CmoCh09G012270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G012270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	BnaC02g40070D protein
Location	Cmo_Chr09: 10474333 .. 10474791 (-)
RNA-Seq Expression	CmoCh09G012270
Synteny	CmoCh09G012270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAATCGATCAAAGAAAGCTCACTCATCTTTTTCGATCTTCAATTTTTTCAAATCCAAAAAAAGTAGAAAGGAAGATCACTGCGACCACAGTAGCTGTTGGGACGAGATGTCAAGATCGGGTAAGGTGTGGCCGAGCGATGAGGACAAAACGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTTTTGAATCTGAACGACAGACTGTTACTTTACCTGCCAATGGAATAAAACTCAATACGTAAATAACTTGTCTATATGTTTATATGTTTTTTTTTAATGCATTGAATGTATTCTATTTCTTTTTGTATGATATTAGTTCATCATAATAATATAATTTTAGGTTTTGGTTTGCCTTGGAACCAATGAATCTACAATATTTGATCTAGATTTTTAGACTACAATAA

mRNA sequence

ATGGGAGGCAACAATCGATCAAAGAAAGCTCACTCATCTTTTTCGATCTTCAATTTTTTCAAATCCAAAAAAAGTAGAAAGGAAGATCACTGCGACCACAGTAGCTGTTGGGACGAGATGTCAAGATCGGGTAAGGTGTGGCCGAGCGATGAGGACAAAACGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTTTTGAATCTGAACGACAGACTGTTACTTTACCTGCCAATGGAATAAAACTCAATACACTACAATAA

Coding sequence (CDS)

ATGGGAGGCAACAATCGATCAAAGAAAGCTCACTCATCTTTTTCGATCTTCAATTTTTTCAAATCCAAAAAAAGTAGAAAGGAAGATCACTGCGACCACAGTAGCTGTTGGGACGAGATGTCAAGATCGGGTAAGGTGTGGCCGAGCGATGAGGACAAAACGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTTTTGAATCTGAACGACAGACTGTTACTTTACCTGCCAATGGAATAAAACTCAATACACTACAATAA

Protein sequence

MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCWDEMSRSGKVWPSDEDKTHRWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLNTLQ

Homology

[Close]

BLAST of CmoCh09G012270 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.7e-38
Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHS-SCWDEMSRSGKVWPSDEDKTHRWVA 60
          MGGNNR KKAH+SFSIF+FFKS++ RK DHC+HS SC DEM RSGKVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 98
          EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NGIK N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSN 98

[Close]

BLAST of CmoCh09G012270 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHS-SCWDEMSRSGKVWPSDEDKTHRWVA 60
          MGGNNR KK+HSSFSIF+FFKS++ RK D+C+HS SC DEM RSGKVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 98
          EPGIDRKAKDYIDRIYRNRVFESERQT+T+  NG K N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSN 98

[Close]

BLAST of CmoCh09G012270 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.0e-34
Identity = 74/96 (77.08%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 3  GNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMSRSGKVWPSDEDKTHRWVAEP 62
          G NR KK+HSSFSIF+FFKSK+ RK DH DH   W DEM RS KVWPSDEDK H W+AEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 98
          GIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSN 97

[Close]

BLAST of CmoCh09G012270 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 74/96 (77.08%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 3  GNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMSRSGKVWPSDEDKTHRWVAEP 62
          G NR KK+HSSFSIF+FFKS++ RK DH DH   W DEM RS KVWPSDEDK H WVAEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 98
          GIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSN 97

[Close]

BLAST of CmoCh09G012270 vs. ExPASy TrEMBL
Match: A0A5A7SYN4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00380 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 3  GNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMSRSGKVWPSDEDKTHRWVAEP 62
          G ++ KK+HSSFS F+FFKSK S+KEDH DH   W D+ SRSGKVWPSDEDK H WVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTLPAN 93
          GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CmoCh09G012270 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 1  MGGNNRSKKAHSS--FSIFNFFKSKKSRKEDHCDHSSCWDEMSRSGKVWPSDEDKTHRWV 60
          MGG NRS   HSS  FS+F+FFK+++S +    +    WD+   + K   SDEDK + WV
Sbjct: 1  MGGKNRS---HSSKRFSLFSFFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WV 60

Query: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTVT 89
          AEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 AEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CmoCh09G012270 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 25 SRKEDH--CDHSSCWDEMSRSGKVWPSDEDKTHRWVAEPGIDRKAKDYIDRIYRNRVFES 84
          +R+  H   +  + WD++  + K W SDEDK + WVAEPGIDRKA  +I + + +RV ES
Sbjct: 3  ARRSSHHRVEADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSES 62

Query: 85 ERQTV 88
          ERQT+
Sbjct: 63 ERQTL 66

The following BLAST results are available for this feature:

BLAST of CmoCh09G012270 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G012270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6	4.7e-38	82.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A5A7SWT9	1.5e-36	79.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K7Y2	7.0e-34	77.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	1.2e-33	77.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SYN4	2.3e-32	78.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh09G012270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	1.4e-13	48.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	7.0e-10	47.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..88
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012270.1	CmoCh09G012270.1	mRNA