CmoCh09G013210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G013210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionregulator of nonsense transcripts UPF3-like
LocationCmo_Chr09: 11943632 .. 11951009 (+)
RNA-Seq ExpressionCmoCh09G013210
SyntenyCmoCh09G013210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACCCGTTGGAGCGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACAATATTGATGATCGATTCGCTGGTCGCTACAATTGGTGTTACTATCGTCCTGGAAAGACCAGGTTCGCCCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCGCTTACCTTTTCTCTAATTCCAGCTTTCAAACGAAAAATTAGTCTTATAAACTGGGTTTTCAGTTATATGTTGTCATATGTTGTTATATGTCGTCTTGGATTTTCAGAAATCTGGAGGTTGAATGAGTAGGGCCATGCGCGAAGTGGGTATCTCTTGGATTGTGTCTTATGTGCTTTACGCTCTTTCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTTAGGTGGGCTATTGGGGAGGGTTGGTGATTAGAATAATGTAGGAGACTTTTTTCTCCCCTCCAATTTCATGCCCAAATGTGTATGATTATGATTCTGGAAACGAAATCCAGCAATCGTTCTAGAGTTCGTGTGTTTTTTTGGTTAGAATCGGCTAAGTTCTTACTTTCTCATGTTGTGTACTTTCTCTTGGTTTCTAAAGCTCACAATACTGAAGGTTTTTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGACCAGAGATATGCTCGAGCTTACATAGATTTTACGCGACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGGCATGTTTTCGTTAATGAGAAGGGTAAAGCCGACAGCTTGATCTTTTTTCTTTATTGAACTTATGAGTAGCTTCTTGTTTCTTGTGGGTTTGGTGGGTGATTCATTGAAACCTTACCCATTTCTTAGAAGTGGGAGATAACGAATTTATGAATGATTCCATTGCTTAATGTTGATTGATATGCTTACAGATTGCTCCCTTTGAGGTTTTCTGATGTGCATTACCCATTTCTAAGAACTGTTTAATGCTTGGATCATGTTTCTCTCCATATGTTTAAAGTTTCGATTGAAGTTAACTTATTTAGTCAAATAATTACAGGTGCTCAGTTTAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCCAGATCATCGACCAAAAAGGATGGTCGTGAGGGGACTATATACAAAGGTAATGATCGGTTGGTGAGAAGCGGAGAGTACGTGGTTGATCTTGTTTTATATTGGTTATTATTTTAGTGTAAATTGTCTTTTCTCGATGAAAGCAGATCCGGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTTTGTTATTATGTTCACTGACTGACTTATTGATATTACTCGCGTTCGTATATGTTTATAATGTATAATAGGGTGCCGAAAAGTTGCTGAATACTCATTATGTTACTTTGCTATGAGCTTCCATAGGGATACTATTCACTTTAAATTCAGATAATTCTTGAAGTTTTATATTTCTACTTTTGTTTGCAGCTGCTGCGAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAGAGCGGAACGCAGGTGAGATTGCTGTATTCTTAATACATGGACCTGTGTGCTATATTTTAATCATTCAGAGAAAATGAAACCACTTTCTTTATTTTTTGTACTTCATAAGGTGTTGGTTCTGTCCATGTAGAGATTATTATTTATACATTCACTTCAACATTAAGTCGAGATTCATTCATTGGAACTCGTCTGCTGCTTGTGTAATGATTTCAGTATCTTTTCCTTTCGTATTGGTTAATACCATGCATTATGTGAATCCAAATGCTCTTACGATGGTTTTCTATGTGAGCTTAAAGATTGTATTCCTCTTCTAATTTATAATATACCAATTCCTCATTATCTCATGTAAAGTTTTTTTTGGTTCAATAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGGAGCATCCTCTAGAAAGCCTGAGTCGAATTCCGTGAAGCGAGGGATGGAGAAGAAGAAGGCATGTGCTACTTCTTCAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTTTATAAAATTCACAAGTGTTGGTTTGCTAGTGTCTCCACTATTTTTCCCCTATAGTTTTTGGGAAAATAAGCTTTCTTTGCTCATGTTAGATCTAAGGATGGGAAGCAGAATGTTTTTAACTAACAAAATAGGATAATTACAAAAGTCCTTACAAACCAAGCAACTCTTAAGGCGTCAACCAAAATTGGAAATGAAGGCAGCAAACTGCCATCTCCCAAGGATGCGATCTAAATCCTCAAATGCTCTCCTTCTAAGAATGCATTGGTGCAGCCTTAACACACAAAGGAAGATTGCTTCTGTATTTCATATGTAGTGTCAACTCCCTAATGCAAGCCCATACTCCTAGTCCTGCAGTTCTAGAAACTTGACCTTCTTGGAAATTTGTACTTTCGACAGTGAGGTGAAGCAAAAACTAATGATATCAATGGTTTTGACTGCAGAAACCAATCTAAAGTTTCTAATGTTATTGGTGGAAATAGTTTGCCTAACTGTGGTGTAAACTGTGTCATGCTACACCACGTCGAGGTTATGATAAGTGAACGTTGAAATTAAGGCTTTAGTTTTTTGCCCCTCGCACTTACTTCGTGGATACCCTTTTTTTGTGAACAAATTGTGTCTATATTTTTGTCTGAAGACTTTAGTTCTGTTATACATGCAGTATATTTTAAAGGAGAGTGTGAAGAACACAAATCGCAGAGACAAGTCAAATTTCATTCTGGTGCCCAGGCGAGAGGATCAGTTAGCTACCTCAGGTGGAATTGGAATTTCTGATGTTGGTACAGGTATTTCTATTTAGGTTCTTTGTGGTCAGCGACATCATTTCTGTCATTTTTGTTTTGTTCTAAGTTATTGATCCGATATTTTATTGTTAGGCTGTTGAAAAATATTATCTTAGCAATTCAGTGTTTCACGTCATTGAGGTGCAGGGGAACGTGAGCCTATTTGATTTAAGATCTGAACACTTTATGCACTATTCCGCTGCTGGATTTTGTTTGTTCTTTTTTTTTTTTTTTTTTGGAAGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAGAGTTCTCACAATCATTTTATATTTTTTCCCATTTCAAATTACCCTGAGCCCAGTAGTAATGTTCTTGTAATTTTCACTTTCCTCTTGATTAATAATTGTTTTCTTGTTTCTTTCTTGGATTCTGCCATATTGTGCTGTTGCAGATTGCAGGATTGTAATATTTGAACATGCATTTTAATATACGCATTATTAAGTTACCTTAAACACTTGGAAGTGATATATTTGAGGGATGGTAGGGAAAAGGAAAAAGGAAAAAGGAAAACAAGGTTGTTCATTAGATAGTGCACATTGTCTGAAATTTTGAAATATGTTCTTTCCCTGCATGGGACTTTGCTACACATTTGTTTCTTTTAATTTATCAATATGCTCTACATGTTTATAATTAACTTGCAGTCTAGAATTTGAAGCCTTTGTTTCATATGTATCTGTAACAGCTGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTACGTTTCTTTAGTTCTCTCGACTAATTATTCATTTCCAACTTTGTTACTCGCTTTAGAATTATTAATTTGTGTATCAATTGTCACCCAAGGCTGATTTTGGAGGGCACAAATTCTATTCTCTTGCCTCAAATTTTGACACTTGCTTATCTATTTCTTGGATAATGATACATTTGCAGGTTTCTGATGGTATGCTACAGTTGCAGAGCGCGACATCTTCTGGGACTTCTCCTGCTAGTGCATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGAATCACGTCATGGACAGACTTCATCAGGAGCTCCATCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACTACCTCGTTCCATTAATGCTCGATCTGGGTCTAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTTGGAAGGGGATGGAAAAAGGCCTTCAGATGGTAAACCTAGTAAGAAGGAACTTCATGGCCTGGGTAGTCTTAGCGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGTGTGTGGGCGCCACGTAGTCGTTCAGATGCTTCAGTCTCACAACTTGAGGAATCCTCTGTTGCACAATCTAGCCATTTGCTTTCTGACTCAGTTGAAGGTACTACTATTATAATGCTTTGGAGACGATGAGGTGCATATATATACAATCATATTATTGAAGTATCGGACCTTGATCATTGTGTCAAATCATACTGCTTGATATGAGCTAAATGATTTATATAGACTCTGTTTCACGAGAAATTATAACCCAATATATATTTTATGCATTTACAGCATACCGTGGGGAAATGAAAGAAGATATTCATGTAAGCAGGACTGGGGATGTTACAACTACTGTGAGTGGACGTAGCAGTTCAGTGGAAAATGGTTGTACTTCCTCACGAACGCTTCTTACGTTCACTTATTTTAGGAAACTTTAAAAGTACTTTCTACTTTTCGTTTAATCTAAAACATGTTGTGCTTTCTTTAGGTTCTGTTAGACATGGTGGACGTCGTGGGGCTGGGCATGTCATGAAGGATGATGGGTCATCGAACCCAAATGAAGGGAAGCCGTCTAAAAGAGGTGTTGTCAGTGGTCATGAGGTTCGCTTCTGCATCCATGCTAGTGATTGTATCTCTCGTGTTACATGATCACTTCTTTTTCAGAAACTCATTATCTTTGATGCCTATGCAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAACATATTTAAATCATGTGAGTCTTTTGCATATTAGCAATTTTTTATCTCCTTTATGATACGAGCAAGACTGTTTTAAGAGGTTTTTGTTCCCAGAGATGTCCAACCGAACGACAAAGCAGTGTCTAAATTAACTAAAGATTCTGGTTTAAAGTAACCATAGCACATGTTTGAATCCATCCATCGTGCCAACATTTTGCTAATATAATTAAGAGGTTATTGCTTATATTGCTTAGATTCATCGCCTTCCTCACTGCTGCCATGCATTCTCCTTGAATTCATCTGATATCTGCATATAATTAACATATTGGCTGGATTTTGTGTGCTGTTTTATTTATTGTTCTCTATTGGATCGTGACGATGTGTATGCTATCGAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATCGCAAGATGCAATTGTTTCGTATACGGGTGGTTACAAAACACAGAAGTGTTCTCTGGTTGAAGACCGAATATGCGTTCTATGGATTTCTGGATTTACAAAATCGAAGTTTTTTTGGTTGAAGACCAATATGGTTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTTGCCCAAACATACCAAGTGTGACACTGCTTCACCTGGAGGAACGTGCTGGTATATACATACGTGGCTTGCGTGACACGAGATCAAAGCCAAGAGGGAGATTCATTCTAACTTTCCCTTTGCTTGATGTTTTGGTCATAATGCTATGTTTCTTTTCCCTTAGGAGCTTGAAATATAGAAAGTACCTAGTAGTACTCTGCTTACCATAATCTCACTGGGGGTGGTTAGTACACAATTGTACTTGATTCTTTGCGTGGGGCTGTGAATCAGAATCATCAGACTTAATACTCTTTCATGTCGTATATGAAGAATGTGATGGATGATTATGATATATGTGGACTAATATATCACTTTTATTTA

mRNA sequence

ATGAAGGACCCGTTGGAGCGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACAATATTGATGATCGATTCGCTGGTCGCTACAATTGGTGTTACTATCGTCCTGGAAAGACCAGGTTCGCCCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTGGGCTATTGGGGAGGGTTGGTGATTAGAATAATTCAGAAGGACCAGAGATATGCTCGAGCTTACATAGATTTTACGCGACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGGCATGTTTTCGTTAATGAGAAGGGTGCTCAGTTTAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCCAGATCATCGACCAAAAAGGATGGTCGTGAGGGGACTATATACAAAGATCCGGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGCTGCTGCGAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAGAGCGGAACGCAGTATATTTTAAAGGAGAGTGTGAAGAACACAAATCGCAGAGACAAGTCAAATTTCATTCTGGTGCCCAGGCGAGAGGATCAGTTAGCTACCTCAGGTGGAATTGGAATTTCTGATGCTGTTGAAAAATATTATCTTAGCAATTCAGTGTTTCACGTCATTGAGGTGCAGGGGAACATTGCAGGATTTCTAGAATTTGAAGCCTTTGTTTCATATGTATCTGTAACAGCTGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGGTATGCTACAGTTGCAGAGCGCGACATCTTCTGGGACTTCTCCTGCTAGTGCATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGAATCACGTCATGGACAGACTTCATCAGGAGCTCCATCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACTACCTCGTTCCATTAATGCTCGATCTGGGTCTAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTTGGAAGGGGATGGAAAAAGGCCTTCAGATGGTAAACCTAGTAAGAAGGAACTTCATGGCCTGGGTAGTCTTAGCGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGTGTGTGGGCGCCACGTAGTCGTTCAGATGCTTCAGTCTCACAACTTGAGGAATCCTCTGTTGCACAATCTAGCCATTTGCTTTCTGACTCAGTTGAAGACTCTGTTTCACGAGAAATTATAACCCAATATATATTTTATGCATTTACAGCATACCGTGGGGAAATGAAAGAAGATATTCATGTAAGCAGGACTGGGGATGTTACAACTACTGTGAGTGGACGAAACTTTAAAAGTACTTTCTACTTTTCGTTTAATCTAAAACATGTTGTGCTTTCTTTAGGTTCTGTTAGACATGGTGGACGTCGTGGGGCTGGGCATGTCATGAAGGATGATGGGTCATCGAACCCAAATGAAGGGAAGCCGTCTAAAAGAGGTGTTGTCAGTGGTCATGAGGTTCGCTTCTGCATCCATGCTAGTGATTAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAACATATTTAAATCATATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATCGCAAGATGCAATTGTTTCGTATACGGGTGGTTACAAAACACAGAAGTGTTCTCTGGTTGAAGACCGAATATGCGTTCTATGGATTTCTGGATTTACAAAATCGAAGTTTTTTTGGTTGAAGACCAATATGGTTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTTGCCCAAACATACCAAGTGTGACACTGCTTCACCTGGAGGAACGTGCTGGTATATACATACGTGGCTTGCGTGACACGAGATCAAAGCCAAGAGGGAGATTCATTCTAACTTTCCCTTTGCTTGATGTTTTGGTCATAATGCTATGTTTCTTTTCCCTTAGGAGCTTGAAATATAGAAAGTACCTAGTAGTACTCTGCTTACCATAATCTCACTGGGGGTGGTTAGTACACAATTGTACTTGATTCTTTGCGTGGGGCTGTGAATCAGAATCATCAGACTTAATACTCTTTCATGTCGTATATGAAGAATGTGATGGATGATTATGATATATGTGGACTAATATATCACTTTTATTTA

Coding sequence (CDS)

ATGAAGGACCCGTTGGAGCGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACAATATTGATGATCGATTCGCTGGTCGCTACAATTGGTGTTACTATCGTCCTGGAAAGACCAGGTTCGCCCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTGGGCTATTGGGGAGGGTTGGTGATTAGAATAATTCAGAAGGACCAGAGATATGCTCGAGCTTACATAGATTTTACGCGACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGGCATGTTTTCGTTAATGAGAAGGGTGCTCAGTTTAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCCAGATCATCGACCAAAAAGGATGGTCGTGAGGGGACTATATACAAAGATCCGGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGCTGCTGCGAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAGAGCGGAACGCAGTATATTTTAAAGGAGAGTGTGAAGAACACAAATCGCAGAGACAAGTCAAATTTCATTCTGGTGCCCAGGCGAGAGGATCAGTTAGCTACCTCAGGTGGAATTGGAATTTCTGATGCTGTTGAAAAATATTATCTTAGCAATTCAGTGTTTCACGTCATTGAGGTGCAGGGGAACATTGCAGGATTTCTAGAATTTGAAGCCTTTGTTTCATATGTATCTGTAACAGCTGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGGTATGCTACAGTTGCAGAGCGCGACATCTTCTGGGACTTCTCCTGCTAGTGCATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGAATCACGTCATGGACAGACTTCATCAGGAGCTCCATCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACTACCTCGTTCCATTAATGCTCGATCTGGGTCTAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTTGGAAGGGGATGGAAAAAGGCCTTCAGATGGTAAACCTAGTAAGAAGGAACTTCATGGCCTGGGTAGTCTTAGCGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGTGTGTGGGCGCCACGTAGTCGTTCAGATGCTTCAGTCTCACAACTTGAGGAATCCTCTGTTGCACAATCTAGCCATTTGCTTTCTGACTCAGTTGAAGACTCTGTTTCACGAGAAATTATAACCCAATATATATTTTATGCATTTACAGCATACCGTGGGGAAATGAAAGAAGATATTCATGTAAGCAGGACTGGGGATGTTACAACTACTGTGAGTGGACGAAACTTTAAAAGTACTTTCTACTTTTCGTTTAATCTAAAACATGTTGTGCTTTCTTTAGGTTCTGTTAGACATGGTGGACGTCGTGGGGCTGGGCATGTCATGAAGGATGATGGGTCATCGAACCCAAATGAAGGGAAGCCGTCTAAAAGAGGTGTTGTCAGTGGTCATGAGGTTCGCTTCTGCATCCATGCTAGTGATTAA

Protein sequence

MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLLVGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPIVTPLMEFVRQKRAVESGTQYILKESVKNTNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFVSYVSVTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSMIRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLEGDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVAQSSHLLSDSVEDSVSREIITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFYFSFNLKHVVLSLGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEVRFCIHASD
Homology
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BLAST of CmoCh09G013210 vs. ExPASy Swiss-Prot
Match: Q9FVW4 (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 7.9e-87
Identity = 220/571 (38.53%), Postives = 296/571 (51.84%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MK+PL++ KVV+RHLPPSL  SDL   ID RFA RYNW  +RPGK+ +            
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSY------------ 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                        K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQFKA+VEYAPS
Sbjct: 61  -------------KNQKYSRAYVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVP+ S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQS A+K  PI
Sbjct: 121 QRVPKPSDKKDPREGSISKDPDYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPI 180

Query: 181 VTPLMEFVRQKRAVESGTQYIL---------------KESVKNTNRRDKSNFILVPRRED 240
           VTPLMEF+RQKRA   G Q +                K S + + R  +    +      
Sbjct: 181 VTPLMEFIRQKRATVMGPQGLSDIRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSK 240

Query: 241 QLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFVSYVSVTADSGKKKILLL 300
            +       +S +   Y  SNS     E+ GN    +  ++    +++T DSGKKKILLL
Sbjct: 241 NVPRKTTADVSSSKPDYRQSNSSGK--ELPGNETAAI-IDSSPPGIALTMDSGKKKILLL 300

Query: 301 KGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSMIRSILLNNESRHGQTSS 360
           + K+RD         + Q   ++ +  ++ S+ NQ+ +  G +I+ ILL N+SR  Q+S+
Sbjct: 301 RSKDRDNPDNPPPQPE-QHIDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSST 360

Query: 361 GAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLEGDGKRPSDGKPSKKELH 420
              S Q+++   ++N KR  R  N R+G                            K+ H
Sbjct: 361 FVQSEQRVEPSEAENYKRPSRPANTRAG----------------------------KDYH 420

Query: 421 GLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVAQSSHLLSDSVEDSVSRE 480
             G++SEKQE+R RNKDRPDR +WAP  R D S  Q   S+                   
Sbjct: 421 TSGTISEKQERRTRNKDRPDRVMWAP--RRDGSEDQPLSSA------------------- 465

Query: 481 IITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFYFSFNLKHVVLSLGSVRH 540
                         GE+K+ +   R+G+V  +  G   ++               GS RH
Sbjct: 481 -----------GNNGEVKDRMFSQRSGEVVNSSGGHTLEN---------------GSARH 465

Query: 541 GGRRGAGHVMKDDGSSNPNEGKPSKRGVVSG 557
             RR  G   K++      EGK S+RG   G
Sbjct: 541 SSRRVGGRNRKEEVVI--GEGKTSRRGSGGG 465

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BLAST of CmoCh09G013210 vs. ExPASy Swiss-Prot
Match: B0S733 (Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-14
Identity = 53/139 (38.13%), Postives = 84/139 (60.43%), Query Frame = 0 

Query: 78  YARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSS-TKKDGREGT 137
           ++RAYI+F  PED+  F + FDG+VF++ KG ++ AVVE+AP Q+V +    KKD + GT
Sbjct: 86  FSRAYINFKNPEDIIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGT 145

Query: 138 IYKDPDYLEFLKLIAKPAE-HLPSAEIQLERKEAE-QSAAAKETPIVTPLMEFVRQKRAV 197
           I +DP+Y  FL+  +   E  + + E  L   EA+ +   AK T   TPL+E+++ K+  
Sbjct: 146 IEEDPEYRRFLENYSCDEEKSMANPETLLGEIEAKTRELIAKRT---TPLLEYIKNKKLE 205

Query: 198 ESGTQYILKESVKNTNRRD 214
           +   Q I +E  +   RR+
Sbjct: 206 K---QRIREEKREERRRRE 218

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BLAST of CmoCh09G013210 vs. ExPASy Swiss-Prot
Match: Q9H1J1 (Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-13
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = 0 

Query: 78  YARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSS-TKKDGREGT 137
           Y+RAYI+F  P+D+  F + FDG++F++ KG ++ AVVE+AP Q++ +    KKD + G+
Sbjct: 111 YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGS 170

Query: 138 IYKDPDYLEFLKLIAKPAEHL-PSAEIQLERKEAE-QSAAAKETPIVTPLMEFVRQKRAV 197
           I  DP+Y +FL+      E    + E  L   EA+ +   A+ T   TPL+E+++ ++  
Sbjct: 171 IEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRT---TPLLEYIKNRKLE 230

Query: 198 ESGTQYILKESVKNTNRRD 214
           +   Q I +E  +   RR+
Sbjct: 231 K---QRIREEKREERRRRE 243

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BLAST of CmoCh09G013210 vs. ExPASy Swiss-Prot
Match: Q10267 (Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=upf3 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-10
Identity = 51/205 (24.88%), Postives = 91/205 (44.39%), Query Frame = 0 

Query: 9   KVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLLVGYWGGLV 68
           KV++ +LPP+LP      +I+  F     W  +  GK                       
Sbjct: 13  KVLVFNLPPTLPEQVFLQSINS-FLPHVEWHRFSKGKA---------------------- 72

Query: 69  IRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSST 128
             +  + +  + AY+ F     V EF   + GH F+++K   ++A+V  AP Q++P S  
Sbjct: 73  -TVGTRSELLSFAYLKFQSATAVQEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKV 132

Query: 129 KKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAA----AKETPIVTPL 188
           K D  EG++ +DP + EF                +++R+   Q+A+     ++    TPL
Sbjct: 133 KADSLEGSLEQDPKFQEF----------------KVQRESYSQTASNDDVIEKLQTSTPL 177

Query: 189 MEFVRQKR--AVESGTQYILKESVK 208
           ++++ +K+   VE G     K+SVK
Sbjct: 193 LQYLAEKKNAVVEKGKSKPSKKSVK 177

[Close]
BLAST of CmoCh09G013210 vs. ExPASy Swiss-Prot
Match: Q9BZI7 (Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-10
Identity = 100/387 (25.84%), Postives = 170/387 (43.93%), Query Frame = 0 

Query: 78  YARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSSTKK-DGREGT 137
           YARAYI+F   ED+  F + FDG+VF++ KG ++ A+VE+AP Q+  +  TKK D + GT
Sbjct: 94  YARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGT 153

Query: 138 IYKDPDYLEFLKLIAKPAEHLPSA-EIQLERKEAE-QSAAAKETPIVTPLMEFVRQK-RA 197
           I  DP+Y +FL+  A   E + S  E  LE  EA+ +   AK+T   TPL+ F++ K R 
Sbjct: 154 IDDDPEYRKFLESYATDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRM 213

Query: 198 VESGTQYILKESVKNTNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIE 257
            E   +   +  ++   +R++        +E++      I     +++    + +    E
Sbjct: 214 REEKREERRRREIERKRQREEER---RKWKEEEKRKRKDIEKLKKIDRIPERDKLKD--E 273

Query: 258 VQGNIAGFLEFEAFVSYVSVTADSGKKKIL--LLKGKERDISHVSDGMLQLQSATSSGTS 317
            +  +  FL        +    + G +K L    K K+ D  ++SD     QS T    S
Sbjct: 274 PKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQSCTLPKRS 333

Query: 318 PASASKHNQRR--EASGSMIRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSIN 377
            +       +R  + SG   R        R  +        ++ ++   +  +R  +   
Sbjct: 334 DSELKDEKPKRPEDESGRDYR-----EREREYERDQERILRERERLKRQEEERRRQKERY 393

Query: 378 ARSGSNDMSSNEPNPSGLEGDGKRPSDGKPSKKELHGLGSLSEKQEK-----RIRNKDRP 437
            +  +      E      E D  R    K    E  G    +EK+E+     RIRNKDRP
Sbjct: 394 EKEKTFKRKEEEMKK---EKDTLRDKGKKAESTESIGSSEKTEKKEEVVKRDRIRNKDRP 453

Query: 438 DRGVWAPRSRSDASVSQLEESSVAQSS 452
              ++ P +RS   +   ++S+ +  S
Sbjct: 454 AMQLYQPGARSRNRLCPPDDSTKSGDS 464

[Close]
BLAST of CmoCh09G013210 vs. ExPASy TrEMBL
Match: A0A6J1EI29 (regulator of nonsense transcripts UPF3-like OS=Cucurbita moschata OX=3662 GN=LOC111432763 PE=3 SV=1)

HSP 1 Score: 825.1 bits (2130), Expect = 1.8e-235
Identity = 461/598 (77.09%), Postives = 465/598 (77.76%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKT              
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTS------------- 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                       QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS
Sbjct: 61  ------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI
Sbjct: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180

Query: 181 VTPLMEFVRQKRAVESGTQ--------------------------------YILKESVKN 240
           VTPLMEFVRQKRAVESGTQ                                YILKESVKN
Sbjct: 181 VTPLMEFVRQKRAVESGTQGSSVPRKVKRGGGASSRKPESNSVKRGMEKKKYILKESVKN 240

Query: 241 TNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFV 300
           TNRRDKSNFILVPRREDQLATSGGIGISD                               
Sbjct: 241 TNRRDKSNFILVPRREDQLATSGGIGISDV------------------------------ 300

Query: 301 SYVSVTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM 360
                TADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM
Sbjct: 301 ----GTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM 360

Query: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE 420
           IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE
Sbjct: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE 420

Query: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480
           GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA
Sbjct: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480

Query: 481 QSSHLLSDSVEDSVSREIITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFY 540
           QSSHLLSDSVE                 AYRGEMKEDIHVSRTGDVTTTVSGR+      
Sbjct: 481 QSSHLLSDSVE-----------------AYRGEMKEDIHVSRTGDVTTTVSGRSSS---- 509

Query: 541 FSFNLKHVVLSLGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEVRFCIHAS 567
                    +  GSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHE +  +  S
Sbjct: 541 ---------VENGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEKQVWVQKS 509

[Close]
BLAST of CmoCh09G013210 vs. ExPASy TrEMBL
Match: A0A6J1IG63 (regulator of nonsense transcripts UPF3-like OS=Cucurbita maxima OX=3661 GN=LOC111472590 PE=3 SV=1)

HSP 1 Score: 813.5 bits (2100), Expect = 5.4e-232
Identity = 455/598 (76.09%), Postives = 459/598 (76.76%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKT              
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTS------------- 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                       QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS
Sbjct: 61  ------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQS AAKETPI
Sbjct: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPI 180

Query: 181 VTPLMEFVRQKRAVESGTQ--------------------------------YILKESVKN 240
           VTPLMEFVRQKRAVESGTQ                                YILKESVKN
Sbjct: 181 VTPLMEFVRQKRAVESGTQGSSLPRKVKRGGGASSRKPESNSAKRGMEKKKYILKESVKN 240

Query: 241 TNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFV 300
           TNRRDKSNFILVPRREDQLATSGGIGISD                               
Sbjct: 241 TNRRDKSNFILVPRREDQLATSGGIGISDV------------------------------ 300

Query: 301 SYVSVTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM 360
                 ADSGKKKILLLKGKERDISHVSDGMLQLQS TS+GTSPASASKHNQRREASGSM
Sbjct: 301 ----GIADSGKKKILLLKGKERDISHVSDGMLQLQSVTSTGTSPASASKHNQRREASGSM 360

Query: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE 420
           IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPN SGLE
Sbjct: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNSSGLE 420

Query: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480
           GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA
Sbjct: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480

Query: 481 QSSHLLSDSVEDSVSREIITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFY 540
           QSSHLLSDSVE                 AYRGEMKEDIHVSRTGDVTTTVSGRN      
Sbjct: 481 QSSHLLSDSVE-----------------AYRGEMKEDIHVSRTGDVTTTVSGRNSS---- 509

Query: 541 FSFNLKHVVLSLGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEVRFCIHAS 567
                    +  GSVRHGGRRGAGHVMKDDGS NPNEGKPSKRGV SGHE +  +  S
Sbjct: 541 ---------VENGSVRHGGRRGAGHVMKDDGSLNPNEGKPSKRGVASGHEKQVWVQKS 509

[Close]
BLAST of CmoCh09G013210 vs. ExPASy TrEMBL
Match: A0A0A0KSY5 (Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=3 SV=1)

HSP 1 Score: 741.1 bits (1912), Expect = 3.4e-210
Identity = 423/598 (70.74%), Postives = 435/598 (72.74%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MKDPLERTKVVIRHLPPSL HSDLFH+I DRFAGR+NW YYRPGKT              
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTS------------- 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                       QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQ+KAVVEYAPS
Sbjct: 61  ------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQS AAKETPI
Sbjct: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPI 180

Query: 181 VTPLMEFVRQKRAVESGTQ--------------------------------YILKESVKN 240
           VTPLMEFVRQKRAVESGTQ                                YILK+SVKN
Sbjct: 181 VTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKN 240

Query: 241 TNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFV 300
           TNRRDKSNFILVPRREDQ ATS  IGISD                               
Sbjct: 241 TNRRDKSNFILVPRREDQSATSSAIGISDV------------------------------ 300

Query: 301 SYVSVTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM 360
                TAD GKKKILLLKGKERDISHVSD MLQLQSATSSG SPASASKHN RREA G +
Sbjct: 301 ----GTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGGV 360

Query: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE 420
           IRSILLNNE+RHGQ+SS A SHQKIQILNSDNGKR PR  NARSGSND+SSNEPNPSG E
Sbjct: 361 IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGSE 420

Query: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480
           GDGKR SD K SKKELHGLGS SEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 
Sbjct: 421 GDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVP 480

Query: 481 QSSHLLSDSVEDSVSREIITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFY 540
           QSSHLLSDSVE                 A+RGEMKEDIH SRTGDVTT VSGRN      
Sbjct: 481 QSSHLLSDSVE-----------------AFRGEMKEDIHGSRTGDVTTIVSGRNSS---- 509

Query: 541 FSFNLKHVVLSLGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEVRFCIHAS 567
                    +  GSVRH GRRGAGHVMKDDGS NPNEGKPSKRGV  GHE +  +  S
Sbjct: 541 ---------VENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKS 509

[Close]
BLAST of CmoCh09G013210 vs. ExPASy TrEMBL
Match: A0A1S3CB69 (regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 738.0 bits (1904), Expect = 2.9e-209
Identity = 421/598 (70.40%), Postives = 434/598 (72.58%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MKDPLERTKVVIRHLPPSL HSDLFH+I DRFAGR+NW YYRPGKT              
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTS------------- 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                       QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQ+KAVVEYAPS
Sbjct: 61  ------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQS AAKETPI
Sbjct: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPI 180

Query: 181 VTPLMEFVRQKRAVESGTQ--------------------------------YILKESVKN 240
           VTPLMEFVRQKRAVESGTQ                                YILK+SVKN
Sbjct: 181 VTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKN 240

Query: 241 TNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFV 300
           TNRRDKSNFILVPRR+DQ A S GIGISD                               
Sbjct: 241 TNRRDKSNFILVPRRDDQSANSSGIGISDV------------------------------ 300

Query: 301 SYVSVTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM 360
                 AD GKKKILLLKGKERDISHVSD MLQLQSATSSG SPASASKHN RREA GS+
Sbjct: 301 ----GAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGSV 360

Query: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE 420
           IRSILLNNE+RHGQ+SS A SHQKIQILNSDNGKR PR  NARSGSND+SSNEPNPSG E
Sbjct: 361 IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGSE 420

Query: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480
           GDGKR  D K SKKELHGLGS SEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV+
Sbjct: 421 GDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVS 480

Query: 481 QSSHLLSDSVEDSVSREIITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFY 540
           QSSHLLSDSVE                 AYRGEMKEDIH SRT DVTT VSGRN      
Sbjct: 481 QSSHLLSDSVE-----------------AYRGEMKEDIHGSRTADVTTIVSGRNSS---- 509

Query: 541 FSFNLKHVVLSLGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEVRFCIHAS 567
                    +  GSVRH GRRGAGHVMKDDGS NPNEGKPSKRGV  GHE +  +  S
Sbjct: 541 ---------VENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKS 509

[Close]
BLAST of CmoCh09G013210 vs. ExPASy TrEMBL
Match: A0A6J1D8M3 (regulator of nonsense transcripts UPF3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018259 PE=3 SV=1)

HSP 1 Score: 731.1 bits (1886), Expect = 3.5e-207
Identity = 411/598 (68.73%), Postives = 435/598 (72.74%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MKDPLERTKVVIRHLPPSLPHSDLFH+IDDRFAGRYNWCYYRPGKT              
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIDDRFAGRYNWCYYRPGKTS------------- 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                       QKDQRY+RAYIDFTRPEDVFEFAEFFDGHVFVNEKG Q+KAV+EYAPS
Sbjct: 61  ------------QKDQRYSRAYIDFTRPEDVFEFAEFFDGHVFVNEKGTQYKAVIEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVPRSSTKKDGR+GTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQS  AKETPI
Sbjct: 121 QRVPRSSTKKDGRDGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGVAKETPI 180

Query: 181 VTPLMEFVRQKRAVESGTQ--------------------------------YILKESVKN 240
           VTPLMEFVRQKRAVESGTQ                                YILK+SVKN
Sbjct: 181 VTPLMEFVRQKRAVESGTQGSSVSRKVKRGGGASSRKPESNSMKRGMEKKKYILKDSVKN 240

Query: 241 TNRRDKSNFILVPRREDQLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFV 300
           TNRRDKSNFILVPRR+DQ ATS GIGISD                               
Sbjct: 241 TNRRDKSNFILVPRRDDQPATSSGIGISDV------------------------------ 300

Query: 301 SYVSVTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSM 360
                TADSGKKKILLLKGKERDISHV+DGML LQSA+SSG SP +A+K NQRREASGS+
Sbjct: 301 ----TTADSGKKKILLLKGKERDISHVADGMLHLQSASSSGNSPTTATKQNQRREASGSL 360

Query: 361 IRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLE 420
           IRSILLNNE RHGQ SS + SHQKIQILNSDNGKR PR INARSGSNDMS+NEPNPSG E
Sbjct: 361 IRSILLNNEPRHGQGSSVSQSHQKIQILNSDNGKRPPRPINARSGSNDMSNNEPNPSGSE 420

Query: 421 GDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVA 480
           GDGKR  + K SKKELHGLGS SEKQEKRIRNKDRPDRGVWAPRSRSDA VSQL+ESS++
Sbjct: 421 GDGKRAPESKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDALVSQLDESSIS 480

Query: 481 QSSHLLSDSVEDSVSREIITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFY 540
           QSSHLLSDSVE                 A+R EMK+DIH SRTGDVTTTVSGR       
Sbjct: 481 QSSHLLSDSVE-----------------AFRVEMKDDIHGSRTGDVTTTVSGRGSS---- 509

Query: 541 FSFNLKHVVLSLGSVRHGGRRGAGHVMKDDGSSNPNEGKPSKRGVVSGHEVRFCIHAS 567
                    +  GSVRH GRRGAGHVMKDDGS NPNEGK SKRG+  GHE +  +  S
Sbjct: 541 ---------VENGSVRHVGRRGAGHVMKDDGSLNPNEGKSSKRGLAGGHEKQVWVQKS 509

[Close]
BLAST of CmoCh09G013210 vs. TAIR 10
Match: AT1G33980.2 (Smg-4/UPF3 family protein )

HSP 1 Score: 326.2 bits (835), Expect = 5.1e-89
Identity = 223/571 (39.05%), Postives = 299/571 (52.36%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MK+PL++ KVV+RHLPPSL  SDL   ID RFA RYNW  +RPGK+R             
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSR------------- 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
           +GY          K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQFKA+VEYAPS
Sbjct: 61  LGY----------KNQKYSRAYVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVP+ S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQS A+K  PI
Sbjct: 121 QRVPKPSDKKDPREGSISKDPDYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPI 180

Query: 181 VTPLMEFVRQKRAVESGTQYIL---------------KESVKNTNRRDKSNFILVPRRED 240
           VTPLMEF+RQKRA   G Q +                K S + + R  +    +      
Sbjct: 181 VTPLMEFIRQKRATVMGPQGLSDIRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSK 240

Query: 241 QLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFVSYVSVTADSGKKKILLL 300
            +       +S +   Y  SNS     E+ GN    +  ++    +++T DSGKKKILLL
Sbjct: 241 NVPRKTTADVSSSKPDYRQSNSSGK--ELPGNETAAI-IDSSPPGIALTMDSGKKKILLL 300

Query: 301 KGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSMIRSILLNNESRHGQTSS 360
           + K+RD         + Q   ++ +  ++ S+ NQ+ +  G +I+ ILL N+SR  Q+S+
Sbjct: 301 RSKDRDNPDNPPPQPE-QHIDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSST 360

Query: 361 GAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLEGDGKRPSDGKPSKKELH 420
              S Q+++   ++N KR  R  N R+G                            K+ H
Sbjct: 361 FVQSEQRVEPSEAENYKRPSRPANTRAG----------------------------KDYH 420

Query: 421 GLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVAQSSHLLSDSVEDSVSRE 480
             G++SEKQE+R RNKDRPDR +WAP  R D S  Q   S+                   
Sbjct: 421 TSGTISEKQERRTRNKDRPDRVMWAP--RRDGSEDQPLSSA------------------- 467

Query: 481 IITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFYFSFNLKHVVLSLGSVRH 540
                         GE+K+ +   R+G+V  +  G   ++               GS RH
Sbjct: 481 -----------GNNGEVKDRMFSQRSGEVVNSSGGHTLEN---------------GSARH 467

Query: 541 GGRRGAGHVMKDDGSSNPNEGKPSKRGVVSG 557
             RR  G   K++      EGK S+RG   G
Sbjct: 541 SSRRVGGRNRKEEVVI--GEGKTSRRGSGGG 467

[Close]
BLAST of CmoCh09G013210 vs. TAIR 10
Match: AT1G33980.1 (Smg-4/UPF3 family protein )

HSP 1 Score: 322.8 bits (826), Expect = 5.6e-88
Identity = 220/571 (38.53%), Postives = 296/571 (51.84%), Query Frame = 0 

Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTRFAPFLLLLLLLLL 60
           MK+PL++ KVV+RHLPPSL  SDL   ID RFA RYNW  +RPGK+ +            
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSY------------ 60

Query: 61  VGYWGGLVIRIIQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPS 120
                        K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQFKA+VEYAPS
Sbjct: 61  -------------KNQKYSRAYVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPS 120

Query: 121 QRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPI 180
           QRVP+ S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQS A+K  PI
Sbjct: 121 QRVPKPSDKKDPREGSISKDPDYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPI 180

Query: 181 VTPLMEFVRQKRAVESGTQYIL---------------KESVKNTNRRDKSNFILVPRRED 240
           VTPLMEF+RQKRA   G Q +                K S + + R  +    +      
Sbjct: 181 VTPLMEFIRQKRATVMGPQGLSDIRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSK 240

Query: 241 QLATSGGIGISDAVEKYYLSNSVFHVIEVQGNIAGFLEFEAFVSYVSVTADSGKKKILLL 300
            +       +S +   Y  SNS     E+ GN    +  ++    +++T DSGKKKILLL
Sbjct: 241 NVPRKTTADVSSSKPDYRQSNSSGK--ELPGNETAAI-IDSSPPGIALTMDSGKKKILLL 300

Query: 301 KGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGSMIRSILLNNESRHGQTSS 360
           + K+RD         + Q   ++ +  ++ S+ NQ+ +  G +I+ ILL N+SR  Q+S+
Sbjct: 301 RSKDRDNPDNPPPQPE-QHIDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSST 360

Query: 361 GAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGLEGDGKRPSDGKPSKKELH 420
              S Q+++   ++N KR  R  N R+G                            K+ H
Sbjct: 361 FVQSEQRVEPSEAENYKRPSRPANTRAG----------------------------KDYH 420

Query: 421 GLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVAQSSHLLSDSVEDSVSRE 480
             G++SEKQE+R RNKDRPDR +WAP  R D S  Q   S+                   
Sbjct: 421 TSGTISEKQERRTRNKDRPDRVMWAP--RRDGSEDQPLSSA------------------- 465

Query: 481 IITQYIFYAFTAYRGEMKEDIHVSRTGDVTTTVSGRNFKSTFYFSFNLKHVVLSLGSVRH 540
                         GE+K+ +   R+G+V  +  G   ++               GS RH
Sbjct: 481 -----------GNNGEVKDRMFSQRSGEVVNSSGGHTLEN---------------GSARH 465

Query: 541 GGRRGAGHVMKDDGSSNPNEGKPSKRGVVSG 557
             RR  G   K++      EGK S+RG   G
Sbjct: 541 SSRRVGGRNRKEEVVI--GEGKTSRRGSGGG 465

The following BLAST results are available for this feature:
BLAST of CmoCh09G013210 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FVW47.9e-8738.53Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P... [more]
B0S7331.4e-1438.13Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2[more]
Q9H1J14.4e-1334.53Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1[more]
Q102671.6e-1024.88Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 ... [more]
Q9BZI77.8e-1025.84Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1[more]
BLAST of CmoCh09G013210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EI291.8e-23577.09regulator of nonsense transcripts UPF3-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1IG635.4e-23276.09regulator of nonsense transcripts UPF3-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A0A0KSY53.4e-21070.74Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 P... [more]
A0A1S3CB692.9e-20970.40regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1D8M33.5e-20768.73regulator of nonsense transcripts UPF3 isoform X1 OS=Momordica charantia OX=3673... [more]
BLAST of CmoCh09G013210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G33980.25.1e-8939.05Smg-4/UPF3 family protein [more]
AT1G33980.15.6e-8838.53Smg-4/UPF3 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 70..193
e-value: 8.3E-36
score: 123.6
coord: 6..46
e-value: 4.0E-8
score: 33.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..122
e-value: 1.2E-28
score: 101.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 434..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 528..553
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 391..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..455
NoneNo IPR availablePANTHERPTHR13112:SF5REGULATOR OF NONSENSE TRANSCRIPTS UPF3coord: 1..199
coord: 199..558
NoneNo IPR availableCDDcd12455RRM_like_Smg4_UPF3coord: 9..119
e-value: 7.65275E-29
score: 107.724
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 1..199
coord: 199..558
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 73..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G013210.1CmoCh09G013210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process GO:0045727 positive regulation of translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005730 nucleolus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding