CmoCh10G000590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G000590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Snurportin-1
Location	Cmo_Chr10: 279315 .. 279682 (-)
RNA-Seq Expression	CmoCh10G000590
Synteny	CmoCh10G000590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGATTCGAATGATCGAAGCTGAGGTTGACGTTTCTGTTGTGCTTTGGATGTTTGTAGATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCGAACGGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTCAAACATATTCTATTCTATATTGTATATTTCATGAAGTAAGTTTCTCGTAATTCCTATGCCATTTCATAGTCCACGTTTTTTTATTGATTAGTAAAGGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

mRNA sequence

ATGAATTTGATTCGAATGATCGAAGCTGAGGTTGACGTTTCTGTTGTGCTTTGGATATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCGAACGGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTCAAACATATTCTATTCTATATTGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

Coding sequence (CDS)

ATGAATTTGATTCGAATGATCGAAGCTGAGGTTGACGTTTCTGTTGTGCTTTGGATATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCGAACGGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTCAAACATATTCTATTCTATATTGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

Protein sequence

MNLIRMIEAEVDVSVVLWICVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFECPVDGQTYYVIDMIC

Homology

[Close]

BLAST of CmoCh10G000590 vs. ExPASy Swiss-Prot
Match: Q5ZI43 (Snurportin-1 OS=Gallus gallus OX=9031 GN=SNUPN PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.3e-06
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 2   NLIRMIEAEVDVSVVL---WICVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPN 61
           N + + E  VDV V L   WI V+  P GKR  VV+S G+T +  ++G  ++RFPS LP 
Sbjct: 102 NQLMLSEWLVDVPVDLEQEWIVVVC-PVGKRALVVASRGSTAAYTKSGFCVNRFPSLLPG 161

Query: 62  GAKTKKCLWIRSNIFYSILFECPVD--GQTYYVIDMIC 95
           G +        +   Y IL +C  +   QTYY++D++C
Sbjct: 162 GNRHN----TMNEKVYCIL-DCIYNEAEQTYYILDVMC 193

[Close]

BLAST of CmoCh10G000590 vs. ExPASy Swiss-Prot
Match: O95149 (Snurportin-1 OS=Homo sapiens OX=9606 GN=SNUPN PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 8.1e-05
Identity = 34/99 (34.34%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 2   NLIRMIEAEVDVSVVL---WICVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPN 61
           N + + E  +DV   L   WI V+  P GKR  +V+S G+T +  ++G  ++RF S LP 
Sbjct: 100 NQLMLSEWLIDVPSDLGQEWIVVVC-PVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPG 159

Query: 62  GAK---TKKCLWIRSNIFYSILFECPVDGQTYYVIDMIC 95
           G +   T K   I   I+  +        QTYYV+D++C
Sbjct: 160 GNRRNSTAKDYTILDCIYNEV-------NQTYYVLDVMC 190

[Close]

BLAST of CmoCh10G000590 vs. ExPASy Swiss-Prot
Match: Q80W37 (Snurportin-1 OS=Mus musculus OX=10090 GN=Snupn PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 8.1e-05
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 2   NLIRMIEAEVDVSVVL---WICVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPN 61
           N + + E  +DV   L   WI V+  P GKR  +V+S G+T +  ++G  ++RF S LP 
Sbjct: 101 NQLMLSEWLIDVPSDLGQEWIVVVC-PVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPG 160

Query: 62  GAKTKKCLWIRSNIFYSILFECPVDGQTYYVIDMIC 95
           G +          I   I  E     QTYYV+D++C
Sbjct: 161 GNRRNSTTAKDYTILDCIYSEV---NQTYYVLDVMC 192

[Close]

BLAST of CmoCh10G000590 vs. ExPASy Swiss-Prot
Match: Q68FP5 (Snurportin-1 OS=Rattus norvegicus OX=10116 GN=Snupn PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 8.1e-05
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 2   NLIRMIEAEVDVSVVL---WICVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPN 61
           N + + E  +DV   L   WI V+  P GKR  +V+S G+T +  ++G  ++RF S LP 
Sbjct: 101 NQLMLSEWLIDVPSDLGQEWIVVVC-PVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPG 160

Query: 62  GAKTKKCLWIRSNIFYSILFECPVDGQTYYVIDMIC 95
           G +          I   I  E     QTYYV+D++C
Sbjct: 161 GNRRNSTTAKDYTILDCIYSEV---NQTYYVLDVMC 192

[Close]

BLAST of CmoCh10G000590 vs. ExPASy TrEMBL
Match: A0A0A0LNL4 (Snurportin-1 OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.7e-19
Identity = 58/76 (76.32%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS+LPNGAKTKK     S   YSIL +C
Sbjct: 171 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSSLPNGAKTKKA--SGSGQTYSIL-DC 230

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDMIC
Sbjct: 231 IFHETDQTYYVIDMIC 243

[Close]

BLAST of CmoCh10G000590 vs. ExPASy TrEMBL
Match: A0A5A7URL4 (Snurportin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00570 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.6e-19
Identity = 59/77 (76.62%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSIL--- 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK      S   YSIL   
Sbjct: 605 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNA--SGSGQTYSILDCI 664

Query: 81  FECPVDGQTYYVIDMIC 95
           F  P   QTYYVIDMIC
Sbjct: 665 FHEP--DQTYYVIDMIC 677

[Close]

BLAST of CmoCh10G000590 vs. ExPASy TrEMBL
Match: A0A1S4E4Q9 (Snurportin-1 OS=Cucumis melo OX=3656 GN=LOC103502323 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.6e-19
Identity = 59/77 (76.62%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSIL--- 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK      S   YSIL   
Sbjct: 135 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNA--SGSGQTYSILDCI 194

Query: 81  FECPVDGQTYYVIDMIC 95
           F  P   QTYYVIDMIC
Sbjct: 195 FHEP--DQTYYVIDMIC 207

[Close]

BLAST of CmoCh10G000590 vs. ExPASy TrEMBL
Match: A0A072UZJ7 (Snurportin-1 OS=Medicago truncatula OX=3880 GN=25489491 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPS LPNGA+TK      SN  YSIL +C
Sbjct: 114 VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSKLPNGARTKDVNSGSSN-SYSIL-DC 173

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDM+C
Sbjct: 174 IFHEQDQTYYVIDMVC 187

[Close]

BLAST of CmoCh10G000590 vs. ExPASy TrEMBL
Match: A0A2K3P2G2 (Snurportin-1 OS=Trifolium pratense OX=57577 GN=L195_g006036 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS LPNGA+TK+     SN  YSIL +C
Sbjct: 104 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSKLPNGARTKEVSSGSSN-SYSIL-DC 163

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDM+C
Sbjct: 164 IFHEQDQTYYVIDMVC 177

[Close]

BLAST of CmoCh10G000590 vs. NCBI nr
Match: KAG7023066.1 (hypothetical protein SDJN02_14090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 67/75 (89.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 20  CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFE 79
           CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIR        FE
Sbjct: 68  CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIR--------FE 127

Query: 80  CPVDGQTYYVIDMIC 95
           CPVDGQTYYVIDMIC
Sbjct: 128 CPVDGQTYYVIDMIC 134

[Close]

BLAST of CmoCh10G000590 vs. NCBI nr
Match: KGN63485.1 (hypothetical protein Csa_013248 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.6e-19
Identity = 58/76 (76.32%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS+LPNGAKTKK     S   YSIL +C
Sbjct: 171 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSSLPNGAKTKKA--SGSGQTYSIL-DC 230

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDMIC
Sbjct: 231 IFHETDQTYYVIDMIC 243

[Close]

BLAST of CmoCh10G000590 vs. NCBI nr
Match: XP_004138050.1 (snurportin-1 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.6e-19
Identity = 58/76 (76.32%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS+LPNGAKTKK     S   YSIL +C
Sbjct: 135 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSSLPNGAKTKKA--SGSGQTYSIL-DC 194

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDMIC
Sbjct: 195 IFHETDQTYYVIDMIC 207

[Close]

BLAST of CmoCh10G000590 vs. NCBI nr
Match: XP_038879771.1 (snurportin-1 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-19
Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK      S   YSIL +C
Sbjct: 135 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNA--SGSGQTYSIL-DC 194

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDMIC
Sbjct: 195 IFQETDQTYYVIDMIC 207

[Close]

BLAST of CmoCh10G000590 vs. NCBI nr
Match: XP_016903207.1 (PREDICTED: snurportin-1 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 9.5e-19
Identity = 59/77 (76.62%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSIL--- 80
           V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK      S   YSIL   
Sbjct: 135 VFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNA--SGSGQTYSILDCI 194

Query: 81  FECPVDGQTYYVIDMIC 95
           F  P   QTYYVIDMIC
Sbjct: 195 FHEP--DQTYYVIDMIC 207

[Close]

BLAST of CmoCh10G000590 vs. TAIR 10
Match: AT4G24880.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-18
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 21  VLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRSNIFYSILFEC 80
           VLARP+GKRCFVVSS+GTT+SR+RNGS LH FPSALP GA+ K      ++  YSIL +C
Sbjct: 119 VLARPAGKRCFVVSSDGTTVSRVRNGSTLHLFPSALPGGARKKGASGPANS--YSIL-DC 178

Query: 81  --PVDGQTYYVIDMIC 95
                 QTYYVIDM+C
Sbjct: 179 IFHESDQTYYVIDMVC 191

The following BLAST results are available for this feature:

BLAST of CmoCh10G000590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZI43	3.3e-06	37.76	Snurportin-1 OS=Gallus gallus OX=9031 GN=SNUPN PE=2 SV=1	[more]
O95149	8.1e-05	34.34	Snurportin-1 OS=Homo sapiens OX=9606 GN=SNUPN PE=1 SV=1	[more]
Q80W37	8.1e-05	34.38	Snurportin-1 OS=Mus musculus OX=10090 GN=Snupn PE=2 SV=1	[more]
Q68FP5	8.1e-05	34.38	Snurportin-1 OS=Rattus norvegicus OX=10116 GN=Snupn PE=2 SV=1	[more]

BLAST of CmoCh10G000590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL4	2.7e-19	76.32	Snurportin-1 OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=3 SV=1	[more]
A0A5A7URL4	4.6e-19	76.62	Snurportin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00570 P...	[more]
A0A1S4E4Q9	4.6e-19	76.62	Snurportin-1 OS=Cucumis melo OX=3656 GN=LOC103502323 PE=3 SV=1	[more]
A0A072UZJ7	1.0e-18	75.00	Snurportin-1 OS=Medicago truncatula OX=3880 GN=25489491 PE=3 SV=1	[more]
A0A2K3P2G2	1.3e-18	73.68	Snurportin-1 OS=Trifolium pratense OX=57577 GN=L195_g006036 PE=3 SV=1	[more]

BLAST of CmoCh10G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023066.1	1.6e-29	89.33	hypothetical protein SDJN02_14090, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN63485.1	5.6e-19	76.32	hypothetical protein Csa_013248 [Cucumis sativus]	[more]
XP_004138050.1	5.6e-19	76.32	snurportin-1 [Cucumis sativus]	[more]
XP_038879771.1	7.3e-19	76.32	snurportin-1 [Benincasa hispida]	[more]
XP_016903207.1	9.5e-19	76.62	PREDICTED: snurportin-1 [Cucumis melo]	[more]

BLAST of CmoCh10G000590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24880.1	2.3e-18	63.16	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.470.30	DNA ligase/mRNA capping enzyme	coord: 11..94 e-value: 4.0E-18 score: 67.2
IPR017336	Snurportin-1	PANTHER	PTHR13403	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	coord: 14..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G000590.1	CmoCh10G000590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061015	snRNA import into nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding