CmoCh09G009920 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G009920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATMRP3
Location	Cmo_Chr09: 5266622 .. 5270665 (-)
RNA-Seq Expression	CmoCh09G009920
Synteny	CmoCh09G009920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAACCCACCAATTTTGCCTCGCGGTCGAATTTAATTCTGCTCTCGTGGTTCCAAGTATGTTGGAAACTGTTTATAGAATTGCTTAAATCTACCTTCTATTCGCTTGAAAACGTAGCTGATATGTCATGATCAAATTCCATAAAAGAAAAGGTTCAAATTTTTTTACTAAGCTCTGATTATAGATCAATAATTTGTTTGAAAGTTCTTGCCTATCCTTTATTTATGCGTTTTATTCTTGGTACATGCAATTTCTTTTGATTAGTTCCTCTTTTCCACTCTCTATTTGGGTGGGAACGACATAGGGGCGTATTTGATCCATTAGGAAGACTGAGATATCTTAACCATTGAGTTATACACGGTTCATCTGTCGTATATGAACACGTTAGCCCAATATATCCGTGATATATTACTTAGTATCAATCTAAATCAAAATGGCTCATTCATCTTTAGGGAAACAATACACTAGTTCTTTGTAGCCATCACAAGTCTTCGTAAATTCACATAAACAGCTAGTGATACTAATAACAGCTAATCAAGAAGAGCTGGACTGAGAACCTGAGATTTTTATGTGGTTAAAAGTATAGCAAGTTCCAAAATTTGGTAGAGTCAGATGTAATAAAAGGGTCCGTTAACGCTCTTATCATCTGCCATGGCTTTCATTGAGAATCCGATCTTTGCGTGTACTCTGCAACTAGTTGAGAAAACGAGGATGACTTATCTTCTAGCAATCTTGTGGGGGTGTCATACTCCTCAATGAGTCCTACATGATGAGAAATGAAAGTCAAGTTATGGATGGACAAGTTACATGGTTTGGTGGACTATATGTGTATCAATACGAACCTTGACTTAGAAGCAAGACCATGTCACTGTCAAGGACTGAGGTTATTCGATGTGCAATCGTAATGACAGTACAGTCGGAAAAATGTTGTCGTAGAGTCTGTTGAATCAAGTTATCCGTAGCTGTATCGACAGATGCAGTAGCTTCATCAAGGACCAACACCTTACTCTTCTTGAGTAGCACTCGACCAAGGCAAACTAGCTGCCTCTGACCCATGCTCCAATTCTCTCCATTCTCACTAACTGCATTGTATTCACAAATGAAAGTTTGAAGAACTTCTCTTCATTGAAACCTTCACCAGAACATCCAGAAACATACCTGCTGAATCCAGCTTTCCTTCCTTTTTTCTCACTTCATCTCCAAGTAGGCATTTATCCAGTGCCTGATGCATCAATGAAATGCTTGAACAAAACAAAACAAGGTAGACTTCTTTCTAGGGAATGATTAGAAGAGGAAACCGTGTTACCTCCCAAATGTCTTCATCTGCATATTCTTCAAGGGGATCGAGATTGCTCCGCACAGTGCCTTCAAACATAGTAGGATCCTGAGGGATGATACTGAGTTTTGACCGCAAATCATGAAGTCCTATCGTTGTTATGTTGACGTTATCTATCACAATATGACCTGCTACGGGATCGACTATCCGAAAAAGTGTCTGTATTAGAGTTGATTTGCCACTTCCTGTTCTCCCAACAATGCCTGTTTTCTTTCCTCCTGGAAAAGTGCATGTAATACCTTGCAACACAAGAGGTAGCTGAGGTGCATAGCGAACCTACATGATAAAAGTTCAGGACAGAATCACAGGTATCAGATTTGGGAGCTGTTGGTATCAAAGGGTATAAAAAGAATTTGAAGTACCTGCAGGTTGTGAAGTTCAACTTCTCCGAACGTTGGCCAGCTACTATCCGGTCGGTTTTCCTCGATAACTAGAGGTGGCTCACTAGGGATTGAAGTATATTGAAATATTCTCTCCACTGATATAATTTTGTTCTCCATATTGCAAAGGTTCCATATTAGCGAAGCTTGCAACATATTGAGGTTAAGTCCATAGGTTACACACAAGCCAGCAATGCCTTCAGTGTAGAGAGTAAAATAAATTAGGCAGTTGGAAAAAAGAAGTACAAGATCATTGTTTGAAGATAGAACAGCTTGAAAATTGAACCTGGATCAATGACTCCCACAGGGATAGATACCAAGAAAATCAAAGACGAGGCGAATGTGATCGAAGACAATAAATCGAGACGGAAGCAGAGCCATTCCATTGCTGCAGCTGTGTGGAACTTGGGTCGAGAGTATGCATCTGTCAGTTTCATATTGGTGTCCTGGAATCTTGACTCTTGATCAAAGCTTCTAATAGTTGTTGATCCAGAAATCGTTTCGGAGAACAGTTGAATCCCTGGAGCTTTGCATACTCCAATCAACCGGGATAGCTCTCGTGCTGATGGAATATAATATTGCTGCATAACAAAAGCTCAATGTTAGGTAGCTGCACAGTAGAAGCTCTAAAGATTTTTGTTTTCAGATTATTTAACTACGAGATCCCACGTCGATTGGGGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGCAAACGTGTTTTAAAAACCTTGAGGGAAAGTCCGAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGTATCAGAGCTAGACGTTGGGCGATGTGCCAGCAAGGAGGCTGAGAGCCCACGAAGGTGGTGGACACGAGGCGGTGTACCAGCAAGGACGCTGGCCCCGAAGGGGGTAGATTGGGGGTCCCACATTGATTGGCAAAGGGAACGAGTTTCTGCGAGGATGCCGAGACCAGAAGGAGGTGGATTGTGAGATTTCACATCGGTTGGGGAGGAGAATGAATCATTTTTTATAAAGGTGTGGAAGATTCTCCCGAATGTTTTAAAAAATTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGTGGTGGGCGTTATAACTTTCCTACCCTGACAAACCACAAGATCAGAAGGCATACCTCATACCAGATGCATAAAGCCATCACAGGGATAAAGATGATGAAAACCTGCCATGCAACTTGAGACATTACTGCAATGGTTCCTAGGATTTGAATCAGACTGAAGCAGAAGGCCCCAACTCGAAATGGTATATCCATATCAATGGCACTTTGGTCTGTGGAGGCCTGTAAACAAAAGAACAGTATATACAAATTATATACAAATTATGATTATACAGGTTTCAAGTGACTAGTTCAAGAGCATCCATGAATATAAATTCACTCACTCTATTGAGGATTCTTCCACTCGGAGTAGAATCGAAGAACGACATGGGAGCCCGAAAGATGCTCGTGTGCATTTTAACGAAGAGTTCAGTTGCTGCTTTAAAACCAGCCGTCACAAGAAGGGCTGATCTCAAGAAGACACACAAAGAGCTTCCAATGGCCAAAGCAACATAGACGATAATCAATCGAGAGGTCGAAACAGGAGGCTCCATATCATCTGAAACAGGAGTAGCCCATGCCATCCAGTAATTACTTCCAATTTGGAGAATCTGAAAGAGAACCTGAGCAAGCAATATAATAGGCACAAGAGCTCCACCATAAGCATACTTGGTATATTTCCAGTACACTGAAAATCCAACTTTTCCTTTCTCTCTTTCTTCTTCTTGTACAAGCTGCCCTTTTGACTTAGTTTCATCAACTCCCTTCCCATCTTGTGTATCTGTTTTATCTTCCTCATATGTAATGCCATTAGTATTACTCATAGACCCATCTTCTTTGCTTGCAGATTTTCCAGAAGCATCTCCTTCCACAGAATTAATGGTGGATAATGCTTCCTCGTGTGCGCCAACGAGTGTCATAAAGTCGGTTCCAGAACGAAGAATTTCATCGTACTTTCCAGATTGAACAATTTTTCCATCTTTCATGACCTGATAGTAAAGAATCTCCTAAGTTCAGATGTAAAAGAACAAGGAGCATGACTAAAAACAGAGATAGAAGTCCTCTACTTACCAAGATAAGATCTGCAGCTGGTAAAAATTCTACTTGATGAGTGACATAAATGACTGTTTTTGAATTCAGAACACCAAGGAGACATTCCTGTCAGGATAATTCAAGCAGGATTATTGTAATGTGAGACCATAGCAGTAGGAGAGGGTTGCAAAATATTCTTTATAAG

mRNA sequence

ATGTTCAACCCACCAATTTTGCCTCGCGGTTGTGAAGTTCAACTTCTCCGAACGTTGGCCAGCTACTATCCGAACAGCTTGAAAATTGAACCTGGATCAATGACTCCCACAGGGATAGATACCAAGAAAATCAAAGACGAGGCGAATGTGATCGAAGACAATAAATCGAGACGGAAGCAGAGCCATTCCATTGCTGCAGCTGTGTGGAACTTGGGTCGAGAGTTTCAAGTGACTAGTTCAAGAGCATCCATGAATATAAATTCACTCACTCTATTGAGGATTCTTCCACTCGGAGTAGAATCGAAGAACGACATGGGAGCCCGAAAGATGCTCGTGTGCATTTTAACGAAGAGTTCAGTTGCTGCTTTAAAACCAGCCGTCACAAGAAGGGCTGATCTCAAGAAGACACACAAAGAGCTTCCAATGGCCAAAGCAACATAGACGATAATCAATCGAGAGGTCGAAACAGGAGGCTCCATATCATCTGAAACAGGAGTAGCCCATGCCATCCAGTAATTACTTCCAATTTGGAGAATCTGAAAGAGAACCTGAGCAAGCAATATAATAGGCACAAGAGCTCCACCATAAGCATACTTGATTTTCCAGAAGCATCTCCTTCCACAGAATTAATGGTGGATAATGCTTCCTCGTGTGCGCCAACGAGTGTCATAAAGTCGGTTCCAGAACGAAGAATTTCATCGTACTTTCCAGATTGAACAATTTTTCCATCTTTCATGACCTGATAGTAAAGAATCTCCTAAGTTCAGATGTAAAAGAACAAGGAGCATGACTAAAAACAGAGATAGAAGTCCTCTACTTACCAAGATAAGATCTGCAGCTGGTAAAAATTCTACTTGATGAGTGACATAAATGACTGTTTTTGAATTCAGAACACCAAGGAGACATTCCTGTCAGGATAATTCAAGCAGGATTATTGTAATGTGAGACCATAGCAGTAGGAGAGGGTTGCAAAATATTCTTTATAAG

Coding sequence (CDS)

ATGTTCAACCCACCAATTTTGCCTCGCGGTTGTGAAGTTCAACTTCTCCGAACGTTGGCCAGCTACTATCCGAACAGCTTGAAAATTGAACCTGGATCAATGACTCCCACAGGGATAGATACCAAGAAAATCAAAGACGAGGCGAATGTGATCGAAGACAATAAATCGAGACGGAAGCAGAGCCATTCCATTGCTGCAGCTGTGTGGAACTTGGGTCGAGAGTTTCAAGTGACTAGTTCAAGAGCATCCATGAATATAAATTCACTCACTCTATTGAGGATTCTTCCACTCGGAGTAGAATCGAAGAACGACATGGGAGCCCGAAAGATGCTCGTGTGCATTTTAACGAAGAGTTCAGTTGCTGCTTTAAAACCAGCCGTCACAAGAAGGGCTGATCTCAAGAAGACACACAAAGAGCTTCCAATGGCCAAAGCAACATAG

Protein sequence

MFNPPILPRGCEVQLLRTLASYYPNSLKIEPGSMTPTGIDTKKIKDEANVIEDNKSRRKQSHSIAAAVWNLGREFQVTSSRASMNINSLTLLRILPLGVESKNDMGARKMLVCILTKSSVAALKPAVTRRADLKKTHKELPMAKAT

Homology

[Close]

BLAST of CmoCh09G009920 vs. ExPASy TrEMBL
Match: A0A0A9G679 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 96  PLGVESKNDMGARKMLVCILTKSSVAALKPAVTRRADLKKTHKELPMAKAT 147
           PLGVESK D+GA  M +CIL  + VA L  AVTR + L +TH ELP A AT
Sbjct: 3   PLGVESKKDIGALNMAICILLNNRVAVLYAAVTRNSALMRTHNELPRANAT 53

[Close]

BLAST of CmoCh09G009920 vs. ExPASy TrEMBL
Match: A0A0A9ITV8 (ATMRP3 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.7e-05
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 96  PLGVESKNDMGARKMLVCILTKSSVAALKPAVTRRADLKKTHKELPMAKAT 147
           PLGVESK D+GA  M +CIL  + VA L  AVTR + L +TH ELP A AT
Sbjct: 3   PLGVESKKDIGALNMAICILLNNRVAVLYAAVTRNSALIRTHNELPRANAT 53

[Close]

BLAST of CmoCh09G009920 vs. NCBI nr
Match: KAG7024953.1 (hypothetical protein SDJN02_13773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 26  SLKIEPGSMTPTGIDTKKIKDEANVIEDNKSRRKQSHSIAAAVWNLGREFQVTSSRASMN 85
           SLKIEPGSMTPTGIDTKKIKDEANVIEDNKSRRKQSHSIAAAVWNLGREFQVTSSRASMN
Sbjct: 36  SLKIEPGSMTPTGIDTKKIKDEANVIEDNKSRRKQSHSIAAAVWNLGREFQVTSSRASMN 95

Query: 86  INSLTLLRILPLGVESKNDMGARKMLVCILTKSSVAALKPAVTRRADLKKTHKELPMAKA 145
           INSLTLLRILPLGVESKNDMGARKMLVCILTKSSVAALKPAVTRRADLKKT+KELPMAKA
Sbjct: 96  INSLTLLRILPLGVESKNDMGARKMLVCILTKSSVAALKPAVTRRADLKKTYKELPMAKA 155

Query: 146 T 147
           T
Sbjct: 156 T 156

The following BLAST results are available for this feature:

BLAST of CmoCh09G009920 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G009920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9G679	4.5e-05	58.82	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9ITV8	7.7e-05	58.82	ATMRP3 OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CmoCh09G009920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024953.1	1.2e-55	99.17	hypothetical protein SDJN02_13773, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh09G009920 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G009920.1	CmoCh09G009920.1	mRNA