CmoCh09G012240 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTTAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGATGTTATCCGTAGTGATAATTGATATGGAATCTACTCTTCCTATGCTATATATATAAGAGAGAGGAATGGTTTTTTAATGAAATTACAGTCATACCCTTTTAATTTTTAAATAGATTATTTGGCCGTTTGTTGAATTCGACACAATCCTAGGTTTGACCAATGCTTTGTTTCTCCTTTAATTCATGTTTGACCAATGCTGATTTTGAATCATTATATATGTGACTCCAAATTTCATTTGTTTATGTGCTTTTCGGAAAGTATAGTACTGTATTTCATTATAAAAATTGTAATCATCTATACCTAGTACGGTATTCTTTCGAATCTTAAATCAGTATTTATTGATGAAAATTTGGTATTTCGAATCTCAAATCAAATCTCAAATCGAATCTCAAAGAAGAGATAAGTCCTATAGGAACTACTGTAACAGAAACAATGGTATTTCCAATTATAGCCCCTCTAGGATGTAAAATATATCTTTTCTCACTATCCCCATAGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIMSFSFRRKSILRYRRLQPPPLCPAVMIPLALRPLPQGCCS Homology
BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: P02956 (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: A4QJZ9 (Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: P83755 (Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2) HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A5A7QV25 (Photosystem II protein D1 OS=Striga asiatica OX=4170 GN=STAS_24887 PE=3 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22 Identity = 63/85 (74.12%), Postives = 65/85 (76.47%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A2L0VCP4 (Photosystem II protein D1 OS=Fraxinus chiisanensis OX=490838 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A0U2SYW5 (Photosystem II protein D1 OS=Oenothera oakesiana OX=482602 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A1V0IN99 (Photosystem II protein D1 OS=Photinia prionophylla OX=661349 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A0F7RND6 (Photosystem II protein D1 OS=Vigna radiata var. radiata OX=3916 GN=psbA PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. NCBI nr
Match: YP_010159198.1 (photosystem II protein D1 [Philenoptera violacea] >QRG31477.1 photosystem II protein D1 [Philenoptera violacea]) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22 Identity = 64/88 (72.73%), Postives = 66/88 (75.00%), Query Frame = 0
BLAST of CmoCh09G012240 vs. NCBI nr
Match: GER47751.1 (photosystem Q protein [Striga asiatica]) HSP 1 Score: 115.9 bits (289), Expect = 2.5e-22 Identity = 63/85 (74.12%), Postives = 65/85 (76.47%), Query Frame = 0
BLAST of CmoCh09G012240 vs. NCBI nr
Match: ALI90515.1 (PsbA, partial [Ryticaryum macrocarpum]) HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. NCBI nr
Match: WP_124939276.1 (photosystem II q(b) protein, partial [Vibrio viridaestus] >RQW61005.1 photosystem II q(b) protein, partial [Vibrio viridaestus]) HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22 Identity = 63/87 (72.41%), Postives = 65/87 (74.71%), Query Frame = 0
BLAST of CmoCh09G012240 vs. NCBI nr
Match: KAF6138338.1 (hypothetical protein GIB67_033140 [Kingdonia uniflora]) HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of CmoCh09G012240 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A ) HSP 1 Score: 115.5 bits (288), Expect = 3.0e-26 Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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