CmoCh10G001310 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G001310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr10: 596147 .. 597205 (-)
RNA-Seq ExpressionCmoCh10G001310
SyntenyCmoCh10G001310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTGGAGTATGATCTGGAGGTATAGTCTCGTGAACTTTTTCCTTCTAAATTTATAGAAATAGATGAACGAATGCTATCTATAATTTCCTGAAAATGTTCATGTACTTCGTTGAATATGCAAAACAAAAATCCTGTCGTGTTTATTTATAGAATAAAGCTACAATAAATCATATTTGATAGTACATTGGAGCTTTTTTCTTCCAACCATGTTCCAGATCTAGATGGATAGTAACCGTTGATGAATCCTGTTATCTGAATCTGCTTTATTGAGTGGTCAAACCTGTGTTTTTATGTGGATTCCTTGGTTCTTTTTGTATCTGTGATTTTCCCGTTCTTAGAACCTGAAAATCCTAATAGACTCTCTGATTCTCAAGAGCTATGCCCCTTGATATTTTGATGTTCCATTCATCCGCTACAACTTAGCTCTAAAAATGTTTCATCCTTGTTGCCATGTGTAGCTTTTGCTTCGTTTGTGCTTTTTTTTTTTTGGGAAGTAGGAACCCAGCTATAACGGCATGACCAATAAAAATAGCCCATGAAATAGAGCTCAGCTAACAAAACAAAACAAAACAAAATTTCTAATAAGAGGCTCTAATTGTTTACAATCAAAGATAAGGGATCATTAGAAAATTAGATGTTAAGAAAAATATCCAAAGAGAGACATTAAAGTGAATTATACTCGAGCCTTTAATGTCCTTAAAGATTCATTTATTTTTCAAACCAAATAAACTAGATGATAGCAGTGAATGCTGGTGGACCCTAAAGGTGGCTTCCTTCAGGAAAAGGAGGGTGAAGAAGCCCATTCTCCATCATGATACGTGTTTAAAGTTAGGTTAAACCAAAATTCTCAGTAAACCTTTCCACCAGGATACCAGCCAAATCAACACAAGCAAAATATTCCAAGCAAAATGACAACTCCAAAAAATATGATAAAGATCTTTCTGATACCTGCCTAATCAACGCATCTCTGAAGGGGCTTAAAACTAGAGGTGAAGATCTCTCCCCCAGGATACCAGCCAGTAGCTTTCTTCTTCTTGAAAATGGTGACCTTTGA

mRNA sequence

ATGCGATTGGAGTATGATCTGGAGGTTAAACCAAAATTCTCAGTAAACCTTTCCACCAGGATACCAGCCAAATCAACACAAGCAAAATATTCCAAGCAAAATGACAACTCCAAAAAATATGATAAAGATCTTTCTGATACCTGCCTAATCAACGCATCTCTGAAGGGGCTTAAAACTAGAGGTGAAGATCTCTCCCCCAGGATACCAGCCAGTAGCTTTCTTCTTCTTGAAAATGGTGACCTTTGA

Coding sequence (CDS)

ATGCGATTGGAGTATGATCTGGAGGTTAAACCAAAATTCTCAGTAAACCTTTCCACCAGGATACCAGCCAAATCAACACAAGCAAAATATTCCAAGCAAAATGACAACTCCAAAAAATATGATAAAGATCTTTCTGATACCTGCCTAATCAACGCATCTCTGAAGGGGCTTAAAACTAGAGGTGAAGATCTCTCCCCCAGGATACCAGCCAGTAGCTTTCTTCTTCTTGAAAATGGTGACCTTTGA

Protein sequence

MRLEYDLEVKPKFSVNLSTRIPAKSTQAKYSKQNDNSKKYDKDLSDTCLINASLKGLKTRGEDLSPRIPASSFLLLENGDL
Homology
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BLAST of CmoCh10G001310 vs. NCBI nr
Match: KAG7023127.1 (hypothetical protein SDJN02_14152, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 9.6e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MRLEYDLEVKPKFSVNLSTRIPAKSTQAKYSKQNDNSKKYDKDLSDTCLINASLKGLKTR 60
          MRLEYDLEVKPKFSVNLSTRIPAKSTQAKYSKQNDNSKKYDKDLSDTCLINASLKGLKTR
Sbjct: 1  MRLEYDLEVKPKFSVNLSTRIPAKSTQAKYSKQNDNSKKYDKDLSDTCLINASLKGLKTR 60

Query: 61 GEDLSPRIPASSFLLLENGDL 82
          GEDLSPRIPASSFLLLENGDL
Sbjct: 61 GEDLSPRIPASSFLLLENGDL 81

The following BLAST results are available for this feature:
BLAST of CmoCh10G001310 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh10G001310 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh10G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023127.19.6e-36100.00hypothetical protein SDJN02_14152, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh10G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G001310.1CmoCh10G001310.1mRNA