CmoCh10G001350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G001350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr10: 623478 .. 623998 (-)
RNA-Seq Expression	CmoCh10G001350
Synteny	CmoCh10G001350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAATTTTGGCCACAACACCTACAAGGAGACCCACGGGGAATGTCTATCCAATTCCAGGTTTGGTCGTTATTTCCTTATTGTTGTTCTTAGAATCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNTTCATCATAATTAATTTTAGATCTCAGTGCTTGACTATTCAGCCGCCTGGGAAGGGAGACTGGGCATGTGCTTCAAAGCAGATCTTGCAATTCCACTGGAGAATCTTCTAGGTTTACAGGTATGTTTTAACTGTTCCAATTGTTGATGGTTGTTTCTCAATTCAATTCTCTGGTTGACGGACGTTTTTCCACTAACTTGAAGAGAGCAAATCGGGCGGTAGTATTAAAAAATGAGTTGATAGTTTACATAGTTTAGTGTTAATTTGTCTTTGCTTGCTTGTTTCTTCAGGTCAGGTCATGTTTTATCGGAAAATGTCCGCACTCCATTCCCCACTAGCAGTGTAG

mRNA sequence

ATGGCTTCCAATTTTGGCCACAACACCTACAAGGAGACCCACGGGGAATGTCTATCCAATTCCAGCCGCCTGGGAAGGGAGACTGGGCATGTGCTTCAAAGCAGATCTTGCAATTCCACTGGAGAATCTTCTAGGTTTACAGGTCAGGTCATGTTTTATCGGAAAATGTCCGCACTCCATTCCCCACTAGCAGTGTAG

Coding sequence (CDS)

ATGGCTTCCAATTTTGGCCACAACACCTACAAGGAGACCCACGGGGAATGTCTATCCAATTCCAGCCGCCTGGGAAGGGAGACTGGGCATGTGCTTCAAAGCAGATCTTGCAATTCCACTGGAGAATCTTCTAGGTTTACAGGTCAGGTCATGTTTTATCGGAAAATGTCCGCACTCCATTCCCCACTAGCAGTGTAG

Protein sequence

MASNFGHNTYKETHGECLSNSSRLGRETGHVLQSRSCNSTGESSRFTGQVMFYRKMSALHSPLAV

Homology

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BLAST of CmoCh10G001350 vs. NCBI nr
Match: KAG6589451.1 (E3 ubiquitin-protein ligase SIS3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 22  SRLGRETGHVLQSRSCNSTGESSRFTGQVMFYRKMSALHSPLAV 66
           SRLGRETGHVLQSRSCNSTGESSRFTGQV+FY KMSALHSP AV
Sbjct: 365 SRLGRETGHVLQSRSCNSTGESSRFTGQVIFYLKMSALHSPPAV 408

The following BLAST results are available for this feature:

BLAST of CmoCh10G001350 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G001350 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G001350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589451.1	1.6e-12	93.18	E3 ubiquitin-protein ligase SIS3, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CmoCh10G001350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G001350.1	CmoCh10G001350.1	mRNA