CmoCh09G012880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G012880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UPF0481 protein At3g47200-like
Location	Cmo_Chr09: 11435659 .. 11436021 (+)
RNA-Seq Expression	CmoCh09G012880
Synteny	CmoCh09G012880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG

mRNA sequence

ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG

Coding sequence (CDS)

ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG

Protein sequence

MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWC

Homology

[Close]

BLAST of CmoCh09G012880 vs. ExPASy Swiss-Prot
Match: Q9SD53 (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 26/78 (33.33%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 40  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF---ERRCGLCVED 99
           I+R+P+    ++PKA+KPK VS GPYH+GE HL  +++ K   L+ F    ++  +    
Sbjct: 48  IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107

Query: 100 IVNELWDMLEDLQRSYDK 115
           +V  + D+ + +++SY +
Sbjct: 108 LVKAVVDLEDKIRKSYSE 125

[Close]

BLAST of CmoCh09G012880 vs. ExPASy TrEMBL
Match: A0A6J1EBQ1 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432742 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.6e-63
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRV 60
           MELSRLHNKDALVEIITQNLNSHLENLPDDLERK NGASIYRIPDHIKKVHPKAFKPKRV
Sbjct: 1   MELSRLHNKDALVEIITQNLNSHLENLPDDLERKDNGASIYRIPDHIKKVHPKAFKPKRV 60

Query: 61  SFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           SFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW
Sbjct: 61  SFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 119

[Close]

BLAST of CmoCh09G012880 vs. ExPASy TrEMBL
Match: A0A6J1EC69 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432744 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRV 60
           ME SR  NKDA+VEI+TQN+ SHL NLPDDLE K N ASIYRIP+HIKKV+P AFKP+ +
Sbjct: 1   MEQSRPRNKDAVVEIVTQNVKSHLANLPDDLESKGNRASIYRIPEHIKKVNPNAFKPQLI 60

Query: 61  SFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           SFGPYHHGELHL P EK+KHLA RYFE+RCGL +ED+VNE+WDMLEDLQRSYDKLDD+W
Sbjct: 61  SFGPYHHGELHLMPTEKVKHLAFRYFEKRCGLSIEDMVNEVWDMLEDLQRSYDKLDDKW 119

[Close]

BLAST of CmoCh09G012880 vs. ExPASy TrEMBL
Match: A0A6J1EF72 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432743 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 87/130 (66.92%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 1   MELSRLHNKD-----------ALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKK 60
           MELS   NKD           A+VE IT+NL   LE+LPD  +RK NGASIYRIP+HIKK
Sbjct: 1   MELSSSRNKDTVVVELSPLQNAVVE-ITENLKVQLEDLPDYRKRKINGASIYRIPEHIKK 60

Query: 61  VHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQ 120
           V+P AFKP+ VSFGPYHHGE HL PMEK K LA++ FERRCGL  ED+V ELWDMLEDLQ
Sbjct: 61  VNPNAFKPQHVSFGPYHHGEPHLLPMEKKKRLAVQDFERRCGLSTEDMVTELWDMLEDLQ 120

[Close]

BLAST of CmoCh09G012880 vs. ExPASy TrEMBL
Match: A0A6J1ECA1 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432765 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRV 60
           ME+  LH+K  +V I TQNL+SHLEN    +  K  GASIYRIPD+I KV+P AFKP+ V
Sbjct: 1   MEMPPLHDKHTMVRITTQNLDSHLENHYVGVRSKGIGASIYRIPDYIMKVNPNAFKPQLV 60

Query: 61  SFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           SFGPYHHGELHL PMEK KHL    F+R  GLC EDIVNE+WDMLEDLQ SYDKL DEW
Sbjct: 61  SFGPYHHGELHLLPMEKEKHLIFEDFKRCYGLCTEDIVNEVWDMLEDLQGSYDKLHDEW 119

[Close]

BLAST of CmoCh09G012880 vs. ExPASy TrEMBL
Match: A0A6J1EI01 (putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111432745 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.1e-37
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRV 60
           MELS L+ +      + Q+L SHL N+ DDLE K+NGASIYRIP+HIKKV+P AFKP+ +
Sbjct: 1   MELSPLYYR------VVQSLESHLSNVDDDLESKSNGASIYRIPEHIKKVNPNAFKPRLI 60

Query: 61  SFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           SFGPYHH + HL P+EK KHLAL  F+RRCGL  EDIV+EL+ MLEDLQRSYDKLDD+W
Sbjct: 61  SFGPYHHRDAHLLPLEKKKHLALYNFKRRCGLSTEDIVSELFIMLEDLQRSYDKLDDKW 113

[Close]

BLAST of CmoCh09G012880 vs. TAIR 10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 63.9 bits (154), Expect = 9.9e-11
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 8   NKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHH 67
           N+  L EI   +LN  ++ L D+     +   IYR+P ++++   K++ P+ VS GPYHH
Sbjct: 74  NEQKLREIWVISLNDKMKTLGDNATTSWDNLCIYRVPPYLQENDTKSYMPQIVSIGPYHH 133

Query: 68  GELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSY 113
           G  HL PME+ K  A+     R    +E  ++ + ++ E  +  Y
Sbjct: 134 GHKHLMPMERHKWRAVNMVMARAKHDIEMYIDAMKELEEKARACY 178

[Close]

BLAST of CmoCh09G012880 vs. TAIR 10
Match: AT3G47210.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09
Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 40  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVN 99
           I+R+P    +++P+A+KPK VS GPYHHG  HL  +++ K   L  F R   +  + + N
Sbjct: 95  IFRVPKSFAEMNPEAYKPKVVSIGPYHHGRKHLEMIQQHKLRFLHLFLRTASVDRDVLFN 154

Query: 100 ELWDMLEDLQRSYDK 115
            + D  +++++SY +
Sbjct: 155 AVVDWEDEIRKSYSE 169

[Close]

BLAST of CmoCh09G012880 vs. TAIR 10
Match: AT3G47250.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 5   RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSF 64
           R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS 
Sbjct: 28  RQRSERSVVSHIKRNLQS--SGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSI 87

Query: 65  GPYHHGELHLSPMEKMKHLALRYFERR 90
           GPYH+GE HL  +++ K   L  F  R
Sbjct: 88  GPYHYGENHLQMIQQHKFRFLELFVDR 112

[Close]

BLAST of CmoCh09G012880 vs. TAIR 10
Match: AT3G47250.2 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 5   RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSF 64
           R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS 
Sbjct: 28  RQRSERSVVSHIKRNLQS--SGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSI 87

Query: 65  GPYHHGELHLSPMEKMKHLALRYFERR 90
           GPYH+GE HL  +++ K   L  F  R
Sbjct: 88  GPYHYGENHLQMIQQHKFRFLELFVDR 112

[Close]

BLAST of CmoCh09G012880 vs. TAIR 10
Match: AT3G47250.3 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 5   RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSF 64
           R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS 
Sbjct: 28  RQRSERSVVSHIKRNLQS--SGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSI 87

Query: 65  GPYHHGELHLSPMEKMKHLALRYFERR 90
           GPYH+GE HL  +++ K   L  F  R
Sbjct: 88  GPYHYGENHLQMIQQHKFRFLELFVDR 112

The following BLAST results are available for this feature:

BLAST of CmoCh09G012880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD53	1.9e-06	33.33	UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1	[more]

BLAST of CmoCh09G012880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBQ1	8.6e-63	99.16	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432742 PE=...	[more]
A0A6J1EC69	1.6e-48	77.31	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432744 PE=...	[more]
A0A6J1EF72	1.5e-38	66.92	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432743 PE=...	[more]
A0A6J1ECA1	1.3e-37	68.07	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111432765 PE=...	[more]
A0A6J1EI01	8.1e-37	66.39	putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111432745...	[more]

BLAST of CmoCh09G012880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50160.1	9.9e-11	31.43	Plant protein of unknown function (DUF247)	[more]
AT3G47210.1	4.2e-09	34.67	Plant protein of unknown function (DUF247)	[more]
AT3G47250.1	4.2e-09	42.53	Plant protein of unknown function (DUF247)	[more]
AT3G47250.2	4.2e-09	42.53	Plant protein of unknown function (DUF247)	[more]
AT3G47250.3	4.2e-09	42.53	Plant protein of unknown function (DUF247)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 40..116 e-value: 5.6E-17 score: 62.1
IPR004158	Protein of unknown function DUF247, plant	PANTHER	PTHR31549	PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED	coord: 35..114
None	No IPR available	PANTHER	PTHR31549:SF103	UPF0481 PROTEIN	coord: 35..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012880.1	CmoCh09G012880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane