCBI nr
Match: XP_022988416.1 (uncharacterized protein LOC111485666 [Cucurbita maxima]) HSP 1 Score: 336.3 bits (861), Expect = 2.1e-88 Identity = 161/171 (94.15%), Postives = 161/171 (94.15%), Query Frame = 0
BLAST of CmoCh10G001430 vs. NCBI nr
Match: KAG7023141.1 (hypothetical protein SDJN02_14166, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 335.5 bits (859), Expect = 3.5e-88 Identity = 160/171 (93.57%), Postives = 160/171 (93.57%), Query Frame = 0
BLAST of CmoCh10G001430 vs. NCBI nr
Match: XP_023516338.1 (uncharacterized protein LOC111780229 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 334.3 bits (856), Expect = 7.9e-88 Identity = 159/171 (92.98%), Postives = 160/171 (93.57%), Query Frame = 0
BLAST of CmoCh10G001430 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 117.5 bits (293), Expect = 1.4e-26 Identity = 65/137 (47.45%), Postives = 80/137 (58.39%), Query Frame = 0
BLAST of CmoCh10G001430 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). ) HSP 1 Score: 115.5 bits (288), Expect = 5.4e-26 Identity = 69/135 (51.11%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CmoCh10G001430 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 112.5 bits (280), Expect = 4.5e-25 Identity = 69/172 (40.12%), Postives = 95/172 (55.23%), Query Frame = 0
BLAST of CmoCh10G001430 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein ) HSP 1 Score: 107.5 bits (267), Expect = 1.5e-23 Identity = 66/171 (38.60%), Postives = 97/171 (56.73%), Query Frame = 0
BLAST of CmoCh10G001430 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 49.3 bits (116), Expect = 4.7e-06 Identity = 34/97 (35.05%), Postives = 46/97 (47.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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