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CmoCh10G000890 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCGTGGGACTAAGGGATATAGGCGCTGGATAAGCATTTGGACACTGTCCTCACTCCCGCCAAGTTCAGACTATAATCATGGAAGCTCTGGCGCTTCCTTCTATGAATTCTCTCACCATTTCCTGTTCTAATTTGCAGAAAGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCTACCTTGAAGTTCAGGCCCCTTCATGGTACCCGCCACTATGTGCGTAATTCTTTACTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTCAATTTCGGTTGTGTTTGATTCTTTTCTTGGAGATCATTAAAGAAATCTAGAAAAGATTTGAAAGATTGCTGTCTTAATGAGGTCTTATTTCCTTCCGTGATCCATTTGTTTCTATAACGTCAATGTTTATTCCAGCAGTCCAATGTTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGGTTGGTACCAACCGTTTGTTTTGTAATGGTATTGCTTTTTAGTCCTATGACTTAGAAGTTTGTTTGGTTGTAGTAACTAGAGGATCAATATTAATTGTTAGGGAAAATCTATCAATCTTGTAGCAGTCATTTGGGATTTGGGATTCAACTTAATTTTGGAAATCAACAAGTTATATGATATTTACATTGATTATTAACAAGTATGTTCATTATGTCCTGATGGTTTAGTCATACTCTCCGAAGTTGAGTTTTTCAACCGCATTGTTTCTTGATTGCATTCTTTAAGTTTCCTGAATTGTTCATTCAAAAATTTTGTTTTTGGTAGTATGATTCGTAAATGTGTGCTGTTTAATGTGAACTAATCATTTATGTCTACAGATTCGGGAGGGCAAAGTGAAAGTTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGTAGACCACTGAGGTGTTTGTGATATCATATTTGTTCGTTGTTTGACTCTCCAACTTATGTTTCTCCCATGTTTTGAAGGCATGGGTTAAAGGCTCAACATGGATCCCAATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGTACCATGAAACTCTTGCTATCTTTTCTTTAAATACCAAAGTCTAGTTCTCTGGTTGTCATTTTTGCAGCTTTCCATTCAGAGAAACAAATTACTTTTACTTAGTTTCCTTCTCATGGTTGCTAGTAAGATTAGTTAATCATACAAAGTAATGAGTATTACTGACCATGGAATGTGTGAGATCTCATATTGGTTGGAAAGGGGAACAAAGTATTCTTTATAAGGGTGTGGAAACCTTTCTCTTAGTAGACATGTTTCAAAAGTCTTGAGAGTAAGCTCGAAAGAGAAAACCTAAAGAGAATAATATTTACCGCTTACTAACGGTAGATTTGAGTTGTTATTAGGATGAGTGAAATTTTTATTCTTTATTTTTTTATCGAGCTATTTTGGCAGTTAGTTCCTTACATTGTTCTTATATTTGCCTAGGGGGTTGGTGGAGTGGTGTGCCTACGGTATCCTACAATAGGTATAACGCAGGCCATAGCAATTCTTCTACTCCTTTTTTGTTTTTTGTTAATTATTTACCTTTTTCTTTGCCTGAACTTCAACAGCCGCTTCTTGTCAGAAGTTCAAGAGAAATTTCCAAAAGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTAATCTCCTTATTCTGATTGGGCTTGGAGGAAATGTTTGTAGACAGTCGATGCAGAGTTGTACACTGAGCTTGCAACTTGGGATATAATGATTTCTTGATTTTCCATAACGGTTAATCTTGATGTGAGATCCCATGTCGGTTGAAGAGGAGAACAAAACATTCTTTATAAGAATGTAGAAACCTCTTCCTAGCAGATGTGTTTTAAAAATCATGAGGCTGACAGCAATACGTAACGGGCCAAAATCGAACAATATCTGCTAGCGGCGAACTTGGGCTGTTACAAATGGTATTAAAGCCAGACATCGAGCGGCATGTCAATGAGGACGCTGGGCACATGGTGGAAGGGGGTGGGTTGTGAATCCCGCATCGGTTGGAGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAACCTCTCCCTAATAGACACGTTTTAAAACTATGAAGTTGACCGCGATACGTAACGGCCCAAAACAGAGAATATCTATGAGTATGGACTGTTCCACGTGATCTTCTTACTTCCATGTAACTAGTGAAGGAAAATTTGCTCAGCTAACTATAGTTGCAATGAAGTATACTGAACCCAGCAATAAGCAGCAGGTTAAAGTTATGATAACACATTGGGGGATGAAAGGATCGCACACATTGTTATTTTACTTGAAATGATTGGACCATGTAATCTTCTAGGATATCTCTCATCCAGCGTTGACTAATGTTATCGTGAATGTACTAGTGTGGTATTGCTTTTCTTTGTATCAGACTTTCGCTAAAAGAATTAAACCAATGATATTGTTAATTACTTCAAAAAGATCAAATTGTAAGGAATTTATAATCTTGGCTGGGCTTCTTTCATCTGAACAACACTTTTGGAAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGTAACGATATTATTACTTCGAAGTTTCTACTTCCTCTCGCTGTTAATCCAGTCTGTAAAAGTGAAAATTTGGTGATGTCTATCATTTTACCTGGAACAGGATCTGGCCAGAGAAGGTCCTCAGCCTTTAAAATTTGCTGGGATTGGTGGGCTCTCAGAATTCCTTGGGTAACAGATGATTTCAACCTATTTTCTCCTTCTGTCTATTTTCTCCTTCAAAGGGAAAAAAGAACATATCAAATAGATTTAATTTACTCTGAAACTGCTCGTCTCTCTGTCGTCTGACTCACTTCCCCCATGACTTTCAGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGGTAATGTTTCATCTCGATGTATTAGTTAACTACTTTTCAGTTTCATCTTAAACTTCTCCCTTAAGCCTCGCGTTTAATTATCATGGCACAGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTGCGGTCTCACTAAGGTCACTTACTGGGGTGGGTTGTGTAGTAGCATGAAACACATGAGAGGCTAAGGTCTCTGAGGTTTTGGCTAGAGTAGAGAGTTCTGTGTGATGAGGATGCTTGGAATTAATTATATGTCTTGGAGAGATCTGCTGATGCTCTGTTCTATATTCTTGAGTCCAGTTCTCATTAATCGGCTGCCTACATAATCATAATGGATACAATAAAGATAAAAGGCAACAAAAACACATACAATAAAGCCCCCAACATTCTAACAAGGAGTTGCCGTCGCTACAAGAGGATGTTTCCTATGAATGGTTAACCCAAACGCCCCAGTCATGTCTAAATCCTCACCATTTGGCAACATCCATTCAAATTTATGCACAAGATTTGCTAAAGCTATCTCGTTTATCACCGTTGCGAACGCAATTCCAGGACATCCTCTCCTTCCTGCGCCAAATGGGATTAAATCAAAATCATGACCCTTGAAATCTATCGAGTTGTTCATAAACCTTTCTGGCCGAAACTCCTCTGCTTCATCCCACACTTCTGGGTCTCTTCCAATAGCCCATGCATTGATCATAACTCGGGTCTTGGGTTTAATATCGTAGCCCTTTAGCTTTATGCATTGGGTTGATTCTCTCGGGACAAGAAGTGGG CCGTGGGACTAAGGGATATAGGCGCTGGATAAGCATTTGGACACTGTCCTCACTCCCGCCAAGTTCAGACTATAATCATGGAAGCTCTGGCGCTTCCTTCTATGAATTCTCTCACCATTTCCTGTTCTAATTTGCAGAAAGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCTACCTTGAAGTTCAGGCCCCTTCATGGTACCCGCCACTATTCCAATGTTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATTCGGGAGGGCAAAGTGAAAGTTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCAATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGGGGTTGGTGGAGTGGTGTGCCTACGGTATCCTACAATAGCCGCTTCTTGTCAGAAGTTCAAGAGAAATTTCCAAAAGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGATCTGGCCAGAGAAGGTCCTCAGCCTTTAAAATTTGCTGGGATTGGTGGGCTCTCAGAATTCCTTGGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTGCGGTCTCACTAAGGTCACTTACTGGGGTGGGTTGTGTAGTAGCATGAAACACATGAGAGGCTAAGGTCTCTGAGGTTTTGGCTAGAGTAGAGAGTTCTGTGTGATGAGGATGCTTGGAATTAATTATATGTCTTGGAGAGATCTGCTGATGCTCTGTTCTATATTCTTGAGTCCAGTTCTCATTAATCGGCTGCCTACATAATCATAATGGATACAATAAAGATAAAAGGCAACAAAAACACATACAATAAAGCCCCCAACATTCTAACAAGGAGTTGCCGTCGCTACAAGAGGATGTTTCCTATGAATGGTTAACCCAAACGCCCCAGTCATGTCTAAATCCTCACCATTTGGCAACATCCATTCAAATTTATGCACAAGATTTGCTAAAGCTATCTCGTTTATCACCGTTGCGAACGCAATTCCAGGACATCCTCTCCTTCCTGCGCCAAATGGGATTAAATCAAAATCATGACCCTTGAAATCTATCGAGTTGTTCATAAACCTTTCTGGCCGAAACTCCTCTGCTTCATCCCACACTTCTGGGTCTCTTCCAATAGCCCATGCATTGATCATAACTCGGGTCTTGGGTTTAATATCGTAGCCCTTTAGCTTTATGCATTGGGTTGATTCTCTCGGGACAAGAAGTGGG ATGGAAGCTCTGGCGCTTCCTTCTATGAATTCTCTCACCATTTCCTGTTCTAATTTGCAGAAAGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCTACCTTGAAGTTCAGGCCCCTTCATGGTACCCGCCACTATTCCAATGTTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATTCGGGAGGGCAAAGTGAAAGTTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCAATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGGGGTTGGTGGAGTGGTGTGCCTACGGTATCCTACAATAGCCGCTTCTTGTCAGAAGTTCAAGAGAAATTTCCAAAAGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGATCTGGCCAGAGAAGGTCCTCAGCCTTTAAAATTTGCTGGGATTGGTGGGCTCTCAGAATTCCTTGGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTGCGGTCTCACTAA MEALALPSMNSLTISCSNLQKGSFANLPGTLHHCKFYGQSTLKFRPLHGTRHYSNVIKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLTPREAGYAIQLSDKTLLDVRPSTEHQKAWVKGSTWIPIFEVDDKVDPGTLSRKVTSFMMGGWWSGVPTVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACELLYNAGYKNLFWVQGGLDAAEEEDLAREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLIAVFLAADALFIGAQQLGRYIQDLRSH Homology
BLAST of CmoCh10G000890 vs. ExPASy Swiss-Prot
Match: Q0WWT7 (Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STR11 PE=2 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 2.1e-112 Identity = 200/300 (66.67%), Postives = 239/300 (79.67%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy Swiss-Prot
Match: Q9SR92 (Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=STR10 PE=2 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 4.4e-25 Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy Swiss-Prot
Match: O48529 (Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STR9 PE=2 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.4e-18 Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy Swiss-Prot
Match: Q94A65 (Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g27700 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07 Identity = 42/156 (26.92%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy TrEMBL
Match: A0A6J1E1J7 (rhodanese-like domain-containing protein 11, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111429939 PE=4 SV=1) HSP 1 Score: 602.8 bits (1553), Expect = 7.5e-169 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy TrEMBL
Match: A0A6J1E4U4 (rhodanese-like domain-containing protein 11, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429939 PE=4 SV=1) HSP 1 Score: 598.2 bits (1541), Expect = 1.9e-167 Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy TrEMBL
Match: A0A6J1JIC0 (rhodanese-like domain-containing protein 11, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484855 PE=4 SV=1) HSP 1 Score: 594.0 bits (1530), Expect = 3.5e-166 Identity = 290/294 (98.64%), Postives = 291/294 (98.98%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy TrEMBL
Match: A0A6J1JIW5 (rhodanese-like domain-containing protein 11, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484855 PE=4 SV=1) HSP 1 Score: 589.3 bits (1518), Expect = 8.6e-165 Identity = 290/295 (98.31%), Postives = 291/295 (98.64%), Query Frame = 0
BLAST of CmoCh10G000890 vs. ExPASy TrEMBL
Match: A0A5D3BJF1 (Rhodanese-like domain-containing protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00970 PE=4 SV=1) HSP 1 Score: 553.5 bits (1425), Expect = 5.2e-154 Identity = 267/295 (90.51%), Postives = 283/295 (95.93%), Query Frame = 0
BLAST of CmoCh10G000890 vs. NCBI nr
Match: XP_022921794.1 (rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 602.8 bits (1553), Expect = 1.6e-168 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CmoCh10G000890 vs. NCBI nr
Match: KAG6589413.1 (Rhodanese-like domain-containing protein 11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 599.4 bits (1544), Expect = 1.7e-167 Identity = 292/294 (99.32%), Postives = 293/294 (99.66%), Query Frame = 0
BLAST of CmoCh10G000890 vs. NCBI nr
Match: XP_023515576.1 (rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 598.6 bits (1542), Expect = 2.9e-167 Identity = 291/294 (98.98%), Postives = 293/294 (99.66%), Query Frame = 0
BLAST of CmoCh10G000890 vs. NCBI nr
Match: XP_022921793.1 (rhodanese-like domain-containing protein 11, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 598.2 bits (1541), Expect = 3.8e-167 Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0
BLAST of CmoCh10G000890 vs. NCBI nr
Match: XP_023515575.1 (rhodanese-like domain-containing protein 11, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 594.0 bits (1530), Expect = 7.2e-166 Identity = 291/295 (98.64%), Postives = 293/295 (99.32%), Query Frame = 0
BLAST of CmoCh10G000890 vs. TAIR 10
Match: AT4G24750.1 (Rhodanese/Cell cycle control phosphatase superfamily protein ) HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-113 Identity = 200/300 (66.67%), Postives = 239/300 (79.67%), Query Frame = 0
BLAST of CmoCh10G000890 vs. TAIR 10
Match: AT3G08920.1 (Rhodanese/Cell cycle control phosphatase superfamily protein ) HSP 1 Score: 116.7 bits (291), Expect = 3.2e-26 Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 0
BLAST of CmoCh10G000890 vs. TAIR 10
Match: AT2G42220.1 (Rhodanese/Cell cycle control phosphatase superfamily protein ) HSP 1 Score: 95.1 bits (235), Expect = 9.8e-20 Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 0
BLAST of CmoCh10G000890 vs. TAIR 10
Match: AT4G27700.1 (Rhodanese/Cell cycle control phosphatase superfamily protein ) HSP 1 Score: 58.5 bits (140), Expect = 1.0e-08 Identity = 42/156 (26.92%), Postives = 74/156 (47.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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