CmoCh09G008470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G008470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Squamosa promoter-binding protein
Location	Cmo_Chr09: 4343892 .. 4344630 (-)
RNA-Seq Expression	CmoCh09G008470
Synteny	CmoCh09G008470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATTTCCACAACCACCATCACCACCACCGCCACCGTCACGGAGCTGCCCGAGTTGGCAATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAATGAGAAGAAGAAAAGAGGGACATCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCCCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTATTTCATCCTCTTTAACAATATAAACAAGAACACTTCAGTTAACATTCAACCCTCTCTGTTTGGCTAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAATGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA

mRNA sequence

ACCATTTCCACAACCACCATCACCACCACCGCCACCGTCACGGAGCTGCCCGAGTTGGCAATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAATGAGAAGAAGAAAAGAGGGACATCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCCCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGAACACTTCAGTTAACATTCAACCCTCTCTGTTTGGCTAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAATGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA

Coding sequence (CDS)

ATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAATGAGAAGAAGAAAAGAGGGACATCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCCCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGAACACTTCAGTTAACATTCAACCCTCTCTGTTTGGCTAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAATGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA

Protein sequence

MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR

Homology

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BLAST of CmoCh09G008470 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.0e-32
Identity = 93/216 (43.06%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                   + RG
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG-----------------RDRVRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           +    RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  S----RGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFH+L EFDEAKRSCRRRLAGHNERRRKSS    GEST  +GS 
Sbjct: 121 QCS-------------RFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSG 174

Query: 181 SQSKEGHCRQLMEDQRSRIQMA-PTGSSGYKHLHIR 216
            +   G    +   +RSR++M  P  +S +K   IR
Sbjct: 181 RRGINGQV-VMQNQERSRVEMTLPMPNSSFKRPQIR 174

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BLAST of CmoCh09G008470 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-31
Identity = 88/216 (40.74%), Postives = 121/216 (56.02%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME +  + +  LKDKA    ++++++E   + E+  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG S   V S  CQ   CT +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G +
Sbjct: 121 QCS-------------RFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFS 180

Query: 181 SQSKEGHCRQLMEDQRSRI-QMAPTGSSGYKHLHIR 216
            Q        +   +R+R+ +  P  +S +K   IR
Sbjct: 181 GQ-------LIQTQERNRVDRKLPMTNSSFKRPQIR 181

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BLAST of CmoCh09G008470 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-29
Identity = 80/160 (50.00%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 36  GGGGHGGTNACTALGYYENEKK-------KRGTSVSGRGRSGSGVSSPSCQAHNCTTDLS 95
           GGGG   ++A  A G   +          +RG   +G G    G   P CQ   C  DLS
Sbjct: 61  GGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLS 120

Query: 96  EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRTLQLTFNPLCLARFHELTEFDEAK 155
           EA RY+RRHKVC+ HSK  VV+VAG+RQRFCQQCS             RFHELTEFD+AK
Sbjct: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCS-------------RFHELTEFDDAK 180

Query: 156 RSCRRRLAGHNERRRKSSAE-CQGESTNRKG-SASQSKEG 187
           RSCRRRLAGHNERRRKS+A+   GE+       A +S +G
Sbjct: 181 RSCRRRLAGHNERRRKSAADTAHGENCRHADQDAGRSHQG 207

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BLAST of CmoCh09G008470 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.3e-29
Identity = 79/166 (47.59%), Postives = 97/166 (58.43%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M+    EGK  +K        +    E   EE+D+G                E+ KK R 
Sbjct: 1   MDTSKGEGKRVIK--------LPGSQEQGEEEDDIG----------------EDSKKTRA 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            + SG+  SGS  +  SCQ  NC  +++ AK YHRRHKVCEFH+KA VV+ +G++QRFCQ
Sbjct: 61  LTPSGKRASGS--TQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSS 167
           QCS             RFHEL+EFDEAKRSCRRRLAGHNERRRKSS
Sbjct: 121 QCS-------------RFHELSEFDEAKRSCRRRLAGHNERRRKSS 127

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BLAST of CmoCh09G008470 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 75/168 (44.64%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M     EGK +L++ + +E     + E ETE+ED                + E E  ++ 
Sbjct: 3   MRRSKAEGKRSLRELSEEE-----EEEEETEDEDT---------------FEEEEALEK- 62

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
               G+  S SGV    CQ  +CT D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRFCQ
Sbjct: 63  -KQKGKATSSSGV----CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQ 122

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 169
           QCS             RFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 QCS-------------RFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

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BLAST of CmoCh09G008470 vs. ExPASy TrEMBL
Match: A0A6J1FEY0 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443461 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.3e-106
Identity = 202/215 (93.95%), Postives = 202/215 (93.95%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA
Sbjct: 121 QCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR
Sbjct: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 202

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BLAST of CmoCh09G008470 vs. ExPASy TrEMBL
Match: A0A6J1IJV6 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476934 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102
Identity = 194/215 (90.23%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAY+EGV+DDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSG GVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFDEAKRSCRRRLAGHNERRRK+SAECQGESTNRKG A
Sbjct: 121 QCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPA 180

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEG CRQLMEDQR+RIQMAPTGSSGYKHLHIR
Sbjct: 181 SQSKEGQCRQLMEDQRTRIQMAPTGSSGYKHLHIR 202

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BLAST of CmoCh09G008470 vs. ExPASy TrEMBL
Match: A0A0A0L3D9 (Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.9e-85
Identity = 171/219 (78.08%), Postives = 184/219 (84.02%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGG--TNACTALGYYENEKKK 60
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG GG  +NAC ALGY++NEKKK
Sbjct: 1   MDAKSFEGKHNFKDKT----VVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKK 60

Query: 61  RGTSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 120
           RG +VSGRG+SG  VS PSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRF
Sbjct: 61  RGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRF 120

Query: 121 CQQCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKG 180
           CQQCS             RFHELTEFDEAKRSCRRRLAGHNERRRKSSAE QGEST+RKG
Sbjct: 121 CQQCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKG 180

Query: 181 SA--SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SA  +QSKE HCRQL+EDQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 SAPQAQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 202

[Close]

BLAST of CmoCh09G008470 vs. ExPASy TrEMBL
Match: A0A5D3DWS3 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001760 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.0e-82
Identity = 166/217 (76.50%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHG-GTNACTALGYYENEKKKR 60
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG G  +NAC ALGY++NEK+KR
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGGGSNSNACNALGYFDNEKRKR 60

Query: 61  GTSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFC 120
           G +VSGRG+SG  VSSPSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFC
Sbjct: 61  GAAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFC 120

Query: 121 QQCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS 180
           QQCS             RFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGEST+RK +
Sbjct: 121 QQCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSA 180

Query: 181 -ASQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
             +QSKE HCRQL+EDQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 PQAQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 200

[Close]

BLAST of CmoCh09G008470 vs. ExPASy TrEMBL
Match: A0A1S4E4C7 (squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.7e-73
Identity = 154/216 (71.30%), Postives = 169/216 (78.24%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG                +K++G
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGG---------------GEKEKG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            +VSGRG+SG  VSSPSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFCQ
Sbjct: 61  AAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS- 180
           QCS             RFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGEST+RK + 
Sbjct: 121 QCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAP 180

Query: 181 ASQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
            +QSKE HCRQL+EDQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 QAQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 184

[Close]

BLAST of CmoCh09G008470 vs. NCBI nr
Match: XP_022937043.1 (squamosa promoter-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 394.8 bits (1013), Expect = 4.7e-106
Identity = 202/215 (93.95%), Postives = 202/215 (93.95%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA
Sbjct: 121 QCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR
Sbjct: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of CmoCh09G008470 vs. NCBI nr
Match: XP_023536105.1 (squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 3.1e-105
Identity = 200/215 (93.02%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS 
Sbjct: 121 QCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSV 180

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR
Sbjct: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of CmoCh09G008470 vs. NCBI nr
Match: KAG7024822.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.4 bits (999), Expect = 2.0e-104
Identity = 199/215 (92.56%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA
Sbjct: 167 QCS-------------RFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 226

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEGHCRQLMEDQRSRIQMAPTGSSGYK LHIR
Sbjct: 227 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKQLHIR 248

[Close]

BLAST of CmoCh09G008470 vs. NCBI nr
Match: KAG6591949.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.3 bits (991), Expect = 1.7e-103
Identity = 198/215 (92.09%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVG GGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGRGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA
Sbjct: 121 QCS-------------RFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEGHCRQLMEDQRSRIQMAPTGSSGYK LHIR
Sbjct: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKQLHIR 202

[Close]

BLAST of CmoCh09G008470 vs. NCBI nr
Match: XP_022976580.1 (squamosa promoter-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 382.5 bits (981), Expect = 2.4e-102
Identity = 194/215 (90.23%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAY+EGV+DDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSG GVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHELTEFDEAKRSCRRRLAGHNERRRK+SAECQGESTNRKG A
Sbjct: 121 QCS-------------RFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPA 180

Query: 181 SQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 216
           SQSKEG CRQLMEDQR+RIQMAPTGSSGYKHLHIR
Sbjct: 181 SQSKEGQCRQLMEDQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of CmoCh09G008470 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 138.7 bits (348), Expect = 5.7e-33
Identity = 93/216 (43.06%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                   + RG
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG-----------------RDRVRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           +    RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  S----RGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFH+L EFDEAKRSCRRRLAGHNERRRKSS    GEST  +GS 
Sbjct: 121 QCS-------------RFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSG 174

Query: 181 SQSKEGHCRQLMEDQRSRIQMA-PTGSSGYKHLHIR 216
            +   G    +   +RSR++M  P  +S +K   IR
Sbjct: 181 RRGINGQV-VMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of CmoCh09G008470 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 138.7 bits (348), Expect = 5.7e-33
Identity = 93/216 (43.06%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                   + RG
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG-----------------RDRVRG 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           +    RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  S----RGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFH+L EFDEAKRSCRRRLAGHNERRRKSS    GEST  +GS 
Sbjct: 121 QCS-------------RFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSG 174

Query: 181 SQSKEGHCRQLMEDQRSRIQMA-PTGSSGYKHLHIR 216
            +   G    +   +RSR++M  P  +S +K   IR
Sbjct: 181 RRGINGQV-VMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of CmoCh09G008470 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-32
Identity = 88/216 (40.74%), Postives = 121/216 (56.02%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME +  + +  LKDKA    ++++++E   + E+  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG S   V S  CQ   CT +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA 180
           QCS             RFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G +
Sbjct: 121 QCS-------------RFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFS 180

Query: 181 SQSKEGHCRQLMEDQRSRI-QMAPTGSSGYKHLHIR 216
            Q        +   +R+R+ +  P  +S +K   IR
Sbjct: 181 GQ-------LIQTQERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of CmoCh09G008470 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-28
Identity = 75/168 (44.64%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M     EGK +L++ + +E     + E ETE+ED                + E E  ++ 
Sbjct: 3   MRRSKAEGKRSLRELSEEE-----EEEEETEDEDT---------------FEEEEALEK- 62

Query: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
               G+  S SGV    CQ  +CT D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRFCQ
Sbjct: 63  -KQKGKATSSSGV----CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQ 122

Query: 121 QCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 169
           QCS             RFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 QCS-------------RFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of CmoCh09G008470 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 64/122 (52.46%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 60  GTSVSGRG----RSGSGVSSPS--CQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAG 119
           G ++ G G    + G G+ S +  CQ  NC  DLS+ K YHRRHKVCE HSKA   +V G
Sbjct: 103 GNNIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGG 162

Query: 120 IRQRFCQQCSRTLQLTFNPLCLARFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGES 176
           I QRFCQQCS             RFH L EFDE KRSCRRRLAGHN+RRRK++ +  G  
Sbjct: 163 IMQRFCQQCS-------------RFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNG 211

The following BLAST results are available for this feature:

BLAST of CmoCh09G008470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7A9	8.0e-32	43.06	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q9S758	3.0e-31	40.74	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q6Z461	2.2e-29	50.00	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q38741	8.3e-29	47.59	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
P93015	4.5e-27	44.64	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]

BLAST of CmoCh09G008470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEY0	2.3e-106	93.95	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJV6	1.2e-102	90.23	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3D9	4.9e-85	78.08	Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=...	[more]
A0A5D3DWS3	1.0e-82	76.50	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E4C7	5.7e-73	71.30	squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851...	[more]

BLAST of CmoCh09G008470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937043.1	4.7e-106	93.95	squamosa promoter-binding protein 1-like [Cucurbita moschata]	[more]
XP_023536105.1	3.1e-105	93.02	squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7024822.1	2.0e-104	92.56	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
KAG6591949.1	1.7e-103	92.09	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
XP_022976580.1	2.4e-102	90.23	squamosa promoter-binding protein 1-like [Cucurbita maxima]	[more]

BLAST of CmoCh09G008470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	5.7e-33	43.06	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	5.7e-33	43.06	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	2.2e-32	40.74	squamosa promoter binding protein-like 5	[more]
AT2G33810.1	3.2e-28	44.64	squamosa promoter binding protein-like 3	[more]
AT3G60030.1	1.1e-25	52.46	squamosa promoter-binding protein-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 136..164 e-value: 6.2E-9 score: 36.1 coord: 78..128 e-value: 1.7E-17 score: 63.5
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 75..165 score: 28.256384
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 68..152 e-value: 5.4E-31 score: 108.5
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 76..168
None	No IPR available	PIRSR	PIRSR037575-1	PIRSR037575-1	coord: 67..166 e-value: 8.8E-39 score: 129.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..80
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 11..215
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 11..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G008470.1	CmoCh09G008470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding