CmoCh10G000400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G000400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr10: 198185 .. 199140 (-)
RNA-Seq ExpressionCmoCh10G000400
SyntenyCmoCh10G000400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGATATCTCTGGCTCGGTCTGTATAATGTATCTTATAGATTTAAGATTTTTAGTAACTTGTTAGCCTAGACCCATTTTTTCCCTTCCCCCGCAAACTAATTGTATTTTAGTCCTCTCCCTAGACAAGTAGCTAGTTGATTACATCTTATCGATGGAATGAGGTTTAAAATATTAGAATGCAGAGATGATTATGGCGAATTCCTCCATCTTGGTTGCGCTCTATCATCGTACAATTGGCTTTAATGTCTATATTTTTTTTTTATAATAATCAGGGTTGAAGGAGATGGAATGTATCTTGTGCTCTTAAATCCAATGTCAGAAGTCAGAAAAGGTCATTTGGTGTAGCTGGCATGCAAATTCTTACATGCTCAAAATTTTATTGGAACTTCTGTGACAATTTATTTTGGCTAGTTACTGGCGGTGCTCAATGTACTAACTTCTTTTGCAGATTAAAAAAAAAGAATTTTATTTATTTATTTTAGTACTTGTTGAAGTGTTTAATTATATTGACTGTGTGGCATGTAGAAGCTGAAGCAGACTGCTTGTCCATTACTAATCCCTTGCTAGGCGTCTCACCATGTCACAGAAGCAGACAGCTCCGTTGATTGGAAAGTGGGAGCATTGGAGATATTACCAAGCCTGAACCCGACGGCGACACACAGTCTTGGCAAGCTGGTTTTTGACATCCCTGGCGCTACTAACATACTTCGAGACGCTCCCTCTTGTTTCACAGGTTTCCTGACAATTCCTTCCTTTTGTTAAGGTTAAATGGTGCTATACTATTGTCCATTTAAGGCATATCTCCTTTGTGATTTTGTTTTTGGTTTCAATCAAAATATACCTCGTTATTCATTTTCTGGCTTCCTATCATGATCACGTTTGTTTACTGCTCTTGAAATCCCACGAGGATAGTCGTTAATCTTGCAATAATGTCTCTCTCAGGTGACTAA

mRNA sequence

ATGTCTAGATATCTCTGGCTCGGTCTGTATAATGTATCTTATAGATTTAAGATTTTTAAAGCAGACAGCTCCGTTGATTGGAAAGTGGGAGCATTGGAGATATTACCAAGCCTGAACCCGACGGCGACACACAGTCTTGGCAAGCTGGTTTTTGACATCCCTGGCGCTACTAACATACTTCGAGACGCTCCCTCTTGTTTCACAGGTGACTAA

Coding sequence (CDS)

ATGTCTAGATATCTCTGGCTCGGTCTGTATAATGTATCTTATAGATTTAAGATTTTTAAAGCAGACAGCTCCGTTGATTGGAAAGTGGGAGCATTGGAGATATTACCAAGCCTGAACCCGACGGCGACACACAGTCTTGGCAAGCTGGTTTTTGACATCCCTGGCGCTACTAACATACTTCGAGACGCTCCCTCTTGTTTCACAGGTGACTAA

Protein sequence

MSRYLWLGLYNVSYRFKIFKADSSVDWKVGALEILPSLNPTATHSLGKLVFDIPGATNILRDAPSCFTGD
Homology
[Close]
BLAST of CmoCh10G000400 vs. NCBI nr
Match: KAG6589366.1 (Protein DEK, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 20  KADSSVDWKVGALEILPSLNPTATHSLGKLVFDIPGATNILRDAPSCFT 69
           +ADSSVDWKVGALEILPSLNPTATHSLGKLVFDIPGATNILRDAPSCFT
Sbjct: 598 EADSSVDWKVGALEILPSLNPTATHSLGKLVFDIPGATNILRDAPSCFT 646

The following BLAST results are available for this feature:
BLAST of CmoCh10G000400 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh10G000400 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh10G000400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589366.15.4e-1997.96Protein DEK, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh10G000400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G000400.1CmoCh10G000400.1mRNA