CmoCh09G012240 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G012240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II protein D1
LocationCmo_Chr09: 9981273 .. 9982379 (-)
RNA-Seq ExpressionCmoCh09G012240
SyntenyCmoCh09G012240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTTAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGATGTTATCCGTAGTGATAATTGATATGGAATCTACTCTTCCTATGCTATATATATAAGAGAGAGGAATGGTTTTTTAATGAAATTACAGTCATACCCTTTTAATTTTTAAATAGATTATTTGGCCGTTTGTTGAATTCGACACAATCCTAGGTTTGACCAATGCTTTGTTTCTCCTTTAATTCATGTTTGACCAATGCTGATTTTGAATCATTATATATGTGACTCCAAATTTCATTTGTTTATGTGCTTTTCGGAAAGTATAGTACTGTATTTCATTATAAAAATTGTAATCATCTATACCTAGTACGGTATTCTTTCGAATCTTAAATCAGTATTTATTGATGAAAATTTGGTATTTCGAATCTCAAATCAAATCTCAAATCGAATCTCAAAGAAGAGATAAGTCCTATAGGAACTACTGTAACAGAAACAATGGTATTTCCAATTATAGCCCCTCTAGGATGTAAAATATATCTTTTCTCACTATCCCCATAGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG

Protein sequence

MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIMSFSFRRKSILRYRRLQPPPLCPAVMIPLALRPLPQGCCS
Homology
BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: P02956 (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: A4QJZ9 (Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy Swiss-Prot
Match: P83755 (Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A5A7QV25 (Photosystem II protein D1 OS=Striga asiatica OX=4170 GN=STAS_24887 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 63/85 (74.12%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID---VYETNV 83
          SVFIIAFIAAPPVDID   +Y  N+
Sbjct: 61 SVFIIAFIAAPPVDIDXSLLYGNNI 70

BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A2L0VCP4 (Photosystem II protein D1 OS=Fraxinus chiisanensis OX=490838 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A0U2SYW5 (Photosystem II protein D1 OS=Oenothera oakesiana OX=482602 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A1V0IN99 (Photosystem II protein D1 OS=Photinia prionophylla OX=661349 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. ExPASy TrEMBL
Match: A0A0F7RND6 (Photosystem II protein D1 OS=Vigna radiata var. radiata OX=3916 GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. NCBI nr
Match: YP_010159198.1 (photosystem II protein D1 [Philenoptera violacea] >QRG31477.1 photosystem II protein D1 [Philenoptera violacea])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 64/88 (72.73%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDIDVYETNVCISIMS 89
          SVFIIAFIAAPPVDID     V  S++S
Sbjct: 61 SVFIIAFIAAPPVDIDGIREPVSGSLLS 73

BLAST of CmoCh09G012240 vs. NCBI nr
Match: GER47751.1 (photosystem Q protein [Striga asiatica])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-22
Identity = 63/85 (74.12%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID---VYETNV 83
          SVFIIAFIAAPPVDID   +Y  N+
Sbjct: 61 SVFIIAFIAAPPVDIDXSLLYGNNI 70

BLAST of CmoCh09G012240 vs. NCBI nr
Match: ALI90515.1 (PsbA, partial [Ryticaryum macrocarpum])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. NCBI nr
Match: WP_124939276.1 (photosystem II q(b) protein, partial [Vibrio viridaestus] >RQW61005.1 photosystem II q(b) protein, partial [Vibrio viridaestus])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 63/87 (72.41%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDIDVYETNVCISIM 88
          SVFIIAFIAAPPVDID     V  S++
Sbjct: 61 SVFIIAFIAAPPVDIDGIREPVSGSJL 72

BLAST of CmoCh09G012240 vs. NCBI nr
Match: KAF6138338.1 (hypothetical protein GIB67_033140 [Kingdonia uniflora])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

BLAST of CmoCh09G012240 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-26
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESES---------------LWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A4QJ964.2e-2580.26Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1[more]
A4QJI04.2e-2580.26Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1[more]
P029564.2e-2580.26Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1[more]
A4QJZ94.2e-2580.26Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1[more]
P837554.2e-2580.26Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5A7QV251.2e-2274.12Photosystem II protein D1 OS=Striga asiatica OX=4170 GN=STAS_24887 PE=3 SV=1[more]
A0A2L0VCP41.6e-2280.26Photosystem II protein D1 OS=Fraxinus chiisanensis OX=490838 GN=psbA PE=3 SV=1[more]
A0A0U2SYW51.6e-2280.26Photosystem II protein D1 OS=Oenothera oakesiana OX=482602 GN=psbA PE=3 SV=1[more]
A0A1V0IN991.6e-2280.26Photosystem II protein D1 OS=Photinia prionophylla OX=661349 GN=psbA PE=3 SV=1[more]
A0A0F7RND61.6e-2280.26Photosystem II protein D1 OS=Vigna radiata var. radiata OX=3916 GN=psbA PE=3 SV=... [more]
Match NameE-valueIdentityDescription
YP_010159198.11.1e-2272.73photosystem II protein D1 [Philenoptera violacea] >QRG31477.1 photosystem II pro... [more]
GER47751.12.5e-2274.12photosystem Q protein [Striga asiatica][more]
ALI90515.13.2e-2280.26PsbA, partial [Ryticaryum macrocarpum][more]
WP_124939276.13.2e-2272.41photosystem II q(b) protein, partial [Vibrio viridaestus] >RQW61005.1 photosyste... [more]
KAF6138338.13.2e-2280.26hypothetical protein GIB67_033140 [Kingdonia uniflora][more]
Match NameE-valueIdentityDescription
ATCG00020.13.0e-2680.26photosystem II reaction center protein A [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 43..81
e-value: 5.3E-9
score: 35.7
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149PHOTOSYSTEM II PROTEIN D1coord: 27..87
IPR036854Photosystem II protein D1/D2 superfamilyGENE3D1.20.85.10coord: 28..124
e-value: 4.2E-6
score: 28.5
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 27..83
NoneNo IPR availablePANTHERPTHR33149:SF29SUBFAMILY NOT NAMEDcoord: 27..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012240.1CmoCh09G012240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009635 response to herbicide
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function GO:0010242 oxygen evolving activity