CmoCh09G006570 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G006570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L13, chloroplastic-like
LocationCmo_Chr09: 3296461 .. 3299749 (-)
RNA-Seq ExpressionCmoCh09G006570
SyntenyCmoCh09G006570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCGGGTTTCTCATTTTCGTATTCACAAAAGGTAGTCTTATCCGCTATCCATAGCAGAAATTCGCTACAATGGCGATGCTCTGTGCTTCCTCTTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTCCCAGAAAGTCATTCGTTGATGGGTTTCCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGGCGTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGTACGTCGGTATATCTTTTAAAATGTTTGTTCGTTTGCGCTAAATCTGGTAGTGGAAATGGTCTTATGGGTTCCAAGCAATCGTGTTCTTTTGGGAGGGGAGTTCAGTTTTTGATTTCTTTGGGGGAGGGGAGCTTTGCTCAGTTCATTCAATTGCATTATTCTGGCTTCCCCACGTTTTATTGTCCCTTTCCATCAAATTAGAGAAGTTATCTTTTAGTTGAATGTCATCAATATCATACCATTGTGGAGAGTCCTGGTTCCTAACATGGTATTAGAGCCATGCCCTTAATTTAGCCATGTCAATACAATCTTCAAATGTCGAACAATGCAGTTGTGAGCCTCGAAGGTGTAGTTAATAGTGACTCAAGTGCTGAACAAAAGGTGTACTTTGAGAGCTTCATAGGCCTCAGGGGAGGCCCTATGGTGTATTTTGTTTTAGGGGAAGATTGTTGAGGATTGTTGGGAAAAAAGTCCCTCATTGGCTAATTAAGGGGTTGATTATGAGTTTATAAGTAAGGAATACATCTCTATTGGTATGAGCCATTTTGGGAAAACCGAAAACAAAACCATAAGAGCTTATGCTTAAAATGGACAATATCATACTATCATGGAGAGTCGTGGTTCCTAACAATTGCCCTAACATTCAAACCTCTTTTTGCTTGTTACGCCAATATGATGTTCATTCCCTGAATTTTGAAGAATTATTTCCTACTTCTGCGAGCTGTTTGTTTATTTCCCCCCAGATTGGATATTCAGCAATCGCTGTTCTTTTCCATTCAGGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTTGTTGATGCCACTGATAAGATATTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTTCATAGTGTTCTATTGTGGCTTTCATAAAAAAAAAGAATGATCTATTGTGCCTGCAATTACCCACCTCGAGCTGTGCATATGCTTTTGTGATATGAAATAAATAAGGTGTCTTAATCATGCTATGGATGACAAGATCTATGTTGTTTAGATTAAGGAGGTTTTGTTGTATTTTTTAAGTTTTAGATAATCGTCTTTAAGATTAGATTATAAGTAACGTTTAGATAGTGACCATTATGATATTGATGGCCTTGAAAAAGTTACAACCGTTCAATTAACCATATGTTACTGTAAGGTTTATTTTGGAGGCTATAAATAGTCATTCATGTTGTTGAGGCTATAAATAGTCATTCATGTTGTTGCTTTAGCAGGAAGATTTTGGATATTAAAATGAAGTTTGCATGGTATACTTCTTAAGCCATGAGCTTGTTCCTTTGCATTTCTCGTGTTTAGACTTGCATGCTAGAGTCGTTCAAGTAGCTTTGATCAAACTATCTTGTGGAATGATTCGAATCATGAGTTTAAAAACGAGTTTTTTTTACTCTTGATCTTGATCATCAAGGTAATCCGTTCCAAAACTTTTCCTTGGGTTGATTCTTATCGTTTTTGGGATTCTTGGATAATTTAGATCTAGAGATCTCGTTCTTTAGCAAGGTTTTTAGATCAAATCCTAAGAGTTTCATATGTTTTGTCTGCTCAGTTTGAACTTTCTTGCTATCTGTTTTCAGTCCTCTCCAATCGAGGTGAGATCTCACACTTTCTTGGTCCTTTCTAGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGCGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGGTAAGCGATTCCGACTACTTAGTGTTATATCGACTCTGCAAACGGAATGTTTATGGGTGGTAGAGGGATTGCTAAAGTTTTGGGCAACACTCCATTTAGGAAAATTATGTCAAAAGAGATGCAGCAAGTATAGTTTCTACTTTATTTGGTAGATCTGTTTTGTTAGAAGCTTTAGTTGGTCAGTTAAGATAGCCTTTTGTGTCTTGGTTGCTGTAGACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCGAACTCGTCACCAATGGGTTTATAGCTTCCGATTCCCATATAAGTTGTGCCAATGGTTCTCACGTTCTATAACATAGCATTCTAGAAACAATGTGTGAGATCCCACGTTAGTTGGAGAGGGGAACGAAGCATTCCTCATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTTTAAAACCGTGAGGCTGATGGCGATATTTAATGAGTTGCCAAGGCAGACAATATCTACTAGCGGGGGTTTGGACTGTTACACAGAAAGTTCCCGTAAACTGCTAAAAGAATTTCCAATTTGCTTCTATTGACGTTCGTGATATTTTATTGGCTGTTTCAAACCATGACAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAGGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAGTACAAACGACGAAAACGATGAAGAAACAAAGCTCTCGTCTAAGGTTTCCAATGTTCATAAAGTCGGAGTTAGCATTTTCATGCTTCAGCTTAATTTGATGTCAGTATTTGATCTGTAATTTGATTCCAAATTCTTCCAAGTTATTAACTCGTGATATGAGCAAATTTTTGAATCTTGTCCTGTTTGAAGGTTTGTTGTAATGGTGATTTTCATTAAATTTGTTGATTGATTTCCCTACCAGGAGGAATTTTTCTTGGTGTCAAAGTGGCCAAAAGTTTTGAACGATGG

mRNA sequence

CCCCGGGTTTCTCATTTTCGTATTCACAAAAGGTAGTCTTATCCGCTATCCATAGCAGAAATTCGCTACAATGGCGATGCTCTGTGCTTCCTCTTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTCCCAGAAAGTCATTCGTTGATGGGTTTCCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGGCGTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTTGTTGATGCCACTGATAAGATATTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGCGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAGGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAGTACAAACGACGAAAACGATGAAGAAACAAAGCTCTCGTCTAAGGTTTCCAATGTTCATAAAGTCGGAGTTAGCATTTTCATGCTTCAGCTTAATTTGATGTCAGTATTTGATCTGTAATTTGATTCCAAATTCTTCCAAGTTATTAACTCGTGATATGAGCAAATTTTTGAATCTTGTCCTGTTTGAAGGTTTGTTGTAATGGTGATTTTCATTAAATTTGTTGATTGATTTCCCTACCAGGAGGAATTTTTCTTGGTGTCAAAGTGGCCAAAAGTTTTGAACGATGG

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCTTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTCCCAGAAAGTCATTCGTTGATGGGTTTCCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGGCGTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTTGTTGATGCCACTGATAAGATATTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGCGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAGGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

Protein sequence

MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQSKSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Homology
[Close]
BLAST of CmoCh09G006570 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.3e-90
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MA+LC+SS+         L++ S  + G  RKS   GF L    + +      + + + S
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSGVQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVV 120
           K  G+QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA DHVNT+KPW+VV
Sbjct: 61  K-RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]
BLAST of CmoCh09G006570 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-80
Identity = 139/177 (78.53%), Postives = 158/177 (89.27%), Query Frame = 0 

Query: 72  LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIAN 131
           +  VPL+QRWMF  +E  GPDIWN TWYPK+ DHV T+K WYVVDATD ILGR+ASTIA 
Sbjct: 74  IPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAI 133

Query: 132 HIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQ 191
           HIRGK+L +YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSGRPGG+  ETFDQLQ+
Sbjct: 134 HIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQK 193

Query: 192 RIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 249
           RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P++LP+RDKRI  E+
Sbjct: 194 RIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250

[Close]
BLAST of CmoCh09G006570 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-50
Identity = 98/146 (67.12%), Postives = 114/146 (78.08%), Query Frame = 0 

Query: 95  NKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]
BLAST of CmoCh09G006570 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.5e-50
Identity = 99/145 (68.28%), Postives = 114/145 (78.62%), Query Frame = 0 

Query: 95  NKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]
BLAST of CmoCh09G006570 vs. ExPASy Swiss-Prot
Match: B1WQT8 (50S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplM PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-49
Identity = 91/131 (69.47%), Postives = 110/131 (83.97%), Query Frame = 0 

Query: 109 EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQ 168
           ++ WYV+DATD+ LGRLA  +A  +RGK+ PTYTP +D G FVI++NA+KVAV+GRK TQ
Sbjct: 13  DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72

Query: 169 KLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 228
           KLYRRHSGRPGGM +ETF++LQQRIPERIIE AV+GMLPK  LGR LF  LKVY GP+HP
Sbjct: 73  KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLKVYPGPNHP 132

Query: 229 HEAQKPVELPI 240
           H+AQKP EL +
Sbjct: 133 HQAQKPEELTL 143

[Close]
BLAST of CmoCh09G006570 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 3.6e-140
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. ExPASy TrEMBL
Match: A0A6J1IPT4 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477096 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.3e-137
Identity = 245/248 (98.79%), Postives = 245/248 (98.79%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS VQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.3e-126
Identity = 227/248 (91.53%), Postives = 232/248 (93.55%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HSTLNN + SNR IPR S V GFPLPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.9e-126
Identity = 227/248 (91.53%), Postives = 232/248 (93.55%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HST NN + SNR IPRKS V GFPLPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.2e-124
Identity = 220/248 (88.71%), Postives = 230/248 (92.74%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTF +HSTL NG+ SN+  PR S +  FPLP SKS  L TQT+I+L S S
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           K S +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. NCBI nr
Match: XP_022935984.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 507.3 bits (1305), Expect = 7.5e-140
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. NCBI nr
Match: KAG6591772.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 506.9 bits (1304), Expect = 9.8e-140
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSG+QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. NCBI nr
Match: XP_023536479.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 502.3 bits (1292), Expect = 2.4e-138
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0 

Query: 1   MAMLCA-SSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ 60
           MAMLCA SSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ
Sbjct: 1   MAMLCASSSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ 60

Query: 61  SKSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD 120
           SKSSG+QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD
Sbjct: 61  SKSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD 120

Query: 121 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180
           KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG
Sbjct: 121 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180

Query: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 240
           GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI
Sbjct: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 240

Query: 241 RDKRINKER 249
           RDKRINKER
Sbjct: 241 RDKRINKER 249

[Close]
BLAST of CmoCh09G006570 vs. NCBI nr
Match: XP_022976844.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 498.8 bits (1283), Expect = 2.7e-137
Identity = 245/248 (98.79%), Postives = 245/248 (98.79%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS VQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 461.5 bits (1186), Expect = 4.7e-126
Identity = 227/248 (91.53%), Postives = 232/248 (93.55%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HSTLNN + SNR IPR S V GFPLPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmoCh09G006570 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 332.8 bits (852), Expect = 2.4e-91
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MA+LC+SS+         L++ S  + G  RKS   GF L    + +      + + + S
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSGVQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVV 120
           K  G+QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA DHVNT+KPW+VV
Sbjct: 61  K-RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]
BLAST of CmoCh09G006570 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]
BLAST of CmoCh09G006570 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:
BLAST of CmoCh09G006570 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SYL93.3e-9067.5950S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
P126294.1e-8078.5350S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P... [more]
B8HMT13.4e-5067.1250S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
Q3MF947.5e-5068.2850S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
B1WQT82.2e-4969.4750S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) ... [more]
BLAST of CmoCh09G006570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F6Z33.6e-140100.0050S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IPT41.3e-13798.7950S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FT162.3e-12691.5350S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IW423.9e-12691.5350S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A0A0KZG16.2e-12488.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1[more]
BLAST of CmoCh09G006570 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935984.17.5e-140100.0050S ribosomal protein L13, chloroplastic-like [Cucurbita moschata][more]
KAG6591772.19.8e-14099.6050S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_023536479.12.4e-13899.2050S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022976844.12.7e-13798.7950S ribosomal protein L13, chloroplastic-like [Cucurbita maxima][more]
XP_022941245.14.7e-12691.5350S ribosomal protein L13, chloroplastic-like [Cucurbita moschata][more]
BLAST of CmoCh09G006570 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78630.12.4e-9167.59Ribosomal protein L13 family protein [more]
AT3G01790.11.2e-1838.40Ribosomal protein L13 family protein [more]
AT3G01790.21.2e-1838.40Ribosomal protein L13 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 111..228
e-value: 4.2E-44
score: 149.5
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 67..245
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 112..238
score: 27.352219
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 112..225
e-value: 4.18767E-64
score: 193.49
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMTIGR01066TIGR01066coord: 107..237
e-value: 3.3E-56
score: 187.0
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 101..244
e-value: 8.7E-61
score: 205.9
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 107..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..248
NoneNo IPR availablePANTHERPTHR11545:SF27BNAA02G18970D PROTEINcoord: 67..245
IPR023563Ribosomal protein L13, conserved sitePROSITEPS00783RIBOSOMAL_L13coord: 202..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G006570.1CmoCh09G006570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017148 negative regulation of translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome