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CmoCh09G006530 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCAATGGCGTAAAACCCTGAACCCTTGACTTTCATAGCTTTGTTCTAGTTGTCTATGTCTCGTTTCAGAGTTCTTCACCGTCGAATTGATTCCCAACTTGGAAGCTATTTCTTCAGTTCACAGTCTACAAATTCCCTGCAATTTCACTCTCTTCCTTCTACTTCTCGAAGATCTCGAACTTTCTCGCCGAAAATCGATGGCGGGATCGGACCAGAAATTGTAGATGTGAAGAGGAATATACGTTTGGATTCTGTGGTTAACCAAGGCGCGAGATCGGGCGGAAGTAGAAATGAGGACAATGTGCTGAAAGGGAGAGTGGATTCGAAGGGGCGAGAGAAATTGACAAGGGAGGACGCTTTGGTCCGTAAAGAGCTTTCTCCGGACATGGAGATGTTTGTGAGACATTTATACAGGGAAGGATATTTTAATTATGCGAATTTTTTGCCTGATAACAAACTGGTTCTCAGTTACTTTGAATGTCGTCATGGACGGGATTTTATCAAGTCTGCGGCTGAGCGGTTTGGCAGAGACAATCAAGAAATTGCGAAGTAAGAAGAGTTTATGTTGTTAGTCTGGTGAATTTTCATCGTCAATGCGTTGATATTGATATCTCTGTTTCGGTTTTTGTGCAATTTTGTTTGAAAATTTGTGAGTAGATCATGTGTCTGATGTAGTGGATAGCTCTTGATCTCTTGCCACCAACGATTTCATCTATGAAGTATGAAATGCTAAGCAATTCAGAAATAGGTGGGAGAATAAAGCAAATCTTACGTAATTGGAGACAAAAAATTAGTATTATTTGGAAGTTCATGCTTGTAAGTCATTTAATGTCAATTTAGCAAATGGTGATGTGAAACTGCTGAAGCTAATTCCGATGAATCATGTGTATTTTTTAGCCTGTGCATTGACATGGGGAAACTATCCTTAGTTCTAGTTTTGAAATTTTTCAAAACATGCTCTTATACATCTTGTGGCAATCAAGACGAAGAAGAAATCGAGGTGATTGGTTGGTTTGAGAAGATATTGTGTTCATGTTTGCTTTTAAAATAAGAAACTGTTATTAGTTTCTGTTAGGGGTCAGATTACTCCAACTATATTTAGTATCATAAATGTAAAAATCTTAGTATGAATCATTCTCAGATGCATTATTTTTTTGGGTAAAATTCTTAGATGTTGATAGTTAAGGGTATGAAAGCTATGAAAAATAAGGACGATGGTGAGAGGTTTTCACACCCTTACAAATAAACGCGCGTCTACTAGGGAGAAGTTATCACACCCTTATAAAGAATATTTCGTTCTCCTCCCCAACTGACGTGGGATCTTATAATCAGAATTTTGTTTTCATTATTCAAATATGATAATATTGGCTGTTATTACTATTCCCAACCATTGTTTTTTGCTGGGTTTGTTGGTTTATAGAGGTTGTTTGGTTCAAATGGTTCAATTTTCAAAATTTATTGTACTCTTATGTCTCTCCAGTCGGTTCAATGTTGATGTTCATCTACCAAACTGACAATAGTTCAATTGGTTTTGGCATTAGTAATCCTCCACCAAAAAGTTATTCACCTAAGATATAACCGACCTGAACCGACCTCTAGTGCAAATTGTGCTGCTGCTGATGTCTGTGCTTGTCATTTTGTTTGCCTGCTGCTTGATAATTGCCTGAAGCCTTATGCTACTGATAATTTCAAGATTTTGAAGGAAATAATGTTTTCTATTCCATCTTTCTGGTTCTGGCAGTTGTGTTTCATTATGAAGACATACCCCTATTGTTTCACGTCTTGAACTCTGAGTCTTGGGATTTTCAGATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCTTTATTTGGATGCCCATCCACTGCTAGAAGAGATGTTTTTGCTGCTAAAAGACTGCGAAAATTCTTTAGTATCCAAGAAGACACAGTAAGCAAAAGCTCAGAAATCATTACTTCCCTTCTTCTATTACCATTTAAATCTTTGTTTTCTTCTCTCTTCAAATTATCCGCAGGTTTGTCACAATTGCACCTTGAGACAGTCATGCAAGTATGTGAATCAAGGTGTTTGGAATTGCGGCACCAAGAATTTAAATTTGGCGGTCGTTATGCAGGTTATTACTCAATATGACTTGCAAGCTATACCAAAACAACTTATAATACCTGAAGACATTAAGGCTTCTGTAAGCCGATTGCTGAAAGAGATATTGAAACTGAGCCCGACCGTGTCGAGGGACTAGTTTTCGCCGCAGCATACGTTGATCAACCCCATCCAATACTAGAAAATCTGGGTTTCTCTCTGGTGGCTGTTGAACCTTCAAGGCGTCCAGCTTGTTCATACGGCATGGTGAGTTTGTGAGCAGTAAAGTAAATACTCTGTTTCTTTGATGGACATACACGATTTAGAGTGCGTTAGCTTGCTTCATTTTGTCACATTGATATAGAACCTGAAAATTCAGTCTAATTATTATATACCTAAACAGTTCGGTTCTAAACTCTTGCTGTTTTCTCACCTTCAGTAGGGGAAGGCGCTACAATGTGGCTGCCAATGTACTACAAAAGTACTTCGTAATAGTTAAAGCTCATTGTCAAAGCTCATTGTCAGTGGATATTGTCTGTTTTGACATGTTACGTATTGCTATTAGTCG ATTTCAATGGCGTAAAACCCTGAACCCTTGACTTTCATAGCTTTGTTCTAGTTGTCTATGTCTCGTTTCAGAGTTCTTCACCGTCGAATTGATTCCCAACTTGGAAGCTATTTCTTCAGTTCACAGTCTACAAATTCCCTGCAATTTCACTCTCTTCCTTCTACTTCTCGAAGATCTCGAACTTTCTCGCCGAAAATCGATGGCGGGATCGGACCAGAAATTGTAGATGTGAAGAGGAATATACGTTTGGATTCTGTGGTTAACCAAGGCGCGAGATCGGGCGGAAGTAGAAATGAGGACAATGTGCTGAAAGGGAGAGTGGATTCGAAGGGGCGAGAGAAATTGACAAGGGAGGACGCTTTGGTCCGTAAAGAGCTTTCTCCGGACATGGAGATGTTTGTGAGACATTTATACAGGGAAGGATATTTTAATTATGCGAATTTTTTGCCTGATAACAAACTGGTTCTCAGTTACTTTGAATGTCGTCATGGACGGGATTTTATCAAGTCTGCGGCTGAGCGGTTTGGCAGAGACAATCAAGAAATTGCGAAATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCTTTATTTGGATGCCCATCCACTGCTAGAAGAGATGTTTTTGCTGCTAAAAGACTGCGAAAATTCTTTAGTATCCAAGAAGACACAGTTTGTCACAATTGCACCTTGAGACAGTCATGCAAGTATGTGAATCAAGGTGTTTGGAATTGCGGCACCAAGAATTTAAATTTGGCGGTCGTTATGCAGGTTATTACTCAATATGACTTGCAAGCTATACCAAAACAACTTATAATACCTGAAGACATTAAGGCTTCTGTAAGCCGATTGCTGAAAGAGATATTGAAACTGAGCCCGACCGTGTCGAGGGACTAGTTTTCGCCGCAGCATACGTTGATCAACCCCATCCAATACTAGAAAATCTGGGTTTCTCTCTGGTGGCTGTTGAACCTTCAAGGCGTCCAGCTTGTTCATACGGCATGGTGAGTTTGTGAGCAGTAAAGTAAATACTCTGTTTCTTTGATGGACATACACGATTTAGAGTGCGTTAGCTTGCTTCATTTTGTCACATTGATATAGAACCTGAAAATTCAGTCTAATTATTATATACCTAAACAGTTCGGTTCTAAACTCTTGCTGTTTTCTCACCTTCAGTAGGGGAAGGCGCTACAATGTGGCTGCCAATGTACTACAAAAGTACTTCGTAATAGTTAAAGCTCATTGTCAAAGCTCATTGTCAGTGGATATTGTCTGTTTTGACATGTTACGTATTGCTATTAGTCG ATGTCTCGTTTCAGAGTTCTTCACCGTCGAATTGATTCCCAACTTGGAAGCTATTTCTTCAGTTCACAGTCTACAAATTCCCTGCAATTTCACTCTCTTCCTTCTACTTCTCGAAGATCTCGAACTTTCTCGCCGAAAATCGATGGCGGGATCGGACCAGAAATTGTAGATGTGAAGAGGAATATACGTTTGGATTCTGTGGTTAACCAAGGCGCGAGATCGGGCGGAAGTAGAAATGAGGACAATGTGCTGAAAGGGAGAGTGGATTCGAAGGGGCGAGAGAAATTGACAAGGGAGGACGCTTTGGTCCGTAAAGAGCTTTCTCCGGACATGGAGATGTTTGTGAGACATTTATACAGGGAAGGATATTTTAATTATGCGAATTTTTTGCCTGATAACAAACTGGTTCTCAGTTACTTTGAATGTCGTCATGGACGGGATTTTATCAAGTCTGCGGCTGAGCGGTTTGGCAGAGACAATCAAGAAATTGCGAAATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCTTTATTTGGATGCCCATCCACTGCTAGAAGAGATGTTTTTGCTGCTAAAAGACTGCGAAAATTCTTTAGTATCCAAGAAGACACAGTTTGTCACAATTGCACCTTGAGACAGTCATGCAAGTATGTGAATCAAGGTGTTTGGAATTGCGGCACCAAGAATTTAAATTTGGCGGTCGTTATGCAGGTTATTACTCAATATGACTTGCAAGCTATACCAAAACAACTTATAATACCTGAAGACATTAAGGCTTCTGTAAGCCGATTGCTGAAAGAGATATTGAAACTGAGCCCGACCGTGTCGAGGGACTAG MSRFRVLHRRIDSQLGSYFFSSQSTNSLQFHSLPSTSRRSRTFSPKIDGGIGPEIVDVKRNIRLDSVVNQGARSGGSRNEDNVLKGRVDSKGREKLTREDALVRKELSPDMEMFVRHLYREGYFNYANFLPDNKLVLSYFECRHGRDFIKSAAERFGRDNQEIAKWLSGSDLRKVALFGCPSTARRDVFAAKRLRKFFSIQEDTVCHNCTLRQSCKYVNQGVWNCGTKNLNLAVVMQVITQYDLQAIPKQLIIPEDIKASVSRLLKEILKLSPTVSRD Homology
BLAST of CmoCh09G006530 vs. ExPASy TrEMBL
Match: A0A6J1F747 (uncharacterized protein LOC111442720 OS=Cucurbita moschata OX=3662 GN=LOC111442720 PE=4 SV=1) HSP 1 Score: 552.4 bits (1422), Expect = 1.1e-153 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of CmoCh09G006530 vs. ExPASy TrEMBL
Match: A0A6J1IGS8 (uncharacterized protein LOC111477088 OS=Cucurbita maxima OX=3661 GN=LOC111477088 PE=4 SV=1) HSP 1 Score: 533.9 bits (1374), Expect = 4.1e-148 Identity = 269/278 (96.76%), Postives = 273/278 (98.20%), Query Frame = 0
BLAST of CmoCh09G006530 vs. ExPASy TrEMBL
Match: A0A0A0L4J9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625010 PE=4 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 1.0e-106 Identity = 211/286 (73.78%), Postives = 230/286 (80.42%), Query Frame = 0
BLAST of CmoCh09G006530 vs. ExPASy TrEMBL
Match: A0A5A7VHD0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00760 PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 1.8e-103 Identity = 209/286 (73.08%), Postives = 227/286 (79.37%), Query Frame = 0
BLAST of CmoCh09G006530 vs. ExPASy TrEMBL
Match: A0A6J1CC23 (uncharacterized protein LOC111009818 OS=Momordica charantia OX=3673 GN=LOC111009818 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 9.9e-78 Identity = 169/264 (64.02%), Postives = 185/264 (70.08%), Query Frame = 0
BLAST of CmoCh09G006530 vs. NCBI nr
Match: XP_022935982.1 (uncharacterized protein LOC111442720 [Cucurbita moschata]) HSP 1 Score: 552.4 bits (1422), Expect = 2.3e-153 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of CmoCh09G006530 vs. NCBI nr
Match: KAG6591767.1 (hypothetical protein SDJN03_14113, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 542.0 bits (1395), Expect = 3.1e-150 Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0
BLAST of CmoCh09G006530 vs. NCBI nr
Match: KAG7024649.1 (hypothetical protein SDJN02_13467, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 542.0 bits (1395), Expect = 3.1e-150 Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0
BLAST of CmoCh09G006530 vs. NCBI nr
Match: XP_023536478.1 (uncharacterized protein LOC111797643 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 538.5 bits (1386), Expect = 3.4e-149 Identity = 271/278 (97.48%), Postives = 275/278 (98.92%), Query Frame = 0
BLAST of CmoCh09G006530 vs. NCBI nr
Match: XP_022976827.1 (uncharacterized protein LOC111477088 [Cucurbita maxima]) HSP 1 Score: 533.9 bits (1374), Expect = 8.4e-148 Identity = 269/278 (96.76%), Postives = 273/278 (98.20%), Query Frame = 0
BLAST of CmoCh09G006530 vs. TAIR 10
Match: AT1G53460.1 (BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). ) HSP 1 Score: 189.5 bits (480), Expect = 3.6e-48 Identity = 96/179 (53.63%), Postives = 126/179 (70.39%), Query Frame = 0
BLAST of CmoCh09G006530 vs. TAIR 10
Match: AT1G55040.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 66.2 bits (160), Expect = 4.6e-11 Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 0
BLAST of CmoCh09G006530 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09 Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 0
BLAST of CmoCh09G006530 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09 Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 0
BLAST of CmoCh09G006530 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 57.0 bits (136), Expect = 2.8e-08 Identity = 34/107 (31.78%), Postives = 51/107 (47.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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