CmoCh09G008430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G008430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PRA1 family protein
Location	Cmo_Chr09: 4317947 .. 4320428 (+)
RNA-Seq Expression	CmoCh09G008430
Synteny	CmoCh09G008430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTATATATGACCCTTTTGTCTCTTCTACTGATCCCAAATCCGTGTTTTTTGTTATTGTGATCAGGAATGAGTTTCTCATCCAATCCACTCTCCCTCAGCGTTCCGGACGCCGCCTTCGATTCATGGCTTCGCGATTCCGGCTACCTCGAGATTCTCGATCAACGCACCTCCGACCTCCACCGCCATTCCTCCGCCACTGCAGCCACTGCCCCCACCAGACCCACCCCCATCGCCGTCGCTCCTTTAGCCACAGGTTTCTTCATCTCCTTCTTCTCTCGTATCGGAACCCTTCTCTCCGTTTTCACTCTTAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTGCCGGCCCGACACCCTCCTGGACTTCCGGATTTGTTGGGTTTTTTGAATCGTACTCGTTTCCTTCCTCGCCGGCTCAAGCTCGTCTCAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCATCCTTATTTGTTCTCTTTTTTGTCTGCACGCTGTATGTTCATCTCGTTCTGTCCTTCGTTATTTGTGTTTCCCATTTATTTGGAAGGAATGAACATAGAAATTGTTGGGTAGAGAAGAGATTTATGGCAATTTCCCGACCTTTATTTTAGCAAATTCTTCTTGATGTTTATGTTCCGTAGTGGATGATTTCAGGTACCAGATGCCTCTTGCTCTTCTTGGATTAGTATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTGGTGATAGATGGGGATTGGACCAATATCCAGTTGTTTGGCAGTGTTTGGTTCGCATTGCTCAATGTGGTAAGTTATTGACGATTTAAAACTGTGTTTGTTTGCACAACTGAGATGTTCATCCCAATTCTTATCCTTGAACAAGTCTTGATTTGTTGTTAATCTTTTTCATTGCTGCTTGATGAATGGTTAGTGTTTTGTCTGTTCTATTTGGTTGAGATTACAAGCTCTAAGGCTATCGTTTTCTCGATTCAAGATGACCGAGAACTTTGGCTCGGTTGTCCTGAGTTCTTGAAATGGAGCCAAGGCCATGTTTTTGGTCATGTGTGTACTGCAAGTGTAATTGTTCAAGCCTACTGCTAGTAGGTATTGTCCTCTTTGGGCTTTTTCTTTTGGATTTTCCTTCAAGGTTTTCAAAACACGTCTCCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTCCGTTCCCCTCTCCAACCAATGTGGGATCTCACAATCCACCCCCTCTCGGGACTTAGTGTCCTCGCTAGCACATTGCCGAGTGTCCACCTCCCCTTCAGGGCTCAACTTCCTCGCTAGCATACCGCTTGGAGTATGACTCTGATCCCATTTGTAACAGCCCAAGCCCATCACTAGTAAATACTGTCCTCTTTGAGCTTTCCCTTTCAGGCTTCTCCTCAAGGTTTTTAAAACACTTCTGTTAGGGAGAGGTTTCTACACTCTTATAAAGAATGCTCCTCTCCAACCGATGTGTGATCTCGCATGTTTGATCCTCGAAAATTTTTAGGTAGTACTACAAATTGCTATTTGGAACCTTTGGGGTTCTTTGTTTTGTTGGATCCCGCTGCATGCATTTATCAATCAATTCCTTGTTAATTACCATGCTCAAGATCACAATCATTTGAACTGCTATTGTTAGTTAATTACACAGCAATCTTTTTTACCCCATTCTTTCTTCCAAATACTTAAACAAATATAATGTTCTGCAGTGACTGTCATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCACTTGGCGTTGGATATACAGGTGACTACACAACATTTCTAGCCTCTGCTACAAAGTTCATCATAACCAGTTGTTCTAATCGTTTGATATCTCGACAGGCATGATTTTGCACGCTGCATTTCGGAAGCTAACTCTCACGAGGCCCCCGTCTTCCATAAATCGAAAATAGCCCATTACAGGTACGATATTTATACACTCCTCTACGTAATTATGTTCAAGTAAGGTACCAACATCTGATTCTATGATAAGCCTGAAAAGTGCTGGTAATGCTGATTGCTTGAAAGCAGTCCTTTGCTGTAAAATTCATGTTATGGCAATGGGGATCTCTGACCATCCTATTGCCTAAGAGTTACATGGTTTCATCTTCTTGTGTTAGAGGGTAGACCCAAGTTACAAGCCAAGCCCAAATCATGTTTTAGTTAGTTTATTCACTTATTTGTTGAATTTATGTATGGTTAGTTTGTAGGTTGTACTATTATTACATGAAATTTTGTTCTAGCTAATGATTTGTACTACAAATTTAGCATTTTGTACTCAAATTTTGTATTAATGAGAGTTCATCAGATTTTAGATGGAGAAAGCTCTGATTCTTCATGTAATATCATTGAAAACCTCAAGTTTGTGTCTTGGTTGCATGTTAATTGTATAGTCTGCACCTTCTTTTGTTAAAGAGGGCTATGATGCAGAAGAATATGCTGCATTTTG

mRNA sequence

CCATTATATATGACCCTTTTGTCTCTTCTACTGATCCCAAATCCGTGTTTTTTGTTATTGTGATCAGGAATGAGTTTCTCATCCAATCCACTCTCCCTCAGCGTTCCGGACGCCGCCTTCGATTCATGGCTTCGCGATTCCGGCTACCTCGAGATTCTCGATCAACGCACCTCCGACCTCCACCGCCATTCCTCCGCCACTGCAGCCACTGCCCCCACCAGACCCACCCCCATCGCCGTCGCTCCTTTAGCCACAGGTTTCTTCATCTCCTTCTTCTCTCGTATCGGAACCCTTCTCTCCGTTTTCACTCTTAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTGCCGGCCCGACACCCTCCTGGACTTCCGGATTTGTTGGGTTTTTTGAATCGTACTCGTTTCCTTCCTCGCCGGCTCAAGCTCGTCTCAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCATCCTTATTTGTTCTCTTTTTTGTCTGCACGCTGTACCAGATGCCTCTTGCTCTTCTTGGATTAGTATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTGGTGATAGATGGGGATTGGACCAATATCCAGTTGTTTGGCAGTGTTTGGTTCGCATTGCTCAATGTGTGACTGTCATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCACTTGGCGTTGGATATACAGGCATGATTTTGCACGCTGCATTTCGGAAGCTAACTCTCACGAGGCCCCCGTCTTCCATAAATCGAAAATAGCCCATTACAGGTACGATATTTATACACTCCTCTACGTAATTATGTTCAAGTAAGGTACCAACATCTGATTCTATGATAAGCCTGAAAAGTGCTGGTAATGCTGATTGCTTGAAAGCAGTCCTTTGCTGTAAAATTCATGTTATGGCAATGGGGATCTCTGACCATCCTATTGCCTAAGAGTTACATGGTTTCATCTTCTTGTGTTAGAGGGTAGACCCAAGTTACAAGCCAAGCCCAAATCATGTTTTAGTTAGTTTATTCACTTATTTGTTGAATTTATGTATGGTTAGTTTGTAGGTTGTACTATTATTACATGAAATTTTGTTCTAGCTAATGATTTGTACTACAAATTTAGCATTTTGTACTCAAATTTTGTATTAATGAGAGTTCATCAGATTTTAGATGGAGAAAGCTCTGATTCTTCATGTAATATCATTGAAAACCTCAAGTTTGTGTCTTGGTTGCATGTTAATTGTATAGTCTGCACCTTCTTTTGTTAAAGAGGGCTATGATGCAGAAGAATATGCTGCATTTTG

Coding sequence (CDS)

ATGAGTTTCTCATCCAATCCACTCTCCCTCAGCGTTCCGGACGCCGCCTTCGATTCATGGCTTCGCGATTCCGGCTACCTCGAGATTCTCGATCAACGCACCTCCGACCTCCACCGCCATTCCTCCGCCACTGCAGCCACTGCCCCCACCAGACCCACCCCCATCGCCGTCGCTCCTTTAGCCACAGGTTTCTTCATCTCCTTCTTCTCTCGTATCGGAACCCTTCTCTCCGTTTTCACTCTTAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTGCCGGCCCGACACCCTCCTGGACTTCCGGATTTGTTGGGTTTTTTGAATCGTACTCGTTTCCTTCCTCGCCGGCTCAAGCTCGTCTCAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCATCCTTATTTGTTCTCTTTTTTGTCTGCACGCTGTACCAGATGCCTCTTGCTCTTCTTGGATTAGTATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTGGTGATAGATGGGGATTGGACCAATATCCAGTTGTTTGGCAGTGTTTGGTTCGCATTGCTCAATGTGTGACTGTCATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCACTTGGCGTTGGATATACAGGCATGATTTTGCACGCTGCATTTCGGAAGCTAACTCTCACGAGGCCCCCGTCTTCCATAAATCGAAAATAG

Protein sequence

MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPLATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPVVWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK

Homology

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BLAST of CmoCh09G008430 vs. ExPASy Swiss-Prot
Match: Q8LFP1 (PRA1 family protein H OS=Arabidopsis thaliana OX=3702 GN=PRA1H PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.0e-68
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATA-----ATAPTRPTPI 60
           M+FS NPLSLSVPD AF+SWLRDSGYLE+LD RTS     +S++A     A A +  +  
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 61  AVAPLATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSS 120
            V+ +  GFF S  SR+ T+ S+ T+NPF+KLSA DF+G T  WT+GF+G  +SYSFPSS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSS 120

Query: 121 PAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGL 180
             QAR+RVHEN KR+ARNYA+LF++FF C LYQMPLAL+GL+  LALW++ K+C D+W  
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKF 180

Query: 181 DQYPVVWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPS 234
           D++P + +  + I QC T ++L F N QMA+F AL + Y+ MILHA FRKLT ++ P+
Sbjct: 181 DRHPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPT 238

[Close]

BLAST of CmoCh09G008430 vs. ExPASy TrEMBL
Match: A0A6J1F5I6 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442551 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.5e-130
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CmoCh09G008430 vs. ExPASy TrEMBL
Match: A0A6J1IMK5 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111476927 PE=3 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.2e-128
Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTP AVAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPTAVAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRW LD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWALDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CmoCh09G008430 vs. ExPASy TrEMBL
Match: A0A1S3CLE4 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103501773 PE=3 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.4e-117
Identity = 216/238 (90.76%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS   A  PTRPTP A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS---AAPPTRPTPTAAAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFIS FSRI TLLSVFTLNPF+KLSAADF+GPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRIATLLSVFTLNPFSKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFC DRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           +WQCLVRIAQC T IILLFSNFQMAIFCALG+GYTGMILHAAFRKLT T+PPS+I+RK
Sbjct: 181 LWQCLVRIAQCATAIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPPSTISRK 235

[Close]

BLAST of CmoCh09G008430 vs. ExPASy TrEMBL
Match: A0A0A0L4P4 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G630550 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.6e-116
Identity = 213/238 (89.50%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS   A  P RPTP A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS---AAPPARPTPTAAAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFIS FSRI TLLS+FTLNPFAKLSAADF+GPTPSWT+GFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFC DRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           +WQCLVRIAQC TVIILLFSNFQMAIFCALG+GYTGMILHAAFRKLT T+P S+++RK
Sbjct: 181 LWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 235

[Close]

BLAST of CmoCh09G008430 vs. ExPASy TrEMBL
Match: A0A5A7VNH6 (PRA1 family protein H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001700 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 9.0e-112
Identity = 216/275 (78.55%), Postives = 225/275 (81.82%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS   A  PTRPTP A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS---AAPPTRPTPTAAAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFIS FSRI TLLSVFTLNPF+KLSAADF+GPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRIATLLSVFTLNPFSKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCT----------------------------------- 180
           LRVHENAKRYARNYASLFVLFFVCT                                   
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYVLLFLLLIVSIDGLFAADSGLTLKLLYFLEVVN 180

Query: 181 --LYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPVVWQCLVRIAQCVTVIILLFSNFQ 239
             LYQMPLALLGL+SCLALWDIVKFC DRWGLD+YPV+WQCLVRIAQC T IILLFSNFQ
Sbjct: 181 WVLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCLVRIAQCATAIILLFSNFQ 240

[Close]

BLAST of CmoCh09G008430 vs. NCBI nr
Match: XP_022935725.1 (PRA1 family protein H-like [Cucurbita moschata] >XP_022935726.1 PRA1 family protein H-like [Cucurbita moschata] >XP_022935727.1 PRA1 family protein H-like [Cucurbita moschata] >XP_022935728.1 PRA1 family protein H-like [Cucurbita moschata])

HSP 1 Score: 472.6 bits (1215), Expect = 2.0e-129
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CmoCh09G008430 vs. NCBI nr
Match: KAG6591944.1 (PRA1 family protein H, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024817.1 PRA1 family protein H [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469.2 bits (1206), Expect = 2.2e-128
Identity = 236/238 (99.16%), Postives = 237/238 (99.58%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAA APTRPTPIAVAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPTPIAVAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CmoCh09G008430 vs. NCBI nr
Match: XP_023535020.1 (PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535022.1 PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535023.1 PRA1 family protein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTP AVAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPTAVAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           VWQCLVRIAQCVTVIILLFSNFQMAIFCAL VGYTGMILHAAFRKLTLTRPPSSINRK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALAVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CmoCh09G008430 vs. NCBI nr
Match: XP_022976569.1 (PRA1 family protein H-like [Cucurbita maxima] >XP_022976570.1 PRA1 family protein H-like [Cucurbita maxima] >XP_022976572.1 PRA1 family protein H-like [Cucurbita maxima] >XP_022976573.1 PRA1 family protein H-like [Cucurbita maxima])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTP AVAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPTAVAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRW LD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWALDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CmoCh09G008430 vs. NCBI nr
Match: XP_038898448.1 (PRA1 family protein H [Benincasa hispida])

HSP 1 Score: 446.4 bits (1147), Expect = 1.5e-121
Identity = 218/238 (91.60%), Postives = 231/238 (97.06%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60
           MSFS NPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSA AA APTRPTP A APL
Sbjct: 1   MSFSPNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAPAAAAPTRPTPAAAAPL 60

Query: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120
           ATGFFIS FSR+GTLLS+FTLNPFAKLSAADF+GPTPSWTSGFVGFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRMGTLLSIFTLNPFAKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWD+VKFCGDRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDVVKFCGDRWGLDKYPV 180

Query: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 239
           +WQCLVRIAQCVTVIILLF NFQMAIFCALG+GYTGMILHAAFRKLTLT+PP++++RK
Sbjct: 181 LWQCLVRIAQCVTVIILLFCNFQMAIFCALGIGYTGMILHAAFRKLTLTKPPAAVSRK 238

[Close]

BLAST of CmoCh09G008430 vs. TAIR 10
Match: AT4G27540.1 (prenylated RAB acceptor 1.H )

HSP 1 Score: 260.4 bits (664), Expect = 1.4e-69
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATA-----ATAPTRPTPI 60
           M+FS NPLSLSVPD AF+SWLRDSGYLE+LD RTS     +S++A     A A +  +  
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 61  AVAPLATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSS 120
            V+ +  GFF S  SR+ T+ S+ T+NPF+KLSA DF+G T  WT+GF+G  +SYSFPSS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSS 120

Query: 121 PAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGL 180
             QAR+RVHEN KR+ARNYA+LF++FF C LYQMPLAL+GL+  LALW++ K+C D+W  
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKF 180

Query: 181 DQYPVVWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPS 234
           D++P + +  + I QC T ++L F N QMA+F AL + Y+ MILHA FRKLT ++ P+
Sbjct: 181 DRHPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPT 238

The following BLAST results are available for this feature:

BLAST of CmoCh09G008430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFP1	2.0e-68	55.04	PRA1 family protein H OS=Arabidopsis thaliana OX=3702 GN=PRA1H PE=2 SV=1	[more]

BLAST of CmoCh09G008430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5I6	9.5e-130	100.00	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442551 PE=3 SV=1	[more]
A0A6J1IMK5	5.2e-128	98.74	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111476927 PE=3 SV=1	[more]
A0A1S3CLE4	2.4e-117	90.76	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103501773 PE=3 SV=1	[more]
A0A0A0L4P4	4.6e-116	89.50	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G630550 PE=3 SV=1	[more]
A0A5A7VNH6	9.0e-112	78.55	PRA1 family protein H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]

BLAST of CmoCh09G008430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935725.1	2.0e-129	100.00	PRA1 family protein H-like [Cucurbita moschata] >XP_022935726.1 PRA1 family prot...	[more]
KAG6591944.1	2.2e-128	99.16	PRA1 family protein H, partial [Cucurbita argyrosperma subsp. sororia] >KAG70248...	[more]
XP_023535020.1	1.1e-127	98.74	PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535022.1 PRA1 fam...	[more]
XP_022976569.1	1.1e-127	98.74	PRA1 family protein H-like [Cucurbita maxima] >XP_022976570.1 PRA1 family protei...	[more]
XP_038898448.1	1.5e-121	91.60	PRA1 family protein H [Benincasa hispida]	[more]

BLAST of CmoCh09G008430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27540.1	1.4e-69	55.04	prenylated RAB acceptor 1.H	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 106..225 e-value: 7.4E-15 score: 54.8
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 1..230
None	No IPR available	PANTHER	PTHR19317:SF1	PRA1 FAMILY PROTEIN H	coord: 1..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G008430.1	CmoCh09G008430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane