CmoCh09G011230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G011230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr09: 6408724 .. 6409590 (-)
RNA-Seq Expression	CmoCh09G011230
Synteny	CmoCh09G011230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGACTAAACAGCTGAACAAGTCCCATGTCGACAGATTAGTCGAAATAGAAGAACAAATGCAATACTTACGGGAAGTCCCTGACAGTATTCGATTCCTAGATGAGCGAGTGAAAGAACTTGCTGACAAGACCCTCGCCGTTGACGCAATAAAGGGTCGGCTGGATGAGTTACCCATTCAAGAAATAATGTACCGAATGGAAAACCTAGAAATAAAAACCACAAAGAATGGTGGTTTTGAGCGAGGAGACAGCTCGACAGGCTCTGCTGGCCTGATTGAGGAGCGAGTCGATGGACTAGACAGCTCCCAAAAAGCGATGTTTCAGATGGTCACTGAACTATCTGAAGATGTGAAAGCAGCCCTTGACGTAGTCAGGGTAGAAATGGCGGACATAAGCGCTAGAGTAAACGTTGCCGTAAGGGTGGTGGAGAACCAAGCCCCTACCTGGAGCACAACGCGACCCAACAAGGTCAAACTTCCTGAACCCAAGCCCTTCTCCAGGGCTCGGGACGCCAAGGCCTTAGAGAACTACATCTTCGACCTTGAGCAGTACTTTAAAGCTATTGACACTGAGATAAAGGAAGAAAAGATCACTGTGGCCACCATGCATTTGGCTGAGGATGCGAAACTGTGGTGGCGGTCAAAGTATGTGGACATCCAAGAGGGCCAATGCACAATAGACACTTGGGAGAGACTAAAACAGGAGCTTCAGTCTCAATTCTTCCTAAGGAATGTGGAGATCATGGCCAGAAGGAAATTATGCGACCTTAAACATACGAGCAGCATTCGAGAATATGTCAAACAGTTCTCGTTACTCATGTTAGACATTCGACAGATGTCTGAGTTAGATAAGATCTTCTAG

mRNA sequence

ATGTCTTCGACTAAACAGCTGAACAAGTCCCATGTCGACAGATTAGTCGAAATAGAAGAACAAATGCAATACTTACGGGAAGTCCCTGACAGTATTCGATTCCTAGATGAGCGAGTGAAAGAACTTGCTGACAAGACCCTCGCCGTTGACGCAATAAAGGGTCGGCTGGATGAGTTACCCATTCAAGAAATAATGTACCGAATGGAAAACCTAGAAATAAAAACCACAAAGAATGGTGGTTTTGAGCGAGGAGACAGCTCGACAGGCTCTGCTGGCCTGATTGAGGAGCGAGTCGATGGACTAGACAGCTCCCAAAAAGCGATGTTTCAGATGGTCACTGAACTATCTGAAGATGTGAAAGCAGCCCTTGACGTAGTCAGGGTAGAAATGGCGGACATAAGCGCTAGAGTAAACGTTGCCGTAAGGGTGGTGGAGAACCAAGCCCCTACCTGGAGCACAACGCGACCCAACAAGGTCAAACTTCCTGAACCCAAGCCCTTCTCCAGGGCTCGGGACGCCAAGGCCTTAGAGAACTACATCTTCGACCTTGAGCAGTACTTTAAAGCTATTGACACTGAGATAAAGGAAGAAAAGATCACTGTGGCCACCATGCATTTGGCTGAGGATGCGAAACTGTGGTGGCGGTCAAAGTATGTGGACATCCAAGAGGGCCAATGCACAATAGACACTTGGGAGAGACTAAAACAGGAGCTTCAGTCTCAATTCTTCCTAAGGAATGTGGAGATCATGGCCAGAAGGAAATTATGCGACCTTAAACATACGAGCAGCATTCGAGAATATGTCAAACAGTTCTCGTTACTCATGTTAGACATTCGACAGATGTCTGAGTTAGATAAGATCTTCTAG

Coding sequence (CDS)

ATGTCTTCGACTAAACAGCTGAACAAGTCCCATGTCGACAGATTAGTCGAAATAGAAGAACAAATGCAATACTTACGGGAAGTCCCTGACAGTATTCGATTCCTAGATGAGCGAGTGAAAGAACTTGCTGACAAGACCCTCGCCGTTGACGCAATAAAGGGTCGGCTGGATGAGTTACCCATTCAAGAAATAATGTACCGAATGGAAAACCTAGAAATAAAAACCACAAAGAATGGTGGTTTTGAGCGAGGAGACAGCTCGACAGGCTCTGCTGGCCTGATTGAGGAGCGAGTCGATGGACTAGACAGCTCCCAAAAAGCGATGTTTCAGATGGTCACTGAACTATCTGAAGATGTGAAAGCAGCCCTTGACGTAGTCAGGGTAGAAATGGCGGACATAAGCGCTAGAGTAAACGTTGCCGTAAGGGTGGTGGAGAACCAAGCCCCTACCTGGAGCACAACGCGACCCAACAAGGTCAAACTTCCTGAACCCAAGCCCTTCTCCAGGGCTCGGGACGCCAAGGCCTTAGAGAACTACATCTTCGACCTTGAGCAGTACTTTAAAGCTATTGACACTGAGATAAAGGAAGAAAAGATCACTGTGGCCACCATGCATTTGGCTGAGGATGCGAAACTGTGGTGGCGGTCAAAGTATGTGGACATCCAAGAGGGCCAATGCACAATAGACACTTGGGAGAGACTAAAACAGGAGCTTCAGTCTCAATTCTTCCTAAGGAATGTGGAGATCATGGCCAGAAGGAAATTATGCGACCTTAAACATACGAGCAGCATTCGAGAATATGTCAAACAGTTCTCGTTACTCATGTTAGACATTCGACAGATGTCTGAGTTAGATAAGATCTTCTAG

Protein sequence

MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGGFERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

Homology

[Close]

BLAST of CmoCh09G011230 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.1e-92
Identity = 183/292 (62.67%), Postives = 233/292 (79.79%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. ExPASy TrEMBL
Match: A0A5A7T3M3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002020 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.5e-92
Identity = 183/292 (62.67%), Postives = 232/292 (79.45%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK   +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTRLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. ExPASy TrEMBL
Match: A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 4.3e-92
Identity = 182/292 (62.33%), Postives = 233/292 (79.79%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE++ R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELVTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAPT      ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 5.6e-92
Identity = 182/292 (62.33%), Postives = 232/292 (79.45%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 5.6e-92
Identity = 182/292 (62.33%), Postives = 232/292 (79.45%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 2.3e-92
Identity = 183/292 (62.67%), Postives = 233/292 (79.79%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. NCBI nr
Match: KAA0037573.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 5.2e-92
Identity = 183/292 (62.67%), Postives = 232/292 (79.45%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK   +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTRLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. NCBI nr
Match: KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 347.8 bits (891), Expect = 8.8e-92
Identity = 182/292 (62.33%), Postives = 233/292 (79.79%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE++ R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELVTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAPT      ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 1.2e-91
Identity = 182/292 (62.33%), Postives = 232/292 (79.45%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

[Close]

BLAST of CmoCh09G011230 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 1.2e-91
Identity = 182/292 (62.33%), Postives = 232/292 (79.45%), Query Frame = 0


Query: 1   MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELP 60
           MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEERVDGLDSSQKAMFQMVTELS 120
           IQE+M R++ LE  TT N G    +ERGDSSTGS   IEERV  LDSSQK + +M+  +S
Sbjct: 61  IQELMTRVDALE--TTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMS 120

Query: 121 EDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKAL 180
           ED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKAL
Sbjct: 121 EDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKAL 180

Query: 181 ENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQ 240
           ENYIFDLEQYF+A +T  +E K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+
Sbjct: 181 ENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKR 240

Query: 241 ELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF 289
           EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Sbjct: 241 ELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVF 290

The following BLAST results are available for this feature:

BLAST of CmoCh09G011230 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G011230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYE6	1.1e-92	62.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T3M3	2.5e-92	62.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7UIP7	4.3e-92	62.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3C4R1	5.6e-92	62.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	5.6e-92	62.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of CmoCh09G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03099.1	2.3e-92	62.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037573.1	5.2e-92	62.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053339.1	8.8e-92	62.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.2e-91	62.33	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	1.2e-91	62.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh09G011230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 221..241
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 108..282
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 108..282
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 201..287 e-value: 2.4E-11 score: 43.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G011230.1	CmoCh09G011230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding