CmoCh09G012410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G012410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Guanine nucleotide-binding protein, beta subunit
Location	Cmo_Chr09: 10664889 .. 10671245 (+)
RNA-Seq Expression	CmoCh09G012410
Synteny	CmoCh09G012410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAACCTCTCCCTAACACACGCGTTTCAATGCTTGCTCTTACCGGTTCAAAAGATGGTTCTGTTCATATTGTGAACATATCGACTGGAAAGGTTATTTCTACTATTTCTTTCGATGATATTCTCGTTTTTTAGCGGAGTAAAGGGGGTTGTTCGGGGCGTTCTTCCCAGTGAATAACCCATCCTTTTCTTTCATGTCTCGAGTTGATTGGAATAGTTTATGCCACATTTTGAATCTCTGTTGGTTTGAATGACTTTGATTGAGCAACTAGACTGTACATTACATAACTATTGAGAAGAATTAAGGTTAAGTGTGAGATCCCGATTGATTGGAGATGAGAACGAATAATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATGTGTTTTAAAAATCTTGAGGGGAAGCTCGAAAGGAAAGGCCAAAAGAAAACAATATCTGCTAGTGGTGGGCTTGGGCTGTTACAAATGATATCAGAGCCAGACACCGGCTAGTGTGCTAGCGAGGACGCTGGACCTCGAAGGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACGAGTGTGAGTGAGGATGCTGAGCCCCAAAGGGAGTAGATTGTGAGATCCCACGTCAATTGGAGAAGGGAACGAATCGTTCTTTATAAGGGGTGGAAACCTCTCCCTAGCTGACGCGTTTTAAAAACATTGAGGGAAAGCCCAAAAGAAAAAATCCAAAGAAGCAATATCTGCTAGCGGTGGGCTTGAGTCGTTATATTAAGTTAGTACAGTTGGTAAATAGTTAACGGTTAGGTTGGAAGTTGTAAAAAGGAGGGTTTTATGTGTTAGTTTTTATAGGAGCAGAAGAGACCTAGCATCTTGTGTCCTTTACTGAACTTCATTTGGTTATTTGACCTGAATTGTATGATAAATGCACAGTTGCAGCCCTGTTGGGTTGGCCTATCGCATTTGCTTGTAATGCTAAATGTTGAAGGCAGTTGTTCTCTAGGACCATTCTAGGACTATTTGAGGTCTGGACATGTAACAGCCAAGCCTGAGTTCATCGCTAGCAAATATTGTTCCTCTTTAGGCTTTCCCTCAAGGTTTTTAAAACGTGTCTGTCAAAGTTTTTAAAACGCTTCTGTCAAGGTTTTTAAAACGCGTATGTTAAGGATGTGAGTTCATAAGCTTGACTTAGTAAAAGAAGTTATTAACCTAGAGTAATTTTAGGAAAATTGAGTAGTTATTGATTTGAAAGTTTATGAGGAAGTTTAAGAGATCGGTTGTGCAATCTTCACTATAAATACTCATGAGATGTATGTTATTTCAACAAAAAAAAAAGAATTAATAAAGCATAAGTGCTTAAGGTTCCTCTATTCAAGAGCTCTCTCCCCTCAGGTTGTTCTTCCGCTTCAGTTATTTGTTCCGACATATTTCAATCGTGGGCAATTTCCAACAAGAGAGAGGTTTCCATACCCTTATAAAAAATGTTTTGTTCTCCCATCCAACCGATGCGAGATCTCACAATCCACACCCTTTTAGGACCTAGCAATCGGGCTTAGCGTCCTCGCTGGCACACATTTTGGTGTCTAGCTCTGATACCATTTGTAACCGCTCAAGTCCACCGCTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTCCAGGCTTCCCCTCAAGGTTTTAAAACGAGTCTGCTAGGGAGAGGTTTCCACACTCTTATAAATAATGTTTCATTCTCCAACCCAACCGATGTGGGATCTTACAATTCACCCCTCTTCAGGTCCCAGCATCCTCGGCGGCACACTGCCTTGTGTCCACCTTCCTTCGGGGCTCAGTCTCCTCACTGGCATATCCCCCGGTGTCTAGCTCTGATATCATTTGTAACAGCCTAAGCCCACTGCTAGCAGATATTGTTCTCTTTGGGTTTTCCCTTTCGAATTCCCCCTCAAAGTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACATTCTTATAAAGAAGGTTTTGTTCTCCTCCCAACCAATGTGGGATCTGTTGGAAATTGCCTACAATCAAAATATGTCGAAACAAATTACTGAAACGGAAGAACAACTTGAGGGGAGAGAGCTTTTGAATAAAAGAACCTTGAGCACTTATGCTTATCAATTCTCTTTTGTTGTTGTGAAAATAACATACATCTCATGAGTTTTTATAGTGGAGAAAGTACAATCGATCTTCTAAACTTCTCTCAAGTTCCTAAACTTTCTTTTTAAGTTAAGCAACTACTAACAAATATTCGTAATTAAAGATAACAATTTCCCTAAACTTATTCAAATCAATAACACTACTAAATAATTATCTTAAAATTGCTCTAGGTTAATAATTTCTTTTTGATAAGTCAAGCATATTAACTCACGAGACATTCATAATTATTAGAAAAAAGAAAACTTCAACACTATTTTCTTCAGTGCATGTGAATTTCTGATGTTTCAATGTACGGTGCAATGGATAGATTGAAATGAAGATGTGATGTCCTACATCGTTTGGGGAGGAGAACAAAACACCCTTTATAACGGGGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAGCCTTGAGAGGAAACCCAAAAGGAAAAAAACCCAAAGAGGATAATATCTGCTAGCGGTGGGCCTGGACCGTTACAAATGGTATCAAAACCAGACACCGGGTGATGTGCCAGCGAGGAGGCCATTCCCCGAATGGGGTAGAACGAGGCGGTGTGTCAGTAAGGATGTTGGGCCCCAAAGGAGGGTGGATTTGGTAGGGGTCTCACATTGATTGGAGAAATGAACGAGTGCCAGCGAGGACGCTGGGCCCTGAAGGAGGGTGGATTGTGATGTCCCACATCGGTTGGGGAGGAGAATGAAACACTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCTAAAGAGTACAATATCTGCTAGCGGTGGGCCTAGCTCTTATAGAAGACCCTTATTTTAGGGATTGAAACTGTTTTTTATTCAAGTTAGTTGCTTGTATTAGGGATTGAAACTGTTTTTTATTCAAGTTAGTTGCTTGTATCTGGTGTAAGCTGTAATTTTTATGGCCCTGGACTTCTATTTTGTAGTCTACTTTCTCATAAAAGAAAAAATGAAGACGCTCCTTTTGACAGGTCGTTAATTCTCTGGTTTCTCATTCAAATTCAATCGAGTGCATCGGTCTAGCGCCAAGGTACTGTGGTTAATTATGATTCATGAAACTTTGTTAAAAATGTTCTTAGGAATCACGGACCTTCACAATGGTATGATATTGTCCACTGAGTATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCACCAATAGAGATGTATTCCTTACTTATAAACCCATGATCATTTCCTAAATTAGCCAATGTGGGACTCCCTCCCATTAATCCTCAACAATCCTTCCCTCGAACAAAGTACACTATAGAGCCTCTCATGAGGCTTATGGAGCCCTCGAACAGTCTCCCCATAATCAAGGCTCAACTCCTTCTCTGGTGTCCTCGAACAAAGTACACCCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGGTTCACAACTTCTTTGTTCGACATTTGGGGATTCTATTGACATAACTAAGTTAAGGACAGGACTCTAATATCATGTTAGGAATCTCGACTCTCCACAATGGTATGATATTATCCACTTTGAGCATAAGCTCTCGTGACTTTGCTTTGGGCTTCCAAAAAGGCCTCCTACCAATGGAGATGTATTCCTTATAAACCCGTGGTCATTCCCTAAATTAGCGAACGTGGGACTCCCTCCCAATAATCCTCAACAAAGGTCTAATTTAGTGCAAAATTTTATACGCTAATAGCCTAATGAATGTTCTGATTCTTTTCAATCTTGAATGGCAGCTCCCCTTGGGCTGCAACCGGAGGAATGGATCGTAAGCTCATCATTTGGGATCTTCGACAGTCGACGCCAGCACGAGGTCTATTCACTACTAAATTATGTTTTTAAGTTCGTAAAATAGTGTATTTAGTTTACCATTTATCTTCATAACCCTTCATTAGTGTTGATTGTAAGTAGATTTGAATAGTTGGGTTTGACTTGTTTAAGGATAAACATACCTTCCTTTTATTTTGGACAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGTGTGTCGATGGTCGTGTTCGAATATGGGATACCCTCTCTGGAGAGTGTGTAAGAACCTTCACCGGGCACTCCGACACCATCCAATCTCTATCGGTGTCTGCCAATCATGAGTACCTTGTTTCTGTTGCTCTCGATACTACCGCTCGGATTTTTGAGATTGCTAAGTATCATTGAGGGAATAGGATCTTTGTACTTGAATGTGACAAGTTTCGATCCCCATTGTCGATTCTTGTATAATTATACAATTTTATACCGTTGTATGTGTTCGTCTTGCAAGTAATTGTATGTATATTGTTGTCAGTGTTGTGTAATTTTTATTTTCATTTAAGGGTTAGTCGAACCTAAGATTTTTCATGTAATGGATAATGTAATAACATAAATTACAACAATTTTTTAGTTGCTTGTTCGGGCGAATAAGGGCACTCCACGACGAACGTTGGAAGCGTAGGGGAATTGTGTTGTATGAAGGAGTCGTCATTGTTTATTTAAGAATAATGAAAACATAAATGTCGATTTTTTTTTTTTTTCAATATTTGAGATGTTTTAGGATACACTTCCTTAAATGAAATTAGCGTTATCATTGCATACAATACTCGATAATAATTTTGTCGATATAAGATATTTGAGATTGAGTCAACATTTTGTCTTTGAAATCTTTATTAAGATTTATGGGACATGTCTAGTTGTTCCAAATCATTCATTTGAAATTTGTTAGATAGTTGATTGGTTAAGTCTATTGGTCTATTAGGATGTTAAGTCTATTGGTCTGTTAGGATACATCAGCTGCATACATCTCTGCACTTCCACTTGACACCTATCGTAATAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAAACGGCTACCTTCTACCTTCTCTTGAATTCTCAAAACTTCTGCTCCATCCCTGTAGGGGTAAAGAACCCATCACTGTCTCGACTGTGGATAGATAACTCATCGTTGTCTCCGCTGTGCTAAATTGTTTTTAAAAAAATGGAAGATTGTGAATAAATTAAAAAAAAAAAAAGAAGGAAAAGAAACACATAAGGCAAAAAGAAAGATCGGAAAAGTGTTAAACTGTTTTAAATTGTTTATATGAAAATAATATTATAACGTACATATATATGTTCAAAGACGTTACTCATGCAAAGACTGTAATGTTTGCATAAAATCTAACACATGGACCATTGTAAATTGGAGAAATAATTTTGCAGAAGTTCGAACTTGAAATTAATGTCTTGGGCTCAGATAGATTTACTTGATTTCAAATAACAGAATCGAACTTTCATTAACAATAAATTTCGAACTTGAAATTAATGTCTTGGGCTCAGATAGATTTACTTGATTTCAAATAACAGAATCGAACTTTCATTAACAATAAATTAGTGACAACAGCTTTAGCTAATAAGGTAAGTGACCACATTTTTGTTGGAGTTAGCAAATTGATTGATCTATGATGGTACAAGTTTGGTGGCTCCTCCATGATGCTTACATACTATTTGTATTGTGATGTGTTGTATGTCATGTATACATATGATATCCTTTATGATGCTTACATACTATTTGTATTGTATTGTGATGTGTTGTATGTCATGTATACATATGATATCCTTTACACTATATTGTGAAGGAAATGTTTAATTATAGTTATGAAAGTTATTACTCTAAACCTCCTAAGACGTAGTGCATCATGATCACATATTATCCTCCAAAGATTTTCCGCACATGTTTCTTAAAGGACACCCTGCCGATGTTTCTTGCAAGTTTACCCTACCCATGTTTTTGTAGAATGTCCTACCCATGTTTTCTCGCAAGGTGTCCACAAACTCACATTCTAATGTAAAGAGAAACGCCATAACTCACAAGGGAAGAAAAAAGAATCTGGGTACTACACGTATATCAAATTCAAGGTGTTTAGACGAAAAATGGAGCTTCTACCACCCACAATTAATATATTGTTTGTATGCAAAAGATCATGTAATTTCTCATATATCTCAAAAAGGGTAAATGGAAGTCAGATATAATTCAATCTTTAAATCTAAAACTGGGACTAACAAACAAAATTGAGTCGATTATGCAGCCAAAAAAGAAGGGTGATATTCCTAAATAA

mRNA sequence

ATGTGGAAACCTCTCCCTAACACACGCGTTTCAATGCTTGCTCTTACCGGTTCAAAAGATGGTTCTGTTCATATTGTGAACATATCGACTGGAAAGGTCGTTAATTCTCTGGTTTCTCATTCAAATTCAATCGAGTGCATCGGTCTAGCGCCAAGCTCCCCTTGGGCTGCAACCGGAGGAATGGATCGTAAGCTCATCATTTGGGATCTTCGACAGTCGACGCCAGCACGAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGGTAAATGGAAGTCAGATATAATTCAATCTTTAAATCTAAAACTGGGACTAACAAACAAAATTGAGTCGATTATGCAGCCAAAAAAGAAGGGTGATATTCCTAAATAA

Coding sequence (CDS)

ATGTGGAAACCTCTCCCTAACACACGCGTTTCAATGCTTGCTCTTACCGGTTCAAAAGATGGTTCTGTTCATATTGTGAACATATCGACTGGAAAGGTCGTTAATTCTCTGGTTTCTCATTCAAATTCAATCGAGTGCATCGGTCTAGCGCCAAGCTCCCCTTGGGCTGCAACCGGAGGAATGGATCGTAAGCTCATCATTTGGGATCTTCGACAGTCGACGCCAGCACGAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGGTAAATGGAAGTCAGATATAATTCAATCTTTAAATCTAAAACTGGGACTAACAAACAAAATTGAGTCGATTATGCAGCCAAAAAAGAAGGGTGATATTCCTAAATAA

Protein sequence

MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPARGWSIMSYLDWHVEISCNRGKWKSDIIQSLNLKLGLTNKIESIMQPKKKGDIPK

Homology

[Close]

BLAST of CmoCh09G012410 vs. ExPASy Swiss-Prot
Match: F4I9T0 (BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 26/78 (33.33%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1    MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGG 60
            M  PL N  VS     G+ + S H+++++ G+VV S+  H + + C+ +   S   ATG 
Sbjct: 2334 MQMPLENFLVS----CGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGS 2393

Query: 61   MDRKLIIWD-LRQSTPAR 78
             D  +++WD LR  TP +
Sbjct: 2394 YDTTVMVWDILRMRTPEK 2407

[Close]

BLAST of CmoCh09G012410 vs. ExPASy Swiss-Prot
Match: O61585 (Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus OX=7668 GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 20/60 (33.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 13  LALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQ 72
           L + GS+ G++ I ++   K+V +L  H NSI C+   P   + A+G  D  + +WD+R+
Sbjct: 73  LVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRR 132

[Close]

BLAST of CmoCh09G012410 vs. ExPASy Swiss-Prot
Match: Q5FVN8 (WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 12  MLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLR 71
           MLA +GS D SV I +I T  V+++L  H+  +     AP++   ATG MD+ + IW   
Sbjct: 253 MLA-SGSVDKSVIIYDIGTQSVLHTLTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFD 312

Query: 72  QSTPARGWSIMSYLDWHVE 91
             TP +  S+   L   +E
Sbjct: 313 LETPCQAGSVSDQLKHFIE 330

[Close]

BLAST of CmoCh09G012410 vs. ExPASy Swiss-Prot
Match: Q54J37 (Striatin homolog OS=Dictyostelium discoideum OX=44689 GN=strn PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-05
Identity = 21/62 (33.87%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 13  LALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQ 72
           LA+TGS+D  +   ++++  VV+S+++HSNSI  + + PS  + A+   D  +  WD+  
Sbjct: 725 LAMTGSEDHKIEFFDLNSNTVVHSMIAHSNSISSLTIDPSGLYIASCAHDSSIRFWDISS 784

Query: 73  ST 75
            T
Sbjct: 785 KT 786

[Close]

BLAST of CmoCh09G012410 vs. ExPASy Swiss-Prot
Match: Q9D994 (WD repeat-containing protein 38 OS=Mus musculus OX=10090 GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 16  TGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP 75
           +G  D    +  + +G+ V+ LV H +SI+    +P+S   ATG  D  + IWDLR STP
Sbjct: 127 SGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTP 186

Query: 76  ARGWSIMSY--LDWHV-EISC 94
                ++SY  L+ H   ISC
Sbjct: 187 -----VVSYHNLEGHTGNISC 202

[Close]

BLAST of CmoCh09G012410 vs. ExPASy TrEMBL
Match: A0A1S3CID2 (angio-associated migratory cell protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501304 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.1e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 8   TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLII 67
           T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLII
Sbjct: 215 TSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLII 274

Query: 68  WDLRQSTP 76
           WDLRQSTP
Sbjct: 275 WDLRQSTP 282

[Close]

BLAST of CmoCh09G012410 vs. ExPASy TrEMBL
Match: A0A1S3CIC4 (angio-associated migratory cell protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501304 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.1e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 8   TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLII 67
           T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLII
Sbjct: 243 TSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLII 302

Query: 68  WDLRQSTP 76
           WDLRQSTP
Sbjct: 303 WDLRQSTP 310

[Close]

BLAST of CmoCh09G012410 vs. ExPASy TrEMBL
Match: A0A0A0KBX7 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G016980 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 8   TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLII 67
           T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLII
Sbjct: 348 TSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLII 407

Query: 68  WDLRQSTP 76
           WDL+QSTP
Sbjct: 408 WDLQQSTP 415

[Close]

BLAST of CmoCh09G012410 vs. ExPASy TrEMBL
Match: A0A6J1IRV7 (angio-associated migratory cell protein OS=Cucurbita maxima OX=3661 GN=LOC111479949 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 68/120 (56.67%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 11  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDL 70
           S LAL+GS DGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDL
Sbjct: 246 STLALSGSNDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDL 305

Query: 71  RQSTPAR------GWSIMSYL--DWHVEISCNRGK---WKSDIIQSLNLKLGLTNKIESI 120
           RQS+P        G + ++++    +V   C  G+   W S + + +    G T+ I+S+
Sbjct: 306 RQSSPRSICEHEDGVTCLTWIGTSRYVVTGCVDGRVRIWDSLLGECVRTFTGHTDAIQSL 365

[Close]

BLAST of CmoCh09G012410 vs. ExPASy TrEMBL
Match: A0A6J1EQW6 (angio-associated migratory cell protein OS=Cucurbita moschata OX=3662 GN=LOC111436976 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 68/120 (56.67%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 11  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDL 70
           S LAL+GS DGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDL
Sbjct: 246 STLALSGSNDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDL 305

Query: 71  RQSTPAR------GWSIMSYL--DWHVEISCNRGK---WKSDIIQSLNLKLGLTNKIESI 120
           RQS+P        G + ++++    +V   C  G+   W S + + +    G T+ I+S+
Sbjct: 306 RQSSPRSICEHEDGVTCLTWIGTSRYVVTGCVDGRVRIWDSLLGECVRTFTGHTDAIQSL 365

[Close]

BLAST of CmoCh09G012410 vs. TAIR 10
Match: AT1G71840.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 11  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSS---PWAATGGMDRKLII 70
           S LA++GSKDGSVHIVNI TGKVV+SL SH++S+EC+  +PSS   P AATGGMD+KLII
Sbjct: 254 SSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLII 313

Query: 71  WDLRQSTP 76
           WDL+ STP
Sbjct: 314 WDLQHSTP 321

[Close]

BLAST of CmoCh09G012410 vs. TAIR 10
Match: AT1G58230.1 (binding )

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-07
Identity = 26/78 (33.33%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1    MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGG 60
            M  PL N  VS     G+ + S H+++++ G+VV S+  H + + C+ +   S   ATG 
Sbjct: 2334 MQMPLENFLVS----CGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGS 2393

Query: 61   MDRKLIIWD-LRQSTPAR 78
             D  +++WD LR  TP +
Sbjct: 2394 YDTTVMVWDILRMRTPEK 2407

[Close]

BLAST of CmoCh09G012410 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 20/60 (33.33%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 16  TGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP 75
           TG  D  V + ++  G+   +L  H ++I  + L+P   +  T GMD KL +WD+R   P
Sbjct: 197 TGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAP 256

[Close]

BLAST of CmoCh09G012410 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 40.8 bits (94), Expect = 9.7e-04
Identity = 20/58 (34.48%), Postives = 31/58 (53.45%), Query Frame = 0


Query: 11  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIW 69
           S L L+GSKD ++ I  I T K+   L  H++ +  +  +P      +GG DR L +W
Sbjct: 414 SRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471

The following BLAST results are available for this feature:

BLAST of CmoCh09G012410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I9T0	1.0e-05	33.33	BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 S...	[more]
O61585	2.9e-05	33.33	Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus O...	[more]
Q5FVN8	2.9e-05	35.44	WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=101...	[more]
Q54J37	3.8e-05	33.87	Striatin homolog OS=Dictyostelium discoideum OX=44689 GN=strn PE=3 SV=1	[more]
Q9D994	1.1e-04	37.04	WD repeat-containing protein 38 OS=Mus musculus OX=10090 GN=Wdr38 PE=2 SV=1	[more]

BLAST of CmoCh09G012410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CID2	9.1e-26	91.18	angio-associated migratory cell protein isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3CIC4	9.1e-26	91.18	angio-associated migratory cell protein isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KBX7	2.7e-25	89.71	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G...	[more]
A0A6J1IRV7	1.3e-24	56.67	angio-associated migratory cell protein OS=Cucurbita maxima OX=3661 GN=LOC111479...	[more]
A0A6J1EQW6	1.3e-24	56.67	angio-associated migratory cell protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CmoCh09G012410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71840.1	1.5e-20	70.59	transducin family protein / WD-40 repeat family protein	[more]
AT1G58230.1	7.2e-07	33.33	binding	[more]
AT2G43770.1	1.4e-05	33.33	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52820.1	9.7e-04	34.48	WD-40 repeat family protein / notchless protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 30..69 e-value: 1.1E-5 score: 34.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 32..69 e-value: 3.1E-6 score: 27.8
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 37..78 score: 12.112524
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 8..100 e-value: 1.3E-14 score: 55.9
None	No IPR available	PANTHER	PTHR19857:SF8	MITOCHONDRIAL DIVISION PROTEIN 1-RELATED	coord: 13..77
None	No IPR available	PANTHER	PTHR19857	MITOCHONDRIAL DIVISION PROTEIN 1-RELATED	coord: 13..77
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 37..71 score: 9.783781
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 56..70
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 15..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012410.1	CmoCh09G012410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding