CmoCh09G007630 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G007630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionReceptor-like protein kinase-related family protein
LocationCmo_Chr09: 3863711 .. 3866750 (+)
RNA-Seq ExpressionCmoCh09G007630
SyntenyCmoCh09G007630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGGGTCTACTGGTAGGTTTAAACATCTAATATTTTAAGTTGAGGTTATAATGAGGTATGCTGAAGTTGACAAGCATACAAATAACAAAAATTATTCAATCTTAAAATATAATAGTGAAAAGCAATACTAAATATTGGTCCTTCGGACACATTCCATACCTTACAACAATAAATGGAAAAACAACAGCAAATTACTAAAGCAAACACACACAACCCCCAAAGGGAGAGTGGTTCTTTTTTTCTTTTTGTGAGGGGGGAGGGGGTGTGGAAAGAAAAAGTTGCATTATTCAAATTTTGTCACTACTGCATGAAAACCCTTGAATGAAAGGCCATCAAGAGAGTGAAATGTAACAGTAACTCCCTTTGATTCATGCCCTCACACTGCCCTGACAGCTTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAACCGACATGTAGTCTCCAAACACAAACTTAGGATATCCTTCTTCCACCTCCTGGTTTGCTTTGTCCACCAACTGTGCTGCAGGAGCTATGGTAGCTTCCAGTGATGGGTTGTAAAACGAAGCTATTGATCTCCTGTTCCCATTTGGGGTGGCCAAAATCCGGTGCCAAACACTCTTGTATTTCCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTAATGACTATGGAGTTGTGTAATGGCTGGACATCTATCCACTGCCCGTCTTTCAGGATTTGAAGGCCTCCCACCTGGTCATCTTGGAAGAGCAAGATGACACCGCCAGCATCGGTGTGGGCACGAAGGCCATTCACCAGCTCCGGGTGTGGGCATGGTGGGTAGTGGCTGACTTTGGTGCCAAAGAAGGCCTTTTCCAGCCCTTCGCCACCATTGAAGGCAGCCTTAATGTATCCTTCAGGTAAACCTAAGTTCTCATCCATCAATGCCATCACCTTTTCAGCTAGCTTCTTCAGCTCCGATCTGTATTCTGCCATGGTTTCCCTGCCACAATTGGATTCATAAACATAAATTCATTCCTGTTCTTGAGAAAAGATGATTTCATGGTATATTTTCACGGATTTTTCATGAAATAACAGAAAGTTTGTAGTGTAGATGTATATGCTTACTTGAATCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCACCGCTCTTGTTTTCCAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTCTTGAAACTTTCTTCTCTTTCCAGCTTGTAACACTCTGAACAAACCCTCTTTACCCTCTCTAGGAGCTCTTCAGGAATCCCATGGTTCACCAGCTGAAATTCAAGTAACACATTTATTCAATCAACCATCATAAAAACATTTAATTACTGCTCTTGCATGAAAACGTTACTCGAGTTAATTTTAGGATATCTAGAAAAGAGACCCCACTTTAGAAACAAAGAATGATTGCTCTTGCACTCGAACATTACTCGTGGAAATAGGATGTCTAGAAACACCACTCTCAAAAGTACTTTTCTTTTGACTATATTACGGGCATGTTTGGAAATGATTTTGAAATGGTTAAGCATTTAACCACTCAAAATCAATTTAATGAATGATTTTACACCTTTTAACTACAAAATCACTTCCAAACATGTTCTTCAAATCTACTTGAATAGCATAACTAACTAGTCGGGAAGTACCTGAAAGAATCCCCATTCTTCACAGCCATTAGCTATCTGATTCAATGTCTTGGCCCTTTCTTCTCCATCAAGCTTTGAGAAATCAATGACTGGAATTGCCATTAGAAGAGAGAGAGAGATGGCTTAAGGTAATGAAGTTGATCAGAGAGTAGTAGTTTATGCTGATGGGTTTAGAAAGGAAAGGGCTGCCCCTATTTATAAGTGTTTCCCTCCAACTTGATGTTAAAACCCTCTAGTAATTAACTCCCTTTTCTTTTAAAACAAGTCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCGAAATGGGACGGCGACTTTTTTAGTAAAATATTGTTCGAAAAGTCAATGACCTCTCAAATTCTACCTTTGTTTGCAACACATTACAGAAGCACTCACCTCAGAAACTATTTAATTAATTGGTTTTCCGTTGAGTGTTCATTCATTAATCATTGCCGACTAGTTTTCATTGGCTGTTATCTCTTAAACTTCCAGGCTACCTATTATGGAGTTACATACCTATTCATACCTTAGGTTTGTAATCATTTTATAATGATCTGATGGTTAGATTATATCTCTCCCATTTTATTTTTATAACTACTTTAATATATATATATTATGTTATTATACTTTGATGGTCGTATGGTCGTGTATTTTGTTTTCCAATTTAGTCCCTCTCATTTTATAAATGACTGCTTGTGTTTAGATTGACGATGATTAATGACATGGTTCTTGTTAGGATTGTTTTTGTTCAATGTGAAATAGGGTGATTCTAATGTTTGACCTTTTGGTTAAAGGTATAACATTGTTAGTCGAGTTATATTCACGTTGGATTTCTTTAGTGTGTATTTTGACTTTAGGTAGTTTAATTCATTCTTTATAGTTTATCGTCAACCAAAGGAAGGGTGTGGCTGTAA

mRNA sequence

ATGGATTCGGGTCTACTGGATTTGAAGGCCTCCCACCTGGTCATCTTGGAAGAGCAAGATGACACCGCCAGCATCGGTGTGGGCACGAAGGCCATTCACCAGCTCCGGGTGTGGGCATGGTGGGTAGTGGCTGACTTTGGTGCCAAAGAAGGCCTTTTCCAGCCCTTCGCCACCATTGAAGGCAGCCTTAATGTATCCTTCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCACCGCTCTTGTTTTCCAGCAAATCATTCAGGAGCTTCACAGTTTATCGTCAACCAAAGGAAGGGTGTGGCTGTAA

Coding sequence (CDS)

ATGGATTCGGGTCTACTGGATTTGAAGGCCTCCCACCTGGTCATCTTGGAAGAGCAAGATGACACCGCCAGCATCGGTGTGGGCACGAAGGCCATTCACCAGCTCCGGGTGTGGGCATGGTGGGTAGTGGCTGACTTTGGTGCCAAAGAAGGCCTTTTCCAGCCCTTCGCCACCATTGAAGGCAGCCTTAATGTATCCTTCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCACCGCTCTTGTTTTCCAGCAAATCATTCAGGAGCTTCACAGTTTATCGTCAACCAAAGGAAGGGTGTGGCTGTAA

Protein sequence

MDSGLLDLKASHLVILEEQDDTASIGVGTKAIHQLRVWAWWVVADFGAKEGLFQPFATIEGSLNVSFRNVGGPFVVIMEKEDIFPIKIFQLLTALVFQQIIQELHSLSSTKGRVWL
Homology
[Close]
BLAST of CmoCh09G007630 vs. ExPASy TrEMBL
Match: A0A5A7Q771 (Receptor-like protein kinase-related family protein OS=Striga asiatica OX=4170 GN=STAS_16973 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 7   DLKASHLVILEEQDDTASIGVGTKAIHQLRVWAWWVVADFGAKEGLFQPFAT-IEGSLNV 66
           +L+A HL+ILE++DD  S+ VG K I+   + AW VVAD GA+EGL       +EG ++V
Sbjct: 59  NLEARHLIILEQEDDPTSVCVGPKPIYPFGLGAWRVVADLGAEEGLVTSLGPGVEGPIDV 118

[Close]
BLAST of CmoCh09G007630 vs. NCBI nr
Match: KAG7031658.1 (hypothetical protein SDJN02_05699, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 88/103 (85.44%), Postives = 92/103 (89.32%), Query Frame = 0 

Query: 7   DLKASHLVILEEQDDTASIGVGTKAIHQLRVWAWWVVADFGAKEGLFQPFATIEGSLNVS 66
           DLKASHLV+LEEQDDT SIGV T+A+HQLRVWAWWVV DFG+KEGL QP ATIEGSL VS
Sbjct: 64  DLKASHLVVLEEQDDTTSIGVRTEAVHQLRVWAWWVVTDFGSKEGLVQPIATIEGSLYVS 123

Query: 67  FRNVGGPFVVIMEKEDIFPIKIFQLLTALVFQQIIQELHSLSS 110
            RNVGGPFVVIMEKEDIFPIKIFQLL AL FQQIIQELH  SS
Sbjct: 124 LRNVGGPFVVIMEKEDIFPIKIFQLLAALAFQQIIQELHRSSS 166

[Close]
BLAST of CmoCh09G007630 vs. NCBI nr
Match: RZR97316.1 (hypothetical protein BHM03_00026470 [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 7  DLKASHLVILEEQDDTASIGVGTKAIHQLRVWAWWVVADFGAKEG 52
          DL+A++L++LEE+DD ASIGVG +A++++R WAW VVA     EG
Sbjct: 43 DLEATNLIVLEEEDDAASIGVGAEAVNEVRAWAWRVVAHLRPDEG 87

[Close]
BLAST of CmoCh09G007630 vs. NCBI nr
Match: GER40307.1 (receptor-like protein kinase-related family protein [Striga asiatica])

HSP 1 Score: 57.4 bits (137), Expect = 9.6e-05
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 7   DLKASHLVILEEQDDTASIGVGTKAIHQLRVWAWWVVADFGAKEGLFQPFAT-IEGSLNV 66
           +L+A HL+ILE++DD  S+ VG K I+   + AW VVAD GA+EGL       +EG ++V
Sbjct: 59  NLEARHLIILEQEDDPTSVCVGPKPIYPFGLGAWRVVADLGAEEGLVTSLGPGVEGPIDV 118

The following BLAST results are available for this feature:
BLAST of CmoCh09G007630 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G007630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7Q7714.7e-0545.90Receptor-like protein kinase-related family protein OS=Striga asiatica OX=4170 G... [more]
BLAST of CmoCh09G007630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031658.11.7e-4185.44hypothetical protein SDJN02_05699, partial [Cucurbita argyrosperma subsp. argyro... [more]
RZR97316.11.5e-0555.56hypothetical protein BHM03_00026470 [Ensete ventricosum][more]
GER40307.19.6e-0545.90receptor-like protein kinase-related family protein [Striga asiatica][more]
BLAST of CmoCh09G007630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G007630.1CmoCh09G007630.1mRNA