CmoCh09G010410 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G010410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description2'-5' RNA ligase
LocationCmo_Chr09: 5583430 .. 5586667 (-)
RNA-Seq ExpressionCmoCh09G010410
SyntenyCmoCh09G010410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCTTGTTCAGAGCGATTCTTCCCAGTAAATAGCCGATCCAACTGTGTGGATGGAGTTGTAGTGTTGATCTTTTCGCTGAGGTACTGTTTATGTTCTGTATTGGTTTATTGAATTGTAATGCGTTTGAAAATGTTGTGTTTGGTAGTGAAATTCTTCCTTGAAGCTTTTTGCCTTTTGTTGAGTTTTGAATTAGGTGATTAGTTTGCGAGTATGTGATGTTGTCGTTATAGTTCGACTTTAGTTTATTTTTACGGTTCGAGTTTGTGGAGCTTTACTTGATCGTTTCTTTAGTGGCTAGCAGATTTTGGTTGATTTGGTCAATGTTTTCAAGGTTGGTAAGGTTTGTGTAATGTTGAATGTTGAATGCTTTTCTTATTGCATTGCCAACCTTAAATGCTGCTCATACTCTGGTTCCAGAATTTATTACTCTGTGTATATCATAATCTTTTATGGTTATGGAAGTTTATACAATGCAATATACTGCTGAGAGAATGAACCTGAAACATCTGTACGATCGGGTTGATTTTCTTTTGCAGATGGTTACGAGTGCATTATGGATATCAGGGTGCTGTGAGATCTTGTGTGATGGAAAACTACTAAACTATGTAAAAGTTAGATTCCAAACACAGAACATGAAATTATTTACATTTGTTTCAATTGTATTTGTGTTCATAACACCGTCATTTATCATGAGAAACCTGACTAATTTCAGGACAAACAATTTGGAGAAAGAATCACCTTTCAAGGTTACAAATTCTGACACTAAATCCTTGTAGCAATCTTATGTGTACACCATAAACACACCAACATTAATCATCCTCTTCATCAAGCTAGAAACCTTTCCAAGCATTAAGAATTTCATGGAAGATCTCAGCTATTAGGTCCCTTTCTGCATTTTGCAGAAAGACATTGAATTCATCTCGGATGTCGAGTATCTTGCCAAACTTCACAAGATACTCCATGCAGCTGGTCTTCAGTTTTGGCAATTGATAAAGAGATGCATTTTGGAGTCTTTCAAGAACATTTTTGGCATCAATATCTTCTAGCAGACTATCATGGCAGGCTTCTTTTAGGTCATCTATGTCATATTTATCAGCTGCATGAAGAAGTGCCAGTCTATGGACGAGAAACTCTTCATGTTGGATATTACCATACAGATAATTAAGAAGTGCCTCGCAAGCTTCAAAAGACATATCAGAGATGTTTATTGTAGATAGTTCCTTTTCTTTCAGGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGGTGTGCTCTAACACTTCCATCAGATGCATTAATTATGATATCGGTGTGGATGCTTTCCTTCAACATTCGACCCAATGAAATAAGAGCTCTTGAATTCGATCGTTGTTGTGTCAATCCATCCGCCCAGATGGAGGAAGGTTCCCCACCCTGTTAGTAATTTGACAACAATGAGTTAAAAGAGGAGCGAAATAGGTATTCAATCGTTCTTTCTTTAACACAGGCGTTGATAACTTTTTTTTTCTTAATCTTAAGGCATAACTTTTATCAACTGCTTCTGCATTTGACTTGTTATTATCTATGATCCTTAGGTTCTGTGTTATTATAGCCAACTCCACAATCATCTTTGGAAGAAATATGCATGCACTAGCAACGGACAAATATTTATATGCTTACCTCGGGTGAGGCAGTCTTCAAGTCAAGGAATTCGACATCAATAATGAACTTTCCCGTTAATGGAACTTCAATTGGCCAAATAAAGTCGTCGTTGTTTTTAAGCTGTTTGTCTATTATTTCTGCATAGAGGAAGATGAGGTAACGTTATTGGTCATTAGAGGAACTGAAGGTCATCAAGAAAAGAAGAAGTTTTTAATAAAAGTCCAACAACAAATCAAATTTCTGAACAGAGATTAGCCATGTTCCCCATCAAATAATTACGGATGTCTAATTTTATTTGGGTGAAGTATTTCAACTTTTATTCATGAATCAGAACCTGAAGATATAATTGAAGGTGAATGTCTTTTCAATCTGAAAACTAACTACTCTGTCTTGAAAATGTACAGGAAAGGAGAAGGAAATTACCTGGATGAGTCAAAGCCTTCCGATCTCCTACAGAGGAAACCACTCGGATGATGAAAGATACAATCGGGGGATTGGCCCTTGTTACGCTCGTTATCTCTGGGTATAATTTAACATATAAAAGCTTGTTTTTTTCCACCGATAAATGCCTTCATCCAAACAAAAATATTAGATATCTATACATCCCTATCCTGTTTGGATAGAAGAGAAAAAAACATGCAACATCTCCAATTAGAAGGGGGAAAACAGATTATTGTCATTATCTTCCATTTTCTCTTCTTTTGAAGAGATGGCTAGGATCTTATCCTCTCCTTTCGTCACCACATACAAATCAGTTTCTCTTAGGATAACTGGGTATCGATTTATTTAACCTTATTTCACAAAAATGTAGCTTTAAACGAAACTAATGAACAAAGAAAGATTAATTTACCATTTCCACTTGCCGATTTTGAAAGGATCGGATTTGCGGTAGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTGCTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGGTTGACGAATTCTGCAGATATTACTCATAAACATATACAGAACAAAACCTATAAAGATAAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTTCTGCACTGCTCACTGATCAAAGCATAAGAATATATGAGCGAACAAATGACGTTGATTCTTGTGTATTTATTGCTTTTGTTATCTCATGAAATTTGACGCTTTCAGTGGTACCCAGCACGCCAAGATGTTGTCGATGCTTTACGCCATTGTTCTTGAAGGTTTGATTCTGTGAAGAGGGTTTTGTTGTTTGGTTGATAGACGAAATGGGTTTTAAAACGCTTGTTTGTTGGCTTACACTGCACTTAATTGCGAGGGCGTATCTGGGTCGTGGGTGGTTGGATCGTAAAGCTAATGGATCATTTATTGGTCTTCTTTTATCTTTTTGGGTTTTCTTTCCCACATTGATATATGTCAATCTTGTTTCAGCATTTGGCTTGGAGGCGTGGTCTTTGCTCCTTCAAAGCAAAGTATCTACTTAA

mRNA sequence

ATGGACTCTTGTTCAGAGCGATTCTTCCCAATTTTGGTTGATTTGGTCAATGTTTTCAAGGTTGGTAAGAAAGACATTGAATTCATCTCGGATGTCGAGTATCTTGCCAAACTTCACAAGATACTCCATGCAGCTGGTCTTCAGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGGTGTGCTCTAACACTTCCATCAGATGCATTAATTATGATATCGGTGTGGATGCTTTCCTTCAACATTCGACCCAATGAAATAAGAGCTCTTGAATTCGATCGTTGTTGTGTCAATCCATCCGCCCAGATGGAGGAAGGAAAGGAGAAGGAAATTACCTGGATGAGTCAAAGCCTTCCGATCTCCTACAGAGGAAACCACTCGGATGATGAAAGATACAATCGGGGGATTGGCCCTTGTTACGCTCGTTATCTCTGGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTGCTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGTGGTACCCAGCACGCCAAGATGTTGTCGATGCTTTACGCCATTGTTCTTGAAGCATTTGGCTTGGAGGCGTGGTCTTTGCTCCTTCAAAGCAAAGTATCTACTTAA

Coding sequence (CDS)

ATGGACTCTTGTTCAGAGCGATTCTTCCCAATTTTGGTTGATTTGGTCAATGTTTTCAAGGTTGGTAAGAAAGACATTGAATTCATCTCGGATGTCGAGTATCTTGCCAAACTTCACAAGATACTCCATGCAGCTGGTCTTCAGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGGTGTGCTCTAACACTTCCATCAGATGCATTAATTATGATATCGGTGTGGATGCTTTCCTTCAACATTCGACCCAATGAAATAAGAGCTCTTGAATTCGATCGTTGTTGTGTCAATCCATCCGCCCAGATGGAGGAAGGAAAGGAGAAGGAAATTACCTGGATGAGTCAAAGCCTTCCGATCTCCTACAGAGGAAACCACTCGGATGATGAAAGATACAATCGGGGGATTGGCCCTTGTTACGCTCGTTATCTCTGGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTGCTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGTGGTACCCAGCACGCCAAGATGTTGTCGATGCTTTACGCCATTGTTCTTGAAGCATTTGGCTTGGAGGCGTGGTCTTTGCTCCTTCAAAGCAAAGTATCTACTTAA

Protein sequence

MDSCSERFFPILVDLVNVFKVGKKDIEFISDVEYLAKLHKILHAAGLQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPSAQMEEGKEKEITWMSQSLPISYRGNHSDDERYNRGIGPCYARYLWVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVLEAFGLEAWSLLLQSKVST
Homology
[Close]
BLAST of CmoCh09G010410 vs. ExPASy TrEMBL
Match: A0A5A7QKP2 (2'-5' RNA ligase OS=Striga asiatica OX=4170 GN=STAS_22930 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 47  LQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPS 106
           L+S ENML  TG+R AR AR A T PS+ALI +SVWM S ++RP  +RA+  D  CV P 
Sbjct: 133 LRSWENMLRNTGERAARTARWARTDPSEALISMSVWMPSESMRPRHVRAVWSDWACVGPK 192

Query: 107 AQMEEGKEKEITWMSQSL 125
            Q+E G E  +  M   L
Sbjct: 193 LQIERGSEPCLDSMKNML 210

[Close]
BLAST of CmoCh09G010410 vs. ExPASy TrEMBL
Match: A0A0A0K596 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G192210 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 189 MQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVLEA-FGLEAWSL 231
           MQPKIPSR CSPDFPSG QHAK+L MLYAI +E  FGL AW L
Sbjct: 1   MQPKIPSRKCSPDFPSGAQHAKILGMLYAIDVEGLFGLVAWWL 43

[Close]
BLAST of CmoCh09G010410 vs. ExPASy TrEMBL
Match: A0A654EK96 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS4707 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-05
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 26 IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR 67
          +E +SD++Y AKLHKI HAA LQ  SC+NML KTG+R AR AR
Sbjct: 39 VELVSDLKYFAKLHKISHAASLQFRSCKNMLRKTGERAARTAR 81

[Close]
BLAST of CmoCh09G010410 vs. ExPASy TrEMBL
Match: A0A1P8ASY8 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g55755 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-05
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 26 IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR 67
          +E +SD++Y AKLHKI HAA LQ  SC+NML KTG+R AR AR
Sbjct: 39 VELVSDLKYFAKLHKISHAASLQFRSCKNMLRKTGERAARTAR 81

[Close]
BLAST of CmoCh09G010410 vs. NCBI nr
Match: KAG7037301.1 (hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-22
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0 

Query: 151 WVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPSGTQHAK 210
           +VQEARFSILH ARRDVVSTLYAESLILANARAAVIS MQPK+PSR CSPDFPS TQHAK
Sbjct: 3   FVQEARFSILHCARRDVVSTLYAESLILANARAAVISWMQPKMPSRKCSPDFPSCTQHAK 62

Query: 211 MLSMLYAIVLEA--FGLEAW 229
           ML +LY I +E   FG   W
Sbjct: 63  MLVVLYDIDVEGLIFGRGIW 82

[Close]
BLAST of CmoCh09G010410 vs. NCBI nr
Match: GER45943.1 (2'-5' RNA ligase [Striga asiatica])

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-09
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 47  LQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPS 106
           L+S ENML  TG+R AR AR A T PS+ALI +SVWM S ++RP  +RA+  D  CV P 
Sbjct: 133 LRSWENMLRNTGERAARTARWARTDPSEALISMSVWMPSESMRPRHVRAVWSDWACVGPK 192

Query: 107 AQMEEGKEKEITWMSQSL 125
            Q+E G E  +  M   L
Sbjct: 193 LQIERGSEPCLDSMKNML 210

[Close]
BLAST of CmoCh09G010410 vs. NCBI nr
Match: NP_001322058.1 (hypothetical protein AT1G55755 [Arabidopsis thaliana] >ANM59720.1 hypothetical protein AT1G55755 [Arabidopsis thaliana] >CAA0297552.1 unnamed protein product [Arabidopsis thaliana] >VYS49228.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-04
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 26 IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR 67
          +E +SD++Y AKLHKI HAA LQ  SC+NML KTG+R AR AR
Sbjct: 39 VELVSDLKYFAKLHKISHAASLQFRSCKNMLRKTGERAARTAR 81

The following BLAST results are available for this feature:
BLAST of CmoCh09G010410 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G010410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7QKP22.2e-0950.002'-5' RNA ligase OS=Striga asiatica OX=4170 GN=STAS_22930 PE=4 SV=1[more]
A0A0A0K5962.1e-0776.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G192210 PE=4 SV=1[more]
A0A654EK969.5e-0565.12Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS4707 PE=4 SV... [more]
A0A1P8ASY89.5e-0565.12Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g55755 PE=4 SV=1[more]
BLAST of CmoCh09G010410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037301.14.7e-2278.75hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyro... [more]
GER45943.14.5e-0950.002'-5' RNA ligase [Striga asiatica][more]
NP_001322058.12.0e-0465.12hypothetical protein AT1G55755 [Arabidopsis thaliana] >ANM59720.1 hypothetical p... [more]
BLAST of CmoCh09G010410 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G010410.1CmoCh09G010410.1mRNA