CmoCh09G007580 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G007580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 3838284 .. 3840113 (+)
RNA-Seq ExpressionCmoCh09G007580
SyntenyCmoCh09G007580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATCCACTCGAGAGCGGCGGTTCCAAAAGACATCATCGATGCCTTTCGACCCTTTTCTGTGCTTTATCCATCCGCTGAGCAGTAACCCATTTGCCAATTTGCGACCCCTTCAATGGTAACTATCTCTCTCTTTCCCTCTCTTTTTTCCCTTTTGGATTCACCCTTTAATGGGGTTTTGAGCTCTTTCTGTATTGTAACCTTGATTAAAGTGTTCATGGGGTTTTCTTTTCAGCCCACGAATCTATAAAGGCCTGCGTGTCTTTATTGCCTTTTGTTCTTCTTGTTCTTCTTGTTCTTCAGGATTGTGAAGAACTGGATGGTTTCTGGGTCTCTGGCTTGTGGGTATGTGCTAATTGTTCTCGTTCTGGTTCGTTGTTTATGATAGATTCATAGTGTTTTTATGATTGTTGTTGAATAGGTGTTGGAATCTGATTATGGAGATGTTCTTATCTGGGTCTTGATTTGGTTGATTTTGGAGTGTGTTCTGAAATTTGTTTGTGGTGTTCTTCTGTAATTTTTCGTTTTGGCATGCGTTTTGGAGCTTTTGTTGTTGAAAATTGTGTGCAATTCTGTGATGGCTTGAAATGCTATGTAATGGAAGCTTAGCTTGGTGCTTATGACGCGCTACAGAACCTCCACCGTGTTGGGGGACCAAGTAGCTAGCGGCATAGGAGCCGACTCAGTGTCAGCAGCTTTGTGCCGCACTGGAGTAATCCAATACCACTTCTCTGTTCATTTCCAATACTCCTCCTCGTTTTGAGACATTTTCACTTTGGAGTGGTTTATCCGTGGACACCCGTAGGGGCTCTACTGTCGCTTGCTTTCATGTACACGTCTTACCTCTTCCCTACAACCCATGACATACTCGGCTTTCTATCCATGCTTCCTCCAATACTGGAATAGGGTCATTCCTTTACTTTAAGCTTAGGCTGGCCTTAGTGAAAAAATCCGGCATCGCCAAACGAGTGGCGGATTTTCACTCATGTGAATGAAAAATGTGACCCGATTCCTTTGATCGGTCATTTTTTGGGCAGTATGTTCAGTCAAAGTGAGAGAAGTGAGTCGTGAAGGAGTGACACGTCGGTTGGGGAGGAGAATGAAACATTTTTTATAAGGGTGTGAAAATCTTTCCCTAGTAGACGTGTTTTAAAACCATGAGGCTGACAACGATGCGTAATGGGCAAAAACGGATAAGTCTACTAGCGGTGGGCTTGGGCTGTTACAAATAGTATTAGAGCTAGACACCGAGTTGTATGCTAGTGAGGACGCTGGGCTCCCAAAGGGGGTGGATTATGAGATTTCACATCGGTTGGAGAGGGGAATAAAACTATAACAGTCCAAGTCCACCACTAACAGATATTATCTGCTTTTGTCCATTAAGTATCGCCGTCAGCCTCACAATTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACTCTTATAAGAAATGTTTCGTTTCCCTCTCCAACCGACGTGGGATCTCAAAGAAACATTCCTTATAAGAGGGTGGAAACTCTCCCTAGTAGACACGTTTTAAAACTGTGAGGCTGACGACGATGCATGAAGGGCCAAAACGGACAATATCTGTTAACGGTGGGCTTCGGCCGTTACAATCAATTTCCTTTTTGTATATGGATTGAAGCTTCATTGATCTATGACTCCATGAACTCCTCGTCTGATATTCATCGTTTGTCTTCTTTCGGGAAATCGAGTTGTCTTTTGGATAAAACACGAGTAATCGTGGTTGATACCGATTGTTTTCTGTTACGATCATTGCAGGCTTATAGCTTAATCGTTTCCTGCAGATCCGACGTGATTTCATAA

mRNA sequence

ATGAGCATCCACTCGAGAGCGGCGGTTCCAAAAGACATCATCGATGCCTTTCGACCCTTTTCTGTGCTTTATCCATCCGCTGAGCAGATTGTGAAGAACTGGATGGTTTCTGGGTCTCTGGCTTGTGGGTATGTGCTAATTGTTCTCGTTCTGGCTTATAGCTTAATCGTTTCCTGCAGATCCGACGTGATTTCATAA

Coding sequence (CDS)

ATGAGCATCCACTCGAGAGCGGCGGTTCCAAAAGACATCATCGATGCCTTTCGACCCTTTTCTGTGCTTTATCCATCCGCTGAGCAGATTGTGAAGAACTGGATGGTTTCTGGGTCTCTGGCTTGTGGGTATGTGCTAATTGTTCTCGTTCTGGCTTATAGCTTAATCGTTTCCTGCAGATCCGACGTGATTTCATAA

Protein sequence

MSIHSRAAVPKDIIDAFRPFSVLYPSAEQIVKNWMVSGSLACGYVLIVLVLAYSLIVSCRSDVIS
Homology
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BLAST of CmoCh09G007580 vs. NCBI nr
Match: KAG7024731.1 (hypothetical protein SDJN02_13549, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 6.8e-24
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MSIHSRAAVPKDIIDAFRPFSVLYPSAEQIVKNWMVSGSLACGYVLIVLVLAYSLIVSCR 60
          MSIHSRAAVPKDIIDAFRPFSVL PSAEQIVKNWMVS SLACGYVLIVLVLAYSLIVSCR
Sbjct: 1  MSIHSRAAVPKDIIDAFRPFSVLSPSAEQIVKNWMVSESLACGYVLIVLVLAYSLIVSCR 60

Query: 61 SDVIS 66
          SDVIS
Sbjct: 61 SDVIS 65

The following BLAST results are available for this feature:
BLAST of CmoCh09G007580 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G007580 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G007580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024731.16.8e-2496.92hypothetical protein SDJN02_13549, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh09G007580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G007580.1CmoCh09G007580.1mRNA