CmoCh09G009300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G009300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNAase
Location	Cmo_Chr09: 4860139 .. 4860541 (-)
RNA-Seq Expression	CmoCh09G009300
Synteny	CmoCh09G009300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGAAGCAGTGTTCTGTTGAAAGCTTTCCTGCTTGGTAAACGATTTTGTAGGATTTGAATTCCAGAATAAATTCAATTATGTGCGTTCACATTTTCTAATAAATCTGAACGGCGATCTTCCAAATTGCCAATGGGGTCTCTTCTTTAGACCCAGAAAGTGAGAAAACTTATCTTTATAGGACCTTCTCTTTACTTAGAAAGCTAAGATAACACCAGCAACTAACATTCCTGTGGTGGCAATACTGCTTGGGATGGTTGAAAATCTGACACCGGTAGGTTCCCCAAGAGCTCACATCGACGGAAAGGTTTGGCACCTCGATGTCAGCTCTTCGCCACCTGGGGCTGTAGTATTTTCCAAGGGTAGGGTTGTTCGCCCATTAAAGCGGTACATAAGCTAG

mRNA sequence

ATGCAAAGAAGCAGTGTTCTGTTGAAAGCTTTCCTGCTTGCTAAGATAACACCAGCAACTAACATTCCTGTGGTGGCAATACTGCTTGGGATGGTTGAAAATCTGACACCGGTAGGTTCCCCAAGAGCTCACATCGACGGAAAGGTTTGGCACCTCGATGTCAGCTCTTCGCCACCTGGGGCTGTAGTATTTTCCAAGGGTAGGGTTGTTCGCCCATTAAAGCGGTACATAAGCTAG

Coding sequence (CDS)

ATGCAAAGAAGCAGTGTTCTGTTGAAAGCTTTCCTGCTTGCTAAGATAACACCAGCAACTAACATTCCTGTGGTGGCAATACTGCTTGGGATGGTTGAAAATCTGACACCGGTAGGTTCCCCAAGAGCTCACATCGACGGAAAGGTTTGGCACCTCGATGTCAGCTCTTCGCCACCTGGGGCTGTAGTATTTTCCAAGGGTAGGGTTGTTCGCCCATTAAAGCGGTACATAAGCTAG

Protein sequence

MQRSSVLLKAFLLAKITPATNIPVVAILLGMVENLTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS

Homology

[Close]

BLAST of CmoCh09G009300 vs. ExPASy TrEMBL
Match: A0A4D6NLE9 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g759 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.5e-11
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 24  VVAILLGMVENLTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           VV   + +   +T + SPRAHIDGKVWHL VSSSPPGAVV SKG  VRPLKRY+S
Sbjct: 324 VVTQRIKVTLGITGLSSPRAHIDGKVWHLHVSSSPPGAVVCSKGWAVRPLKRYVS 378

[Close]

BLAST of CmoCh09G009300 vs. ExPASy TrEMBL
Match: A0A6L2L370 (Protein DETOXIFICATION OS=Tanacetum cinerariifolium OX=118510 GN=Tci_028291 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 24  VVAILLGMVENLTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           VV+  + +   +T   SPRAHI+ KVWHLDV SS PG VV+SKG  VRPLKRY+S
Sbjct: 499 VVSQQIKVTLGITGCSSPRAHINEKVWHLDVGSSLPGVVVYSKGWAVRPLKRYVS 553

[Close]

BLAST of CmoCh09G009300 vs. ExPASy TrEMBL
Match: A0A6A5L4C2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048603 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-08
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 40  SPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           SPR HIDG+VWHLDV SS PGAVV  KG  VRPLKRY+S
Sbjct: 114 SPRVHIDGEVWHLDVGSSHPGAVVRPKGWAVRPLKRYVS 152

[Close]

BLAST of CmoCh09G009300 vs. ExPASy TrEMBL
Match: A0A0J1FIM8 (Uncharacterized protein OS=Peptococcaceae bacterium CEB3 OX=999898 GN=CEB3_c00930 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-08
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 35  LTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           +T +  PR HIDG+VWHLDV SS PGAVV  KG  VRPLKRY+S
Sbjct: 69  ITGLSPPRVHIDGEVWHLDVGSSHPGAVVGPKGWAVRPLKRYVS 112

[Close]

BLAST of CmoCh09G009300 vs. ExPASy TrEMBL
Match: A0A0A2U3F5 (RNAase OS=Desulfosporosinus sp. Tol-M OX=1536651 GN=JT05_06535 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-08
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 35 LTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
          +T +  PR HIDG+VWHLDV SS PGAVV  KG  VRPLKRY+S
Sbjct: 36 ITGLSPPRVHIDGEVWHLDVGSSHPGAVVGPKGWAVRPLKRYVS 79

[Close]

BLAST of CmoCh09G009300 vs. NCBI nr
Match: QCE13761.1 (hypothetical protein DEO72_LG11g759 [Vigna unguiculata])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 24  VVAILLGMVENLTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           VV   + +   +T + SPRAHIDGKVWHL VSSSPPGAVV SKG  VRPLKRY+S
Sbjct: 324 VVTQRIKVTLGITGLSSPRAHIDGKVWHLHVSSSPPGAVVCSKGWAVRPLKRYVS 378

[Close]

BLAST of CmoCh09G009300 vs. NCBI nr
Match: KAG8491524.1 (hypothetical protein CXB51_014904 [Gossypium anomalum])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 40 SPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
          SPRAHIDGKVWHLDV SSPPGAVV SKG  VRPLKRY+S
Sbjct: 57 SPRAHIDGKVWHLDVGSSPPGAVVCSKGWAVRPLKRYVS 95

[Close]

BLAST of CmoCh09G009300 vs. NCBI nr
Match: QHN95447.1 (uncharacterized protein DS421_18g609690 [Arachis hypogaea])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 31/42 (73.81%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 37  PVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           P      HIDGKVWHLDV SSPPGAVV SKG  VRPLKRY+S
Sbjct: 212 PSSRDETHIDGKVWHLDVGSSPPGAVVCSKGWAVRPLKRYVS 253

[Close]

BLAST of CmoCh09G009300 vs. NCBI nr
Match: GEU56313.1 (multi antimicrobial extrusion protein [Tanacetum cinerariifolium])

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-08
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 24  VVAILLGMVENLTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKRYIS 79
           VV+  + +   +T   SPRAHI+ KVWHLDV SS PG VV+SKG  VRPLKRY+S
Sbjct: 499 VVSQQIKVTLGITGCSSPRAHINEKVWHLDVGSSLPGVVVYSKGWAVRPLKRYVS 553

[Close]

BLAST of CmoCh09G009300 vs. NCBI nr
Match: KAG9438656.1 (hypothetical protein H6P81_021399 [Aristolochia fimbriata])

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-08
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 25  VAILLGMVENLTPVGSPRAHIDGKVWHLDVSSSPPGAVVFSKGRVVRPLKR 76
           VA  + +   +T   SPR HIDGKVWHLDV SSPPGAVV SKG  VRPLKR
Sbjct: 134 VAQRIKVTLGITGRSSPRVHIDGKVWHLDVGSSPPGAVVCSKGWAVRPLKR 184

The following BLAST results are available for this feature:

BLAST of CmoCh09G009300 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G009300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6NLE9	6.5e-11	67.27	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g759 PE=4 SV=1	[more]
A0A6L2L370	1.4e-08	60.00	Protein DETOXIFICATION OS=Tanacetum cinerariifolium OX=118510 GN=Tci_028291 PE=3...	[more]
A0A6A5L4C2	3.9e-08	76.92	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048603 PE=4 SV=1	[more]
A0A0J1FIM8	3.9e-08	68.18	Uncharacterized protein OS=Peptococcaceae bacterium CEB3 OX=999898 GN=CEB3_c0093...	[more]
A0A0A2U3F5	3.9e-08	68.18	RNAase OS=Desulfosporosinus sp. Tol-M OX=1536651 GN=JT05_06535 PE=4 SV=1	[more]

BLAST of CmoCh09G009300 vs. NCBI nr


Match Name	E-value	Identity	Description
QCE13761.1	1.3e-10	67.27	hypothetical protein DEO72_LG11g759 [Vigna unguiculata]	[more]
KAG8491524.1	1.8e-10	87.18	hypothetical protein CXB51_014904 [Gossypium anomalum]	[more]
QHN95447.1	2.1e-08	73.81	uncharacterized protein DS421_18g609690 [Arachis hypogaea]	[more]
GEU56313.1	2.8e-08	60.00	multi antimicrobial extrusion protein [Tanacetum cinerariifolium]	[more]
KAG9438656.1	2.8e-08	66.67	hypothetical protein H6P81_021399 [Aristolochia fimbriata]	[more]

BLAST of CmoCh09G009300 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G009300.1	CmoCh09G009300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0022857	transmembrane transporter activity