CmoCh09G012750 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G012750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S9-2-like
Location	Cmo_Chr09: 11163519 .. 11165642 (+)
RNA-Seq Expression	CmoCh09G012750
Synteny	CmoCh09G012750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCTCTTACTCTCTTTTGCTTCTTCAGCTACTTCTCTTCCCTCTCTGTGGCATTCAAGATCATTCTGTAAGTGAAGCCGTTGCAGAGAAGGGATCATGGTGCACGTCTCCTTCTATAGGAACTGTAAGCATGAATCTCTTACTTTTCCTTGAATGATTTTGTTTTCATTCTCAATTTTCCAACTTCCGTTTCTCTAGTGCTTTTCTTGTTCGTAATTTCTTCATTGGACTCTCCGATTGTGTTTCGCACATGTTTTGCTGCTTTTTTGATCGGTATTGCTGGAAATTTCCAAGGATTTAAATGTTTTAAATGATTTTTACAGCTCCTTTTGAGCTGCTGATGTAAGTATCACTTGATGTAGAATCGGTGACGTTGGATTTAAGGGAATATGATGCTCGATAATAATCTCTTAGGGTTTTTTTTTTTTCTTTTTTGAAATTTTGTTCTTTGCATCTTATGGAGATTAAGAAATGGCGTAGTTCGTCTTTCGCAAAAACTTCAGAAAATAAACGATGCTTCTTCTTGGTGTTTTTATTTAGAGCTAAGATAATTGATGTGTGGGTTTTATCTGTATGTAGATGGGAAGACATTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTCTGGATGCCGAGTTGAAATTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTATGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGTATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATATTTGAGGGAGAGGCTCTTCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCTATCCATCATGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGTAGTATGCCTTCATTATCCTTTTCCATACCCATAACATTCTTTATTCTTCCATTAGCTATTTTGATTACTTTTCGTTGTTTTGTAAAATTCTTAGTGCTTGATGATCAACTCTTACAGATATCATATTTATTTTCTGAGAATTGAATGTTGCTATGCTGCTTTCGTTTAGATATAACACATAAAATTCTTTGGGAAAGAGCCAAAAGCACTCGCAAGCCAAAACTGCATAACTCCACATATTTTGTTTTTTACTTAAATGTTGGAAGTTCAAATCCTCACTAGAAAAAGGTTTTTAGCTACATATTTGTGGATCACTTTTAGCTCAAGTGATGATGATCTAAAAGAATTTTAAAGACTTGAGAAGTGTAGAGTCACTTCAATGTCGTTTTTTTTAGTTAATTAAGTTCTTATACATTGATATATGTATATGTAAAGTACTGGACATTAATACGAAGTTCTTATACGTTGATATATGTTTGTTGGATGTAAAGTACTGGACATTAATAATTTCATCTGTCACATTTTATCCTTAGGGTCGGAAGGCAGGTGGTCAACATCCCTTCTTTCATGGTGCGGGTCGATTCCCAGAAGCACATAGACTTCTCACTCACGAGTCCGTTTGGAGGTGGCCGTCCTGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGCGACGGTGATGAAGAAGACGAGGATTGAGTTATTGACGAAAAAAATGATTATCCGAGATGAAAATGATTAGCTGAGGATCTCAGGTACTGAGATCAGCCTCAATCTATAAACCTTATCTATCACTATATTTGAAAGAGAATGTTACCTCCTTTTAGAAGTTTTGCTTTAAATATTTTGGAATTAGAGAACTTGTTTGTTTTTTTTTGGTTATGGCGGCGACTTGATCATAACCTATTTGGTTTTTTAAGTTGTCACAGTTTTCATTAATCGATACTTGATCATGTGAAGGACTCACTTTTTTCCTAAACATTTTTATGCACTATGAATTATTTTAGTTCATTTGATCCATTGATAGGCTTTGTAATTCTAAGGCTCATGAGTTCTTGAATTCTTATTAAAGATGTACAAGAGCTTCATAAAAGGGTATAGGGATGTGACCTGATAAATTTTCAATTCAAGTAGATTTCGATG

mRNA sequence

CTGCTCTTACTCTCTTTTGCTTCTTCAGCTACTTCTCTTCCCTCTCTGTGGCATTCAAGATCATTCTGTAAGTGAAGCCGTTGCAGAGAAGGGATCATGGTGCACGTCTCCTTCTATAGGAACTATGGGAAGACATTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTCTGGATGCCGAGTTGAAATTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTATGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGTATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATATTTGAGGGAGAGGCTCTTCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCTATCCATCATGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTCGGAAGGCAGGTGGTCAACATCCCTTCTTTCATGGTGCGGGTCGATTCCCAGAAGCACATAGACTTCTCACTCACGAGTCCGTTTGGAGGTGGCCGTCCTGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGCGACGGTGATGAAGAAGACGAGGATTGAGTTATTGACGAAAAAAATGATTATCCGAGATGAAAATGATTAGCTGAGGATCTCAGGTACTGAGATCAGCCTCAATCTATAAACCTTATCTATCACTATATTTGAAAGAGAATGTTACCTCCTTTTAGAAGTTTTGCTTTAAATATTTTGGAATTAGAGAACTTGTTTGTTTTTTTTTGGTTATGGCGGCGACTTGATCATAACCTATTTGGTTTTTTAAGTTGTCACAGTTTTCATTAATCGATACTTGATCATGTGAAGGACTCACTTTTTTCCTAAACATTTTTATGCACTATGAATTATTTTAGTTCATTTGATCCATTGATAGGCTTTGTAATTCTAAGGCTCATGAGTTCTTGAATTCTTATTAAAGATGTACAAGAGCTTCATAAAAGGGTATAGGGATGTGACCTGATAAATTTTCAATTCAAGTAGATTTCGATG

Coding sequence (CDS)

ATGGTGCACGTCTCCTTCTATAGGAACTATGGGAAGACATTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTCTGGATGCCGAGTTGAAATTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTATGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGTATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATATTTGAGGGAGAGGCTCTTCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCTATCCATCATGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTCGGAAGGCAGGTGGTCAACATCCCTTCTTTCATGGTGCGGGTCGATTCCCAGAAGCACATAGACTTCTCACTCACGAGTCCGTTTGGAGGTGGCCGTCCTGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGCGACGGTGATGAAGAAGACGAGGATTGA

Protein sequence

MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED

Homology

[Close]

BLAST of CmoCh09G012750 vs. ExPASy Swiss-Prot
Match: Q9FLF0 (40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.6e-98
Identity = 179/197 (90.86%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEDED 198
           A AKKA+GGDGDE+DE+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of CmoCh09G012750 vs. ExPASy Swiss-Prot
Match: Q9LXG1 (40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.7e-93
Identity = 172/198 (86.87%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEED 196
           +A+KKA+GG   DGD+E+
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of CmoCh09G012750 vs. ExPASy Swiss-Prot
Match: P52810 (40S ribosomal protein S9 OS=Podospora anserina OX=2587412 GN=RPS9 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.0e-71
Identity = 140/191 (73.30%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 8   RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEK 67
           R+Y KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK
Sbjct: 4   RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63

Query: 68  NPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 127
           +P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHA
Sbjct: 64  DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123

Query: 128 RVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAA 187
           RVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK     AK A 
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAE 183

Query: 188 GGDGD-EEDED 198
           GGDGD EEDE+
Sbjct: 184 GGDGDAEEDEE 190

[Close]

BLAST of CmoCh09G012750 vs. ExPASy Swiss-Prot
Match: A6QLG5 (40S ribosomal protein S9 OS=Bos taurus OX=9913 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.5e-69
Identity = 132/184 (71.74%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 132 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 191
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 192 DEED 196
           +EED
Sbjct: 191 EEED 194

[Close]

BLAST of CmoCh09G012750 vs. ExPASy Swiss-Prot
Match: P46781 (40S ribosomal protein S9 OS=Homo sapiens OX=9606 GN=RPS9 PE=1 SV=3)

HSP 1 Score: 261.5 bits (667), Expect = 7.5e-69
Identity = 132/184 (71.74%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 132 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 191
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 192 DEED 196
           +EED
Sbjct: 191 EEED 194

[Close]

BLAST of CmoCh09G012750 vs. ExPASy TrEMBL
Match: A0A6J1JAT4 (40S ribosomal protein S9-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485110 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. ExPASy TrEMBL
Match: A0A0A0KSN1 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. ExPASy TrEMBL
Match: A0A1S3CA34 (40S ribosomal protein S9-2 OS=Cucumis melo OX=3656 GN=LOC103498678 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. ExPASy TrEMBL
Match: A0A6J1EC07 (40S ribosomal protein S9-2-like OS=Cucurbita moschata OX=3662 GN=LOC111432674 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. ExPASy TrEMBL
Match: A0A5D3BMY4 (40S ribosomal protein S9-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00750 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-99
Identity = 179/197 (90.86%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEDED 198
           A AKKA+GGDGDE+DE+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of CmoCh09G012750 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 340.9 bits (873), Expect = 6.9e-94
Identity = 172/198 (86.87%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEED 196
           +A+KKA+GG   DGD+E+
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of CmoCh09G012750 vs. TAIR 10
Match: AT5G15200.2 (Ribosomal protein S4 )

HSP 1 Score: 249.2 bits (635), Expect = 2.7e-66
Identity = 125/137 (91.24%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIR 138
           AKSIHH+RVLIRQ+HIR
Sbjct: 121 AKSIHHSRVLIRQRHIR 137

[Close]

BLAST of CmoCh09G012750 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04
Identity = 29/130 (22.31%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLR 80
           +++E    E ++   Y +  + +  +       ++    ++  +D  +P RI   + LL 
Sbjct: 20  WKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLE 79

Query: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGR 140
           ++   G++  ++  L     L+V +F  RRL T++     A+    A   I Q H+RVG 
Sbjct: 80  KLYNMGVI-PTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGP 139

Query: 141 QVVNIPSFMV 151
           + +  P+F+V
Sbjct: 140 ETITDPAFLV 148

The following BLAST results are available for this feature:

BLAST of CmoCh09G012750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLF0	2.6e-98	90.86	40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1	[more]
Q9LXG1	9.7e-93	86.87	40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1	[more]
P52810	8.0e-71	73.30	40S ribosomal protein S9 OS=Podospora anserina OX=2587412 GN=RPS9 PE=3 SV=1	[more]
A6QLG5	7.5e-69	71.74	40S ribosomal protein S9 OS=Bos taurus OX=9913 GN=RPS9 PE=2 SV=1	[more]
P46781	7.5e-69	71.74	40S ribosomal protein S9 OS=Homo sapiens OX=9606 GN=RPS9 PE=1 SV=3	[more]

BLAST of CmoCh09G012750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAT4	7.4e-104	100.00	40S ribosomal protein S9-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485110 PE=3...	[more]
A0A0A0KSN1	7.4e-104	100.00	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604...	[more]
A0A1S3CA34	7.4e-104	100.00	40S ribosomal protein S9-2 OS=Cucumis melo OX=3656 GN=LOC103498678 PE=3 SV=1	[more]
A0A6J1EC07	7.4e-104	100.00	40S ribosomal protein S9-2-like OS=Cucurbita moschata OX=3662 GN=LOC111432674 PE...	[more]
A0A5D3BMY4	7.4e-104	100.00	40S ribosomal protein S9-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of CmoCh09G012750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39850.1	1.9e-99	90.86	Ribosomal protein S4	[more]
AT5G15200.1	6.9e-94	86.87	Ribosomal protein S4	[more]
AT5G15200.2	2.7e-66	91.24	Ribosomal protein S4	[more]
AT5G15750.1	5.1e-04	22.31	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 8..108 e-value: 6.8E-25 score: 98.7
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 15..64 e-value: 1.9E-6 score: 28.7
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 109..180 e-value: 2.0E-5 score: 34.0
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 109..152 e-value: 3.4E-13 score: 49.1
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 109..153 e-value: 4.89878E-9 score: 49.1702
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 108..166 e-value: 2.0E-14 score: 55.6
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAM	TIGR01018	TIGR01018	coord: 11..166 e-value: 1.9E-64 score: 214.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..197
None	No IPR available	PANTHER	PTHR11831:SF34	40S RIBOSOMAL PROTEIN S9-2-LIKE	coord: 5..197
None	No IPR available	PROSITE	PS50889	S4	coord: 109..180 score: 11.141525
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 12..159
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 5..197
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 107..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012750.1	CmoCh09G012750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045903	positive regulation of translational fidelity
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding